NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F104266

Metagenome / Metatranscriptome Family F104266

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F104266
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 64 residues
Representative Sequence MIRLLGILVVLSVVVAGIGYYRGWFHAESHDTNGQRSVTVTVDKDKLDQDKASAQQQVQDLAHK
Number of Associated Samples 72
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 74.00 %
% of genes near scaffold ends (potentially truncated) 28.00 %
% of genes from short scaffolds (< 2000 bps) 83.00 %
Associated GOLD sequencing projects 68
AlphaFold2 3D model prediction Yes
3D model pTM-score0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (53.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa
(23.000 % of family members)
Environment Ontology (ENVO) Unclassified
(35.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(41.000 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 45.65%    β-sheet: 0.00%    Coil/Unstructured: 54.35%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.32
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF10057MpsC 22.00
PF11752DUF3309 17.00
PF00076RRM_1 2.00
PF09720Unstab_antitox 2.00
PF05532CsbD 1.00
PF00702Hydrolase 1.00
PF03454MoeA_C 1.00
PF13360PQQ_2 1.00
PF11154DUF2934 1.00
PF00403HMA 1.00
PF00067p450 1.00
PF11453DUF2950 1.00
PF01261AP_endonuc_2 1.00
PF07589PEP-CTERM 1.00
PF04672Methyltransf_19 1.00
PF02310B12-binding 1.00
PF00691OmpA 1.00
PF00487FA_desaturase 1.00
PF01527HTH_Tnp_1 1.00
PF01797Y1_Tnp 1.00
PF08282Hydrolase_3 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG2217Cation-transporting P-type ATPaseInorganic ion transport and metabolism [P] 2.00
COG0303Molybdopterin Mo-transferase (molybdopterin biosynthesis)Coenzyme transport and metabolism [H] 1.00
COG0560Phosphoserine phosphataseAmino acid transport and metabolism [E] 1.00
COG0561Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatasesCoenzyme transport and metabolism [H] 1.00
COG1398Fatty-acid desaturaseLipid transport and metabolism [I] 1.00
COG1877Trehalose-6-phosphate phosphataseCarbohydrate transport and metabolism [G] 1.00
COG1943REP element-mobilizing transposase RayTMobilome: prophages, transposons [X] 1.00
COG2124Cytochrome P450Defense mechanisms [V] 1.00
COG2608Copper chaperone CopZInorganic ion transport and metabolism [P] 1.00
COG3237Uncharacterized conserved protein YjbJ, UPF0337 familyFunction unknown [S] 1.00
COG3239Fatty acid desaturaseLipid transport and metabolism [I] 1.00
COG3769Mannosyl-3-phosphoglycerate phosphatase YedP/MpgP, HAD superfamilyCarbohydrate transport and metabolism [G] 1.00

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A53.00 %
All OrganismsrootAll Organisms47.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300004082|Ga0062384_100348879All Organisms → cellular organisms → Bacteria936Open in IMG/M
3300004091|Ga0062387_100026045All Organisms → cellular organisms → Bacteria2505Open in IMG/M
3300004091|Ga0062387_101548315Not Available533Open in IMG/M
3300005538|Ga0070731_10233655All Organisms → cellular organisms → Bacteria1220Open in IMG/M
3300005591|Ga0070761_10191810All Organisms → cellular organisms → Bacteria1208Open in IMG/M
3300005591|Ga0070761_10198435Not Available1188Open in IMG/M
3300005921|Ga0070766_10751645All Organisms → cellular organisms → Bacteria662Open in IMG/M
3300009616|Ga0116111_1015696All Organisms → cellular organisms → Bacteria2833Open in IMG/M
3300009629|Ga0116119_1099345All Organisms → cellular organisms → Bacteria731Open in IMG/M
3300009630|Ga0116114_1002757All Organisms → cellular organisms → Bacteria7676Open in IMG/M
3300009640|Ga0116126_1134314Not Available845Open in IMG/M
3300009644|Ga0116121_1113130Not Available853Open in IMG/M
3300009764|Ga0116134_1008325All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium ADurb.Bin1264584Open in IMG/M
3300010379|Ga0136449_100003017All Organisms → cellular organisms → Bacteria50511Open in IMG/M
3300010379|Ga0136449_101997114Not Available857Open in IMG/M
3300011120|Ga0150983_14367083Not Available705Open in IMG/M
3300011120|Ga0150983_14954982Not Available500Open in IMG/M
3300011120|Ga0150983_16644589Not Available749Open in IMG/M
3300014169|Ga0181531_10151888All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Singulisphaera → Singulisphaera acidiphila1400Open in IMG/M
3300014201|Ga0181537_10403574All Organisms → cellular organisms → Bacteria938Open in IMG/M
3300014201|Ga0181537_11208338All Organisms → cellular organisms → Bacteria510Open in IMG/M
3300014495|Ga0182015_10597304All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia700Open in IMG/M
3300014501|Ga0182024_10033366All Organisms → cellular organisms → Bacteria8736Open in IMG/M
3300014501|Ga0182024_10106400All Organisms → cellular organisms → Bacteria → Proteobacteria4064Open in IMG/M
3300014501|Ga0182024_10195998All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium ADurb.Bin1262768Open in IMG/M
3300014501|Ga0182024_11920625All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → unclassified Syntrophobacterales → Syntrophobacterales bacterium658Open in IMG/M
3300014501|Ga0182024_12444031Not Available565Open in IMG/M
3300014838|Ga0182030_10090235All Organisms → cellular organisms → Bacteria4330Open in IMG/M
3300014838|Ga0182030_10765352Not Available891Open in IMG/M
3300016702|Ga0181511_1168422Not Available1240Open in IMG/M
3300016705|Ga0181507_1042043Not Available618Open in IMG/M
3300016705|Ga0181507_1135519Not Available1060Open in IMG/M
3300016750|Ga0181505_10985510Not Available540Open in IMG/M
3300017935|Ga0187848_10396921Not Available568Open in IMG/M
3300017940|Ga0187853_10095899All Organisms → cellular organisms → Bacteria1465Open in IMG/M
3300017941|Ga0187850_10467733Not Available546Open in IMG/M
3300017988|Ga0181520_10265423Not Available1304Open in IMG/M
3300018002|Ga0187868_1154959Not Available829Open in IMG/M
3300018009|Ga0187884_10024081Not Available3150Open in IMG/M
3300018016|Ga0187880_1217998Not Available856Open in IMG/M
3300018022|Ga0187864_10057739All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia2147Open in IMG/M
3300018026|Ga0187857_10331362Not Available692Open in IMG/M
3300018044|Ga0187890_10537480Not Available658Open in IMG/M
3300018057|Ga0187858_10707744Not Available601Open in IMG/M
3300021181|Ga0210388_10271023All Organisms → cellular organisms → Bacteria1490Open in IMG/M
3300021479|Ga0210410_11150382Not Available667Open in IMG/M
3300025442|Ga0208034_1053510Not Available823Open in IMG/M
3300025459|Ga0208689_1089200Not Available558Open in IMG/M
3300025507|Ga0208188_1045501All Organisms → cellular organisms → Bacteria1124Open in IMG/M
3300027853|Ga0209274_10114745All Organisms → cellular organisms → Bacteria1338Open in IMG/M
3300027854|Ga0209517_10664841Not Available541Open in IMG/M
3300027869|Ga0209579_10558269All Organisms → cellular organisms → Bacteria621Open in IMG/M
3300027879|Ga0209169_10343630All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia785Open in IMG/M
3300027908|Ga0209006_10951878All Organisms → cellular organisms → Bacteria686Open in IMG/M
3300028731|Ga0302301_1054544Not Available1082Open in IMG/M
3300028746|Ga0302233_10045559All Organisms → cellular organisms → Bacteria1812Open in IMG/M
3300028780|Ga0302225_10358846All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Singulisphaera687Open in IMG/M
3300028800|Ga0265338_10247308Not Available1317Open in IMG/M
3300028906|Ga0308309_11573963All Organisms → cellular organisms → Bacteria560Open in IMG/M
3300029910|Ga0311369_11159979Not Available599Open in IMG/M
3300029944|Ga0311352_11114473All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Singulisphaera603Open in IMG/M
3300029951|Ga0311371_12219635Not Available572Open in IMG/M
3300029999|Ga0311339_10653903Not Available1036Open in IMG/M
3300029999|Ga0311339_11175036Not Available705Open in IMG/M
3300029999|Ga0311339_11934135Not Available507Open in IMG/M
3300030054|Ga0302182_10414257All Organisms → cellular organisms → Bacteria563Open in IMG/M
3300030399|Ga0311353_10686383All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Singulisphaera → Singulisphaera acidiphila886Open in IMG/M
3300030399|Ga0311353_11268237Not Available605Open in IMG/M
3300030503|Ga0311370_10891872All Organisms → cellular organisms → Bacteria1009Open in IMG/M
3300030840|Ga0074020_10776073Not Available655Open in IMG/M
3300031053|Ga0074018_1454173All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales1151Open in IMG/M
3300031234|Ga0302325_10039559All Organisms → cellular organisms → Bacteria9562Open in IMG/M
3300031234|Ga0302325_10796418All Organisms → cellular organisms → Bacteria1336Open in IMG/M
3300031234|Ga0302325_10925882All Organisms → cellular organisms → Bacteria1205Open in IMG/M
3300031236|Ga0302324_100450862Not Available1898Open in IMG/M
3300031236|Ga0302324_100633123All Organisms → cellular organisms → Bacteria1526Open in IMG/M
3300031236|Ga0302324_100919230All Organisms → cellular organisms → Bacteria1200Open in IMG/M
3300031236|Ga0302324_102989675Not Available563Open in IMG/M
3300031525|Ga0302326_10462733All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Martelella → Martelella mediterranea1939Open in IMG/M
3300031525|Ga0302326_11204975All Organisms → cellular organisms → Bacteria1041Open in IMG/M
3300031525|Ga0302326_13594313Not Available513Open in IMG/M
3300031708|Ga0310686_104031734Not Available1579Open in IMG/M
3300031708|Ga0310686_110923717All Organisms → cellular organisms → Bacteria3635Open in IMG/M
3300031708|Ga0310686_111432381Not Available501Open in IMG/M
3300031708|Ga0310686_114283015All Organisms → cellular organisms → Bacteria8202Open in IMG/M
3300031759|Ga0316219_1029737Not Available2437Open in IMG/M
3300031813|Ga0316217_10004367All Organisms → cellular organisms → Bacteria15365Open in IMG/M
3300031813|Ga0316217_10074576Not Available1655Open in IMG/M
3300031823|Ga0307478_10483212Not Available1031Open in IMG/M
3300032160|Ga0311301_12478887Not Available581Open in IMG/M
3300032515|Ga0348332_11871855Not Available1176Open in IMG/M
3300032676|Ga0316229_1147586Not Available959Open in IMG/M
3300032677|Ga0316227_1133278Not Available927Open in IMG/M
3300032739|Ga0315741_11289296Not Available654Open in IMG/M
3300033402|Ga0326728_10049455All Organisms → cellular organisms → Bacteria6191Open in IMG/M
3300033402|Ga0326728_10434768Not Available1100Open in IMG/M
3300033405|Ga0326727_10458272All Organisms → cellular organisms → Bacteria1133Open in IMG/M
3300033405|Ga0326727_10746866Not Available769Open in IMG/M
3300034091|Ga0326724_0146788Not Available1469Open in IMG/M
3300034124|Ga0370483_0301501Not Available553Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa23.00%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland14.00%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland9.00%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil6.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater5.00%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost5.00%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil5.00%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog4.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil4.00%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil4.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil4.00%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil4.00%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil3.00%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil2.00%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog2.00%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.00%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.00%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil1.00%
PalsaEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa1.00%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter1.00%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300004082Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3EnvironmentalOpen in IMG/M
3300004091Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300009616Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100EnvironmentalOpen in IMG/M
3300009629Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100EnvironmentalOpen in IMG/M
3300009630Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40EnvironmentalOpen in IMG/M
3300009640Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40EnvironmentalOpen in IMG/M
3300009644Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10EnvironmentalOpen in IMG/M
3300009764Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300014169Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaGEnvironmentalOpen in IMG/M
3300014201Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaGEnvironmentalOpen in IMG/M
3300014495Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014838Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300016702Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300016705Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300016750Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017935Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40EnvironmentalOpen in IMG/M
3300017940Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100EnvironmentalOpen in IMG/M
3300017941Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150EnvironmentalOpen in IMG/M
3300017988Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaGEnvironmentalOpen in IMG/M
3300018002Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40EnvironmentalOpen in IMG/M
3300018009Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40EnvironmentalOpen in IMG/M
3300018016Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40EnvironmentalOpen in IMG/M
3300018022Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40EnvironmentalOpen in IMG/M
3300018026Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100EnvironmentalOpen in IMG/M
3300018044Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10EnvironmentalOpen in IMG/M
3300018057Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150EnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300025442Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100 (SPAdes)EnvironmentalOpen in IMG/M
3300025459Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150 (SPAdes)EnvironmentalOpen in IMG/M
3300025507Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40 (SPAdes)EnvironmentalOpen in IMG/M
3300027853Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)EnvironmentalOpen in IMG/M
3300027854Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)EnvironmentalOpen in IMG/M
3300027869Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027879Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300028731Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_2EnvironmentalOpen in IMG/M
3300028746Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_1EnvironmentalOpen in IMG/M
3300028780Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2EnvironmentalOpen in IMG/M
3300028800Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaGHost-AssociatedOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300029910III_Palsa_E2 coassemblyEnvironmentalOpen in IMG/M
3300029944II_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300029951III_Palsa_N1 coassemblyEnvironmentalOpen in IMG/M
3300029999I_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030054Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1EnvironmentalOpen in IMG/M
3300030399II_Palsa_E2 coassemblyEnvironmentalOpen in IMG/M
3300030503III_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030840Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - LB 8 (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031053Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - LB 6 (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031234Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2EnvironmentalOpen in IMG/M
3300031236Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1EnvironmentalOpen in IMG/M
3300031525Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031759Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003PEnvironmentalOpen in IMG/M
3300031813Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - 1anoAEnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032515FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)EnvironmentalOpen in IMG/M
3300032676Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18023EnvironmentalOpen in IMG/M
3300032677Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18019EnvironmentalOpen in IMG/M
3300032739Forest Soil Metatranscriptomics Site 2 LB Combined AssemblyEnvironmentalOpen in IMG/M
3300033402Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MNEnvironmentalOpen in IMG/M
3300033405Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MYEnvironmentalOpen in IMG/M
3300034091Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00NEnvironmentalOpen in IMG/M
3300034124Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0062384_10034887913300004082Bog Forest SoilMLRLLGVLVVLSVMVAGIGYFRGWFHAESHDINGQHTVELTVDKDKFNQDKAGVQQRVEDLGHK*
Ga0062387_10002604513300004091Bog Forest SoilMLRLLGVLVVLSVMVAGIGYFRGWFHAESHDINGQHTVELTVDKDKFNQDKAGVQQRVEDLGHK
Ga0062387_10154831523300004091Bog Forest SoilAGIGYFRGWFHAESVDANGQRSVTVTVDKEKFDQDKSSAQQKVQDLEHK*
Ga0070731_1023365533300005538Surface SoilMVRFVGMLVLLLALFAGFGYYRGWFHASSSDTSGKDTIKMTVDKDKLSQDKNSAEQKVQDIGQK*
Ga0070761_1019181023300005591SoilMLRFLGFLLVLSAVVAAIGYYRGWFHAESHDVMGHDSVTLSVDKDKATQDKNSAEQQLQDVTHKN*
Ga0070761_1019843513300005591SoilMIRFLGILVVLAALVAGIGYYRGWFHAASADTNGQGTVTLTVDKDKLNQDKASAQQEVQDLGHK*
Ga0070766_1075164513300005921SoilMIRLLGMLVVLLAVIAGIGYYRGWFHAGSADINGQSTVTVTVDKDKLNQDKASAQQEVQD
Ga0116111_101569673300009616PeatlandMTRLLGILVVVLLVVAGIGYYRGWFHAESHDANGHATVTVTVDKDKLNQDKASAQQQVQDLGRK*
Ga0116119_109934523300009629PeatlandMDGNQSVQENQMIRLLGILVVLSAVVAGIGYYRGWFHAESHDTNGQRSVTLTVDKDKLDQDKSSAQQQVQDLAHK*
Ga0116114_100275763300009630PeatlandMIRLLGILVVALFVVAGIGYYRGWFHAESHDANGQRTVTVTVDKDKLDQDKASAQQQVQDLGHK*
Ga0116126_113431413300009640PeatlandMIRLLGILVVVLFVVAGIGYYRGWFHAESHDTNGQRSVTLTVDKDKLDQDKASAQQQVQDLSHK*
Ga0116121_111313033300009644PeatlandETRMIRLLGILVVALFVVAGIGYYRGWFHAESHDTNGQRSVTLTVDKDKLDQDKSSAQQQVQDLAHK*
Ga0116134_100832513300009764PeatlandMIRFLGMLVVLSALVAGIGYYRGWFHAESHDANGKGSVTLTVDKDKLNQDKASAQQQVQDLGHK*
Ga0136449_100003017383300010379Peatlands SoilVFNHVGFFFGSVMDGNQSLREIQMIRLLGILVVLSAVVAGIGYYRGWFHAESRDTNGQRSVTLTVDKDKLDQDKSSAQQQVQDLAHK*
Ga0136449_10199711423300010379Peatlands SoilMIRFLGMLVVLSVLVAGIGYYRGWFLAESHDANGKGSVTVTVDKDKLNQDKASAEQRVQDLGHK*
Ga0150983_1436708313300011120Forest SoilMIRFIGVLVVLLALVAGIGYYRGWFRTESASVGGHDAVTVTVDKDKMNQDKASAEQQVRDLAHK*
Ga0150983_1495498223300011120Forest SoilMIRFIGVLVVLLALVAGIGYYRGWFRTESTNVGGHNALTVTVDKDKISQDKASAEQQVRDLAHK*
Ga0150983_1664458913300011120Forest SoilVLLVVVAGIGYHRGWFHAESHDTNGQHTITLTADKGKFNQDTASARQEMQDLGHK*
Ga0181531_1015188823300014169BogMMRLLGILVVLFAVIASIGYYRGWFHAGSTDANGQQTVTVTVDKDKLDQDKASAKQEVQDLGHK*
Ga0181537_1040357423300014201BogMMRLLGILVVLFAVIASIGYYRGWFHAGSTDANGQQTVTVTVDNDKLDQDKASAQQEVQDLGHK*
Ga0181537_1120833813300014201BogMIRFLGVLVVLFVLVAGFGYYRGWFLVKSHDASGQGSVTLTVDKDKVSQDKASAQQEVQD
Ga0182015_1059730423300014495PalsaMIRLLGILVVLFAVIAGIGYYRGWFHAGSTDTNGQQTVTVTVDKDKLNQDKASAQQEVQDLGHK*
Ga0182024_1003336663300014501PermafrostMWFRLDDEQLIEETPMLRFLGMLVVLLALVAGFGYYRGWFRAGSTDTKGQDSVKLTVDKDKIAQDKASAQQQVQDLGHK*
Ga0182024_1010640023300014501PermafrostMTRFLGMLVVLFVLVACIGYYRGWFRAESHETNGRGTVTLTVDKDKLNQDKASAQQQLQDVEHK*
Ga0182024_1019599843300014501PermafrostVFEHVGFFSPLSKTGFEMIRFLGMLVVLSILVASVGIYRGWFHAGSSDINGQDTLKLTVDKDKLNQDKANAQQEVRDLGHK*
Ga0182024_1192062513300014501PermafrostACHPVLASRENQMLRFLGVLVVLGLLIAGVGYYRGWFVAGSTDTNGKDTLKLTVDKDKLTQDKDSAQQQVQDLGHK*
Ga0182024_1244403123300014501PermafrostMLVVLCVLVAGIGYFRGWFHAGSTDINGQSSVTVTVDQNKLDQDKASAQQQVQDLTHK*
Ga0182030_1009023553300014838BogMAIREIISTTSEEIQMIRFMGTLVVLFILFAAIGYYRGWFFAESRDANGHSSVTLSVDKAKLDQDKAAVQQQVQDLGHK*
Ga0182030_1076535223300014838BogMTRFVGTLVVLLALLAGIGYYRGWFHAESHDSNGHGTVTMTVDKDKLNQDTTSVRQEVRDLGHK*
Ga0181511_116842223300016702PeatlandMIRICGMLVLLLVVAAGIGYYRGWFHAESRDINGKRTLDMTVDKDKFDKDKDTARQKVEDLAHK
Ga0181507_104204313300016705PeatlandMIRLLGILVVALFVLAGIGYYRGWFHAESHDANGQRTVTVTVDKDKLDQDKASAQQQVQDLGHK
Ga0181507_113551923300016705PeatlandMIRFLGMLVVLLALVAGIGYYRGWFHMESTDADGQRTVTVTVDKTQFNQDKVSAQQQVQDLGHK
Ga0181505_1098551023300016750PeatlandMIRFLGMLVVLSALVAGIGYYRGWFHAESHDANGKGSVTLTVDKDKLNQDKASAQQQVQDLGHK
Ga0187848_1039692123300017935PeatlandVLSAVVAGIGYYRGWFHAESHDTNGQRSVTLTVDKDKLDQDKSSAQQQVQDLAHK
Ga0187853_1009589923300017940PeatlandMIRLLGILVVLSAVVAGIGYYRGWFHAESHDTNGQRSVTLTVDKDKLDQDKSSAQQQVQDLAHK
Ga0187850_1046773323300017941PeatlandMIRLLGILVVALFVVAGIGYYRGWFHAESHDANGQRTVTVTVDKDKLDQDKASAQQQVQDLGHK
Ga0181520_1026542333300017988BogMTRFVGTLVVLLALLAGIGYYRGWFHAESHDSNGHGTVTMTVDKDKLNQDTTSVRQEVRDLGHK
Ga0187868_115495913300018002PeatlandQMIRFLGMLVVLSALVAGIGYYRGWFHAESHDANGKGSVTLTVDKDKLDQDKASAQQQVQDLSHK
Ga0187884_1002408133300018009PeatlandMIRLLGMLVVLSVMVAGIGYYRGWFHAESHDANGKGSVTLTVDKDKLNQDKASAEQQVQDLRHK
Ga0187880_121799823300018016PeatlandMIRLLGILVVVLFVVAGIGYYRGWFHAESHDTNGQRSVTLTVDKDKLDQDKASAQQQVQDLSHK
Ga0187864_1005773913300018022PeatlandTTSVFVFGSAMDGNQSVQENQMIRLLGILVVLSAVVAGIGYYRGWFHAESHDTNGQRSVTLTVDKDKLDQDKSSAQQQVQDLAHK
Ga0187857_1033136233300018026PeatlandGILVVVLFVVAGIGYYRGWFHAESHDTNGQRSVTLTVDKDKLDQDKASAQQQVQDLSHK
Ga0187890_1053748013300018044PeatlandPCGCLTTSVFAFGSVMDGNQSLQEIQMIRLLGILVVLSAVVAGIGYYRGWFHAVSHDTNGQRSVTLTVDKDKLDQDKASAQQQVQDLAHK
Ga0187858_1070774423300018057PeatlandMIRLLGILVVVLFVVAGIGHYRGWFHAESHDTNGQRSVTLTVDKDKLDQDKASAQQQVQDLSHK
Ga0210388_1027102323300021181SoilMIRLLGMLVVVLAVLAGIGYYRGWFHAESQNANGHDTVTLTVDKDKLAQDKAAVEQRVENPGHK
Ga0210410_1115038223300021479SoilMIRFIGVLVVLLAVIGGIGYYRGWFRTESTNVGGHNALTVTVDKDKINQDKASAEQQVRDLAHK
Ga0208034_105351023300025442PeatlandMTRLLGILVVVLLVVAGIGYYRGWFHAESHDANGHATVTVTVDKDKLNQDKASAQQQVQDLGRK
Ga0208689_108920023300025459PeatlandSVFVFGSVMDGNQSVQENQMIRLLGILVVLSAVVAGIGYYRGWFHAESHDTNGQRSVTLTVDKDKLDQDKSSAQQQVQDLAHK
Ga0208188_104550113300025507PeatlandMIRLLGILVVVLFVVAGIGYYRGWFHAESHDTNGQRSVTLTVDKDKLDQDKASAQQH
Ga0209274_1011474533300027853SoilMIRFLGILVVLAALVAGIGYYRGWFHAASADTNGQGTVTLTVDKDKLNQDKASAQQEVQDLGHK
Ga0209517_1066484113300027854Peatlands SoilMIRLLGILVVLSAVVAGIGYYRGWFHAESRDTNGQRSVTLTVDKDKLDQDKSSAQQQVQDLAHK
Ga0209579_1055826923300027869Surface SoilMVRFVGMLVLLLALFAGFGYYRGWFHASSSDTSGKDTIKMTVDKDKLSQDKNSAEQKVQDIGQK
Ga0209169_1034363023300027879SoilVVAAIGYYRGWFHAESHDVMGHDSVTLSVDKDKATQDKNSAEQQLQDVTHKN
Ga0209006_1095187823300027908Forest SoilMIRLLGVLVVLAALIAGIGYYRGWFHAESGDTSGQHTVTVTVDKDKISQDKASAQQEVQDLGHK
Ga0302301_105454433300028731PalsaMIRFLGMLVVLCIVIGGIGYYRGWFHTESHDTSGQGTVTVTVDKDKLNQDKTNVQQHLQDLGHK
Ga0302233_1004555933300028746PalsaLCIVIGGIGYYRGWFHTESHDTSGQGTVTVTVDKDKLNQDKTNVQQHLQDLGHK
Ga0302225_1035884613300028780PalsaMTRFLGVLVLLCILVAGIGYCRGWFHAESHDSNGQDTVKLSVDKDKLDQDKASAQAEVQDIGHK
Ga0265338_1024730833300028800RhizosphereMMRLLGMLVFLMIVVAGIGYFRGWFRAESRNTDGQGTVTVTVDKDKLNQDKADVNKEVHDLA
Ga0308309_1157396313300028906SoilLVVLFALLAGVGYWRGWFHAESHDDLGKPTVSVTVDKRKIDQDKASAQQEVQDLGHK
Ga0311369_1115997913300029910PalsaMIRFLGMLVVLFLLFAGIGYYRGWFHAASNDSNGSGSLTVTVDKDKLDQDKASVQQ
Ga0311352_1111447313300029944PalsaMTRFLGVLVLLCILVAGIGYCRGWFHAESHDSNGQDTVKLSVDKDKLDQDK
Ga0311371_1221963513300029951PalsaRFLGILVVLCVLVAGFGFLRGWFHAGSSNTNGQGTVTVTVDQNKLDQDKASAQQEVQDLTHK
Ga0311339_1065390323300029999PalsaMIRFLGILFVLCLLVAGFGFLRGWFHAGSSNTNGQGTVTVTVDQNKVDQDKASAQQEVQDLTHK
Ga0311339_1117503623300029999PalsaMIRLLGMLVVLFVLVAGIGYYRGWFHAEAVETNGQGTVTLTVDKDKLNQDKASAQQQVQDIGHK
Ga0311339_1193413523300029999PalsaMIRLLGMLVVLGLLFAGVGYYRGWFHAGSSDTNGQSTVTVTVDQNKLDQDKASAQQQVQDLTHK
Ga0302182_1041425713300030054PalsaMIRFLGILVVLCVLVAGFGFLRGWFHAGSSNTNGQGTVTVTVDQNKLDQDKASAQQEVQDLTHK
Ga0311353_1068638323300030399PalsaMIRLLGMLVVLLAVIAGIGYYRGWFLAGSTDTNGQQTVTVTVDKDKLNQDKASAQQEVQDLGHK
Ga0311353_1126823723300030399PalsaMLVVLFVLVAGIGYYRGWFHAEAVETNGQGTVTLTVDKDKLNQDKASAQQQVQDIGHK
Ga0311370_1089187243300030503PalsaMIRFLGMLVVLFLLFAGIGYYRGWFHAASNDSNGTGSLTVTVDKDKLDQDKASVQQQVQDLGHK
Ga0074020_1077607313300030840SoilMIRFLGMIVVLCVLVAGVGYYRGWFHAGTSETNGQSTVTVTVDQNKLDQDKASAQ
Ga0074018_145417333300031053SoilMLRFLGMLVVLLALVAGFGYYRGWFHAGSSDSNGQDTIKLTVDQNKLDQDKASAQQQVQDLGHK
Ga0302325_1003955983300031234PalsaMIRFLGMLVVLFLLFAGIGYYRGWFHAASNDSNGSGSLTVTVDKDKLDQDKASVQQQVQDLGHK
Ga0302325_1079641833300031234PalsaMIRILGMLVVLLAVIAGIGYYRGWFHAGSTDTNGQQTVTVTVDKDKLNQDKASAQQEVQDLGHKQLGANSFPSRSRFSKA
Ga0302325_1092588223300031234PalsaMTRFLGMLVVLCVLVGLLGYFRGWFHAESHDDNGQGSVTLTVDKDKLNQDKASAQQQVQDLTHK
Ga0302324_10045086243300031236PalsaMTRLLGMLVMLLIVVAAIGYFRGWFHAESHSVDGQTTVTVTVDKDKVTQDKDSAQQKVQDLGQK
Ga0302324_10063312333300031236PalsaMIRLLGILVVLFAVIAGIGYYRGWFHAGSTDTNGQQTVTVTVDKDKLNQDKASAQQEVQDLGHK
Ga0302324_10091923013300031236PalsaMIRLLGMLVVLFVLVAGIGYYRGWFHAEAVETNGQGTVTLTVDKDKLNQDKASAQQQVQD
Ga0302324_10298967523300031236PalsaKPIKVEKETGMIRFLGVLIVLLLVIAGIGYYRGWFYAKSHDVRGESTVTVTVDKDKIEQDKASARQQVQELEHK
Ga0302326_1046273323300031525PalsaMVSDPPKEIQMIRFLGILVVLCLLVAGFGFLRGWFHAGSSNTNGQGTVTVTVDQNKVDQDKASAQQEVQDLTHK
Ga0302326_1120497513300031525PalsaLVVLLLLVAGIGYYRGWFHAESNDANLQPTVTVTVDKDKLNQDKASARQQV
Ga0302326_1359431313300031525PalsaLGMLVVLGLLFAGVGYYRGWFHAGSSDTNGQGTVTLTVDQNKLDQDKASAQQQVQDLTHK
Ga0310686_10403173453300031708SoilMFRLLVALLVVIAVIGYCRGWFHAQSTDSNGQHTVSLTVDKDKFNQDKADAQQQVQDLGH
Ga0310686_11092371723300031708SoilMSRFLGMIVVLCVLVACVGYYRGWFHAGSSDTNGQSTVTVTVDQNKLDQDKANVQQKVQDLTHK
Ga0310686_11143238113300031708SoilMIRFLGILVVLFAIVAGIGYYRCWFHTESQTADGHSTVSVTVDKDKINQDKTSAEQQVQDLTHK
Ga0310686_11428301593300031708SoilMIRVLGILVVLFAIVAGIGYYRGWFHTDSQTADGHSAVTVTVDKDKINQDKTSAEQQVQDLTHK
Ga0316219_102973713300031759FreshwaterMTRFLGMLVVLLALVAGIGYYRGWFHAQSRDINGQRTLKLTVDEDKLDQDKDKARQEVRDWEHK
Ga0316217_10004367123300031813FreshwaterMIRFLGMLVVVFALIAAVGYYRGWFHAESSDTNGHSSLTVTVDKDKVDQDKASARQDVQNLEHK
Ga0316217_1007457623300031813FreshwaterMIRFLGMLVVLLAVVAAVGYYRGWFHAESSDANGHGSVTVTVDQDKINQDKASARQDVQDLEHK
Ga0307478_1048321223300031823Hardwood Forest SoilMVRFIGVVIVLLAVVAGIGYYRGWFRTESNSTGGHDAVTVTVDKDKINQDKASAEQQVQYLGHK
Ga0311301_1247888713300032160Peatlands SoilMIRFLGMLVVLSVLVAGIGYYRGWFLAESHDANGKGSVTVTVDKDKLNQDKASAEQRVQDLGHK
Ga0348332_1187185523300032515Plant LitterMTRFLGTLVVIGAIVAGIGYYRGWFHAESRQTNGQGTVTLTVDKDKLNQDKASAQQQVQNLEHK
Ga0316229_114758613300032676FreshwaterLGMLVVVFALIAAVGYYRGWFHAESSDTNGHSSLTVTVDKDKVDQDKASARQDVQNLEHK
Ga0316227_113327833300032677FreshwaterLIAAVGYYRGWFHAESSDTNGHSSLTVTVDKDKVDQDKASARQDVQNLEHK
Ga0315741_1128929623300032739Forest SoilMIRFLGMIVVLCVLVAGVGYYRGWFHAGTSETNGQSTVTVTVDQNKLDQDKASA
Ga0326728_1004945543300033402Peat SoilMIRLLGILVVLSVVVAGIGYYRGWFRAESHDSNGQRTVTVTVDKDKLNQDKASAQQQVRDLEHK
Ga0326728_1043476813300033402Peat SoilMIRLLGILVVLSVVVAGIGYYRGWFHAESHDTNGQRSVTVTVDKDKLDQDKASAQQQVQDLAHK
Ga0326727_1045827223300033405Peat SoilMIRLLFVVAGIGYYRGWFHAESHDTNGQRSVTVTVDKDKLDQDKAGAQQQVQDLAHK
Ga0326727_1074686623300033405Peat SoilRDSTTSVLLFGSVMHGNQSLQEIQMIRLLGILVVLSVVVAGIGYYRGWFHAESHDTNGQRSVTVTVDKDKLDQDKASAQQQVQDLAHK
Ga0326724_0146788_957_12173300034091Peat SoilLNTSVFVFGSVIDGNQSIQENQMIRLLGILVVLSVVVAGIGYYRGWFRAESHDSNGQRTVTVTVDKDKLNQDKASAQQQVRDLEHK
Ga0370483_0301501_168_3623300034124Untreated Peat SoilMTRFLGTLVVLALVVACIGYYRGWFRAESTDASGQSTVTVTVDKDKFNQDKASAQQQVQDLTHK

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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