Metagenome Family F104310

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F104310
Family Type	Metagenome
Number of Sequences	100
Average Sequence Length	65 residues
Representative Sequence	MNRPDFNELVAALKGGSSKGVGFQLAKPENFDGIRDRKVVDAWLAEMEDYIHATKVGRHSAVELA
Number of Associated Samples	8
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	88.89 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	6
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (96.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated (100.000 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant corpus (100.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.01% β-sheet: 0.00% Coil/Unstructured: 56.99%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF03732	Retrotrans_gag	22.00
PF00078	RVT_1	14.00
PF13975	gag-asp_proteas	6.00
PF13650	Asp_protease_2	5.00
PF09337	zf-H2C2	5.00
PF00098	zf-CCHC	4.00
PF02992	Transposase_21	2.00
PF08284	RVP_2	2.00
PF01150	GDA1_CD39	1.00
PF05060	MGAT2	1.00
PF13359	DDE_Tnp_4	1.00
PF01663	Phosphodiest	1.00
PF00271	Helicase_C	1.00
PF00385	Chromo	1.00
PF00107	ADH_zinc_N	1.00
PF01237	Oxysterol_BP	1.00
PF07727	RVT_2	1.00
PF04937	DUF659	1.00

COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG5371	Nucleoside diphosphatase, GDA1/CD39 family	Nucleotide transport and metabolism [F]	2.00

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.00 %
All Organisms	root	All Organisms	4.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.00 %
cellular organisms	root	All Organisms → cellular organisms	4.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.00 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	4.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.00 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	3.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.00 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	2.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.00 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	2.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.00 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	2.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.00 %
Bryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Bryophyta	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.00 %
Bryophytina	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Bryophyta → Bryophytina	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.00 %
Bryopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Bryophyta → Bryophytina → Bryopsida	1.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300009500\|Ga0116229_10001035	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	42011	Open in IMG/M
3300009500\|Ga0116229_10004286	All Organisms → cellular organisms → Eukaryota → Viridiplantae	23403	Open in IMG/M
3300009500\|Ga0116229_10114844	Not Available	2402	Open in IMG/M
3300009709\|Ga0116227_10006356	Not Available	23993	Open in IMG/M
3300009787\|Ga0116226_10031564	Not Available	5230	Open in IMG/M
3300027860\|Ga0209611_10011399	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Bryophyta → Bryophytina → Bryopsida	12819	Open in IMG/M
3300027860\|Ga0209611_10024479	All Organisms → cellular organisms → Eukaryota	6580	Open in IMG/M
3300027860\|Ga0209611_10052142	Not Available	3256	Open in IMG/M
3300027860\|Ga0209611_10074620	Not Available	2430	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	100.00%

Habitat	Taxonomy	Distribution
Peat Moss	Host-Associated → Plants → Peat Moss	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	100.00%

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	100.00%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300009500	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009510	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300009697	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009701	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300009709	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009787	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fa - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300027807	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG (SPAdes)	Host-Associated	Open in IMG/M
3300027860	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0116229_1000103522	3300009500	Host-Associated	MNRPNFSELVTALKGGASKDAKFQPAKPENFNGARDRKVVDVWFTKMEDYLHAAKVGRHSTMELT*
Ga0116229_100010984	3300009500	Host-Associated	MNRLDFGELVAALKTGTTKGERFQPAKPGNFNGARDQKVVDVWLAEMEDYIHAAKVGRHSIVELA*
Ga0116229_1000130537	3300009500	Host-Associated	MNKPDFTKLVAAFKGGSPKGVGFQLVKIGNFDGIRDQKVINAWLVEMEDYIHVAKVGQHSAVELV*
Ga0116229_1000279730	3300009500	Host-Associated	MNRPDFTKLVAALKGGSLKGVGLKFAKLGNFDVVRDQKVVDAWLAEMEDYLHVAKVARHSAMELT*
Ga0116229_100036397	3300009500	Host-Associated	MPKQLEVLLKMNWPDFIGLVEALKRGSSKSVGFKPAKLGNFDGVQNQKVVDAWLVDMEDYLHATKIGRQFVVELV*
Ga0116229_100042863	3300009500	Host-Associated	MNRLNFSELVTAFKGGASKDARFQLAKPRNFNGAHDQKVVDAWLVEMEDYLHAAKVGRHSAVELAQF*
Ga0116229_1000474125	3300009500	Host-Associated	MNRLNFSELVATLKGGSSKNAGFQPAKPVNFDGACDRKVLDAWLAEMEDYLHATKVGRHLTVEIA*
Ga0116229_100051669	3300009500	Host-Associated	MNRPDFSELVVALKGGPSKNAGFQLAKLENFDGARDRKVVDSWLAEMEDYLHAAKVGRHSAVELA*
Ga0116229_1000525722	3300009500	Host-Associated	LEILLKMNRPNFSELVASLKGGTSKDARFQPAKPGNFDGARDRKVVDAWFVEMEDYLHAAMV*
Ga0116229_1001015411	3300009500	Host-Associated	LEILLKMNRLDFSELVMALKGGASKDVRFEPAKPENFDGARDRKVVDVWLAEMEDYLHAAKVGRHSAVELA*
Ga0116229_100145506	3300009500	Host-Associated	MNRPDFNELVVALKGGSSKGVEFKPAKPENFDGAWDQKVVDAWLAEMEDYLHAAKVGRHSAVELAQSY*
Ga0116229_100199967	3300009500	Host-Associated	VAHPALKGGASKDGKFQPAKPGNFDGAHDRKVVDVWLAEMEDYLHAAKVGRHSVVELA*
Ga0116229_100200105	3300009500	Host-Associated	MNRPDFNELVAALKGGSSKGVGFQLAKPENFDGIRGRKVVDAWLAEMEDYIHATKVGRHSAVELA*
Ga0116229_100229942	3300009500	Host-Associated	LEVLLKMNRPEFSELVVALKRGSSKNAGFQPAKPGNFDGAHDRNVVDAWLAEMDNYLHVAKVGQHLAVELA*
Ga0116229_100297354	3300009500	Host-Associated	MNKPNFNELVVTFKGRASKDAKFQPVKPGNFDGAHDRKVVDVWVAEMEDYLHATKVGQHSAVELA*
Ga0116229_100683752	3300009500	Host-Associated	MNRPDFGELVAALKTGTSNSERFQPAKPGNFDGAQHQKVVDAWLAEMEDYIHATKVGRHSTMELVQSYLKGYAAT*
Ga0116229_100725935	3300009500	Host-Associated	MNRPDYNELVVALKGESSKGVEFKPARLGNFDGARDRKVVDAWLAEMEDYLHAAKVGRHSAVELAQSYLK
Ga0116229_100744125	3300009500	Host-Associated	MNRPDFNELIAALKGVSSKNAGFQLAKLENFNGARDRKVVDVCLAEMEDYLHATKVGRHSAIELA*
Ga0116229_100810384	3300009500	Host-Associated	MEFGPIHPGILEVLFKMNRPDFSELVAALKGGASKDARFQPAKPGNFDGARDRKVVDAWLAEMEDYLHAAKVG*
Ga0116229_100855802	3300009500	Host-Associated	MEVLLKMNRPDFNELVTAFKGGASKDVKFQLAKPKNFDGARDRKVVDSWLVEMEDYLHAAKVGR*
Ga0116229_101148442	3300009500	Host-Associated	VLFTLEQLEVLLKMNRPDYNELVAALKGGSSKSVGFKPARPENFEGARDRKVVDTWLAEMEDYLHAAKVGWHSAVEFA*
Ga0116229_101643694	3300009500	Host-Associated	ELVAALKGGASKDARFQPTKPGNFDGGQDRKVVDAWLAKMEDYLHATKVG*
Ga0116229_101856471	3300009500	Host-Associated	MNRPDFGELVAALKTGTSKGERFQLAKPENFDGARDRKVVDAWLAEMEDYIHAAKLAGIPPWSLLNPT*
Ga0116229_101885273	3300009500	Host-Associated	LKVLLKMNRPDFSELVAALKGGTSKDARFQPAKPENFDGARDRKVVDAWLAELEDYLHAAKVG*
Ga0116229_103509132	3300009500	Host-Associated	MNRPDFGELVAALKTGTSKGERFQPAKPGNFDCARDRKVVDAWLAEMEDYIHAVELA*
Ga0116229_108128051	3300009500	Host-Associated	MNRPDFSELIVALKGGSSKNAGFQPAKPWNFDGVCDRKVMDAWFAEMEDYLRAAKVGRHSAVELT*
Ga0116229_116475751	3300009500	Host-Associated	MNRPNFSEMVAAFKGGASKDVRFQLAKPGNFDGARDRKVMDAWLAEMEDYLHAAKVGWHLAVELAQFYLKG
Ga0116230_100668092	3300009510	Host-Associated	MNRLDFSELVAAFKGGSSKGVGFQPTKPSNFDGIRDQKVVDVWFVEMEDYIHATKVG*
Ga0116230_103357082	3300009510	Host-Associated	LEVLLKMNRPDFNELVVALKGSSSKNEGFQPAKLENFDGACHQKVVDAWLAEMEDYLHATKVR*
Ga0116230_103731252	3300009510	Host-Associated	MNRPDFSELVAALKGGSFKNVGFQPAKPRNFDGVHDRKVVDDWLAEMEDYIHATKVG*
Ga0116230_105679572	3300009510	Host-Associated	MNRPDFSELVAALKGGSFKSVGFQPAKPRNFDGVHDRKVVDAWPAEMEDYIHATKVG*
Ga0116230_113692641	3300009510	Host-Associated	LKMNRPNFSELVASLKGGTSKDARFQPAKPGNFDGARDRKVVDAWFVEMEDYLHAAMV*
Ga0116231_1000060645	3300009697	Host-Associated	MNGPDFSELVVALKGGASKDVKFQPAKPKNFDGACNRKVVDAWLAEMEDYLHVAKVGRHSAVELA*
Ga0116231_1000224823	3300009697	Host-Associated	VAHPALKGGASKDGKFQPTKPGNFDGAHDRKVVDVWLAEMEDYLHAAKVGRHSVVELA*
Ga0116231_100039719	3300009697	Host-Associated	MNRLNFSELVTALKGGASKDARFQLAKPRNFNGAHDQKVVDAWLVEMEDYLHAAKVGRHSAVELAQF*
Ga0116231_1000504111	3300009697	Host-Associated	MNRLDFSELVMALKGGASKDVRFEPAKPENFDGARDRKVVDVWLAEMEDYLHAAKVGRHSAVELA*
Ga0116231_100111508	3300009697	Host-Associated	MNRPDFNELVAALKGGSSKGVGFKLAKPENFDGIRDRKVVDAWLAEMEDYIHATKVGRHSAVELA*
Ga0116231_100297154	3300009697	Host-Associated	MNRPDFGELVAALKTGTSNSERFQPAKPGNFDGARHQKVVDAWLAEMEDYIHATKVGRHSTMELVQSYLKGYAAT*
Ga0116231_100500614	3300009697	Host-Associated	MEFGPIHPGILEVLFKMNRPDFSELVTALKGGASKDARFQPAKPGNFDGARDRKVVDAWLAEMEDYLHAAKVG*
Ga0116231_100637314	3300009697	Host-Associated	LEVLLKINRPDFNELVAVLKGGSSKGVEFKPVKLGNFDGSRDQKVVDAWLTEMEDYFHAAKVG*
Ga0116231_102489501	3300009697	Host-Associated	MNRPDFGELVAGLKTGTSKGERFQLAKPGNFDDARHRKVVDAWFAEMEDYIH*
Ga0116231_103276642	3300009697	Host-Associated	LEVLLKMNRPDFSELVEALKGGSSKSVGFKPARPRNFEGARDRKVVDAWLAEMEDYLHAAKVGRHSAVELA*
Ga0116231_104166492	3300009697	Host-Associated	NRPDFGELVAALKTGTSKGERFQPAKPGNFDGARDRKVVDVWLAEMEDYIHAAKVGRHSTVELA*
Ga0116228_1000155312	3300009701	Host-Associated	MNGPNFTKLVEALKGGSSINVRFKPIKLGNFDGVLDRKVVDTWLVEMEDYLHATKVR*
Ga0116228_100040148	3300009701	Host-Associated	MNRLDFTELVEALKGRSSMSVGFKFVKPRNFDGVQDQKVVDVWFMKMEDYIHAAKVGQHSAMELAHFI*
Ga0116228_100193377	3300009701	Host-Associated	MNRPDFSELVATLKGGSFKNVGFQPAKPRNFDGVHDQKVVDDWLAEMEDYIHATKVG*
Ga0116228_100495982	3300009701	Host-Associated	MNRLDFSELVAAFKGGSSKGVGFQPTKPSNFDGIRDQKVVDVWFVEMEDYIHATKVGLHSAVELA*
Ga0116228_101082801	3300009701	Host-Associated	MNRPYFNELVTALKGGSSKSAGFQPAKPENFDGAHEQKVVDVWLAEMENYIHAAKVG*
Ga0116228_101910574	3300009701	Host-Associated	SYSPREQLEVLLKINRPNFSELVAALKGGSSKNASFQLTKPENFDGAHDRKVVDAWLAKMEDYIHVSKVGRHSTL*
Ga0116228_110047021	3300009701	Host-Associated	LEVLVKMNRLDFGELVAAFKTGTAKGERFQLAKPGNFDGAHDRKVVDAWLVEIDDYLHAAKVGWHCAVELA*
Ga0116227_1000635627	3300009709	Host-Associated	MNRLNFSELVATLKGGSSKNAGFQPAKPVNFDGACDRKVLDAWLAEMEDYLHATKVGRHSTVEIA*
Ga0116227_100075111	3300009709	Host-Associated	LEILLKMNRPNFSELVASLKGGASKDARFQPAKPGNFDGARDRKVVDAWFVEMEDYLHAAMV*
Ga0116227_1000807418	3300009709	Host-Associated	MNRPDFSELVVALKGGPSKNVGFQLAKLENFDGARDRKVVDSWLAEMEDYLHAGKVGRHSAVELA*
Ga0116227_100085488	3300009709	Host-Associated	MNRPDFNELVAALKGGSSKGVGFQLAKPENFDGIRDRKVVDAWLAEMEDYIHATKVGRHSAVELA*
Ga0116227_112699121	3300009709	Host-Associated	PEQLEVLLKMNRPDYNELVAALKGGSSKGVGFKPARPGNFERARDRKVVDAWLAEMEDYLHAAKVGRHSAVELA*
Ga0116226_1003156410	3300009787	Host-Associated	MNRPDFNELIITLKGGSSKGVEFKPAKLENFDGARDRKVVDACLTEMEDYLHVAKVG*
Ga0116226_100346457	3300009787	Host-Associated	MNRPDFSELVTALKKGSSKNAGFQPAKPGNFDGARDRKVVDAWLVEMEDYLHATKVGQHSAVELT*
Ga0116226_100524233	3300009787	Host-Associated	MNRLDFTELVKALKGRSFMSVRFKFVKPENFDGVQDQKVVDVWFMKMEDYIHAIKVGQHSAMELVHFI*
Ga0116226_100770843	3300009787	Host-Associated	MNRLNFSELVAALKGGASKDARLQPAKPGNFDGARDRKVVDAWLAEMEDYLHAAKVGRHSAVELA*
Ga0116226_101754172	3300009787	Host-Associated	LEVLLKMNRPDFSELVAALKGGSSKNAKYQPAKPGNFDGARDRKVVDVWLAKMEDHIHAAKVG*
Ga0116226_102159831	3300009787	Host-Associated	LEVLFKMNRLDFNELVVALKGRSSKNAGFQLAKPRNFDGAHNRTVVDAWLAEMEDYLHAAKVGWYSAVELA*
Ga0116226_103847612	3300009787	Host-Associated	MNRPYFNELVTALKGGSSKSAGFQPAKLKNFDGAHDQKVVDVWLAEMENYIHAAKVG*
Ga0116226_104423672	3300009787	Host-Associated	VVALKGGSSKSAGFQLAKPGNFNGARDRKVVDAWLTEMEDYLHAAKVGRHSAVELTQSYLKGYAPT*
Ga0116226_104822393	3300009787	Host-Associated	MNRLDFSELVVTLKGGSSKSAGFQPAKLGNFDGAHDRKVVDAWLAEMEDYIHATKVR*
Ga0116226_105858941	3300009787	Host-Associated	MNGPDFSELVVALKGGSSKSVGFQLAKPGNFNGAHDQKVVDAWLTEMEDYLHAAKVGQHSAMELT*
Ga0116226_117838102	3300009787	Host-Associated	MNRLDCSELVAALKEGSFKNAGFQPAKPGNFDGARDRKVVDVWLAEMDDYLHAAKVGRHSAVEL
Ga0116226_118194011	3300009787	Host-Associated	DFGELVAALKTGTSKGENFQPAKPGNFDGIHDRKVVDAWLAEMDDYLHAAKVGRHSAVELAQSYLRAMLPHGGGR*
Ga0116226_118449301	3300009787	Host-Associated	MNRPDFNELLAALKGGSSKGVGFQLAKLGNFDGV*DRKVVDAWVAEMEDYLHAAKVGRH
Ga0116226_118520521	3300009787	Host-Associated	MGRPDFGELVAALKTGAAKGERFQPTKPENFDGARDHKVVDAWLAEMDDYLHAAKVGRNSAMELAQSY
Ga0209208_100028572	3300027807	Host-Associated	MNRPDFSELVAALKGGSFKNVGFQPAKPRNFDGVHDRKVVDDWLAEMEDYIHATKVG
Ga0209208_100074068	3300027807	Host-Associated	MNGPNFTKLVEALKGGSSINVRFKPIKLGNFDGVLDRKVVDTWLVEMEDYLHATKVR
Ga0209208_1002333412	3300027807	Host-Associated	MNRLDFSELVAAFKGGSSKGVGFQPTKPSNFDGIRDQKVVDVWFVEMEDYIHATKVG
Ga0209208_101073302	3300027807	Host-Associated	MNRFDFNELVAALKGRSSKGVEFKPATPGNFDGARDRKVVDAWLAEMEYYLHAAKVGRHSVVEFA
Ga0209611_1000015396	3300027860	Host-Associated	MNRLDFSELVMALKGGASKDVRFEPAKPENFDGARDRKVVDVWLAEMEDYLHAAKVGRHSAVELA
Ga0209611_1000042341	3300027860	Host-Associated	MNRPNFSELVVVLKGGASKDVRFQPAKRENFDDAYDRKVVDAWLAEMEDYIHVAKVG
Ga0209611_1000113718	3300027860	Host-Associated	MPKQLEVLLKMNWPDFIGLVEALKRGSSKSVGFKPAKLGNFDGVQNQKVVDAWLVDMEDYLHATKIGRQFVVELV
Ga0209611_100014707	3300027860	Host-Associated	LEVLLKMNKPDFTKLVAAFKGGSPKGVGFQLVKIGNFDGIRDQKVINAWLVEMEDYIHVAKVGQHSAVELV
Ga0209611_100027921	3300027860	Host-Associated	MNRPNFSELVASLKGGTSKDARFQPAKPGNFDGARDRKVVDAWFVEMEDYLHAAMV
Ga0209611_1000618519	3300027860	Host-Associated	VAHPALKGGASKDGKFQPAKPGNFDGAHDRKVVDVWLAEMEDYLHAAKVGRHSVVELA
Ga0209611_100070523	3300027860	Host-Associated	MEVLLKMNRPDFNELVTAFKGGASKDVKFQLAKPKNFDGARDRKVVDSWLVEMEDYLHAAKVGR
Ga0209611_1000765922	3300027860	Host-Associated	MNRPNFNELVAALKGGTSKDARFQPAKPGNFDDARDQKVVDAXLAEMEDYLHAAKVGQHLVVKLA
Ga0209611_100077526	3300027860	Host-Associated	MNKPNFNELVVTFKGRASKDAKFQPVKPGNFDGAHDRKVVDVWVAEMEDYLHATKVGQHSAVELA
Ga0209611_1000821617	3300027860	Host-Associated	MNRLNFSELVATLKGGSSKNAGFQPAKPVNFDGACDRKVLDAWLAEMEDYLHATKVGRHLTVEIA
Ga0209611_100113995	3300027860	Host-Associated	MNRPDFNELIAALKGVSSKNAGFQLAKLENFNGARDRKVVDVCLAEMEDYLHATKVGRHSAIELA
Ga0209611_100117877	3300027860	Host-Associated	MNRPDFNELVAALKGGSSKGVGFQLAKPENFDGIRGRKVVDAWLAEMEDYIHATKVGRHSAVELA
Ga0209611_1001437711	3300027860	Host-Associated	MNGPDFSELVVALKGGASKDVKFQPAKPKNFDGACNRKVVDAWLAEMEDYLHVAKVGRHSAVELA
Ga0209611_100169342	3300027860	Host-Associated	LEVLLKMNRPEFSELVVALKRGSSKNAGFQPAKPGNFDGAHDRNVVDAWLAEMDNYLHVAKVGQHLAVELA
Ga0209611_1002447912	3300027860	Host-Associated	LEVLLKMNRPDFSELVVALKGGPSKNAGFQLAKLENFDGARDRKVVDSWLAEMEDYLHAAKVGRHSAVELA
Ga0209611_100293976	3300027860	Host-Associated	MNRPDFNELVAALKGGASKDARFQPTKPGNFDGGQDRKVVDAWLAKMEDYLHATKVG
Ga0209611_100378922	3300027860	Host-Associated	MNRPDFGELVAALKTGTSNSERFQPAKPGNFDGAQHQKVVDAWLAEMEDYIHATKVGRHSTMELVQSYLKGYAAT
Ga0209611_100405738	3300027860	Host-Associated	MNRPDFNELVAALKGEASKDVKFQPVKPGNFDGARDRKVVDVWLEEMEDYLHATKVRRHSAM
Ga0209611_100433682	3300027860	Host-Associated	MNRPNFSELVTALKGGASKDAKFQPAKPENFNGARDRKVVDVWFTKMEDYLHAAKVGRHSTMELT
Ga0209611_100521422	3300027860	Host-Associated	MNRPDFSELVAALKGGTSKDARFQPAKPENFDGARDRKVVDAWLAELEDYLHAAKVG
Ga0209611_100570573	3300027860	Host-Associated	MEFGPIHPGILEVLFKMNRPDFSELVAALKGGASKDARFQPAKPGNFDGARDRKVVDAWLAEMEDYLHAAKVG
Ga0209611_100746204	3300027860	Host-Associated	VLFTLEQLEVLLKMNRPDYNELVAALKGGSSKSVGFKPARPENFEGARDRKVVDTWLAEMEDYLHAAKVGWHSAVEFA
Ga0209611_100920041	3300027860	Host-Associated	LEVLFKMNRPDFSELIVALKGGSSKNAGFQPAKPWNFDGVCDRKVMDAWFAEMEDYLRAAKVGRHSAVELT
Ga0209611_101054562	3300027860	Host-Associated	MNRYDFGELVAALKMGTSKGEKFQPAKPGNFDGVHDRKVVDVWLAKMDDYLHAAKVGRHSAMELAQSYLKGYVSQP
Ga0209611_101071441	3300027860	Host-Associated	MNRPDFGELVAALKTGTSKGERFQLAKPENFDGARDRKVVDAWLAEMEDYIHAAKLAGIPPWSLLNPT
Ga0209611_101673602	3300027860	Host-Associated	MNRPDFGELVAALKTGTSKGERFQPAKPGNFDCARDRKVVDAWLAEMEDYIHAVELA
Ga0209611_106220751	3300027860	Host-Associated	MESSSPRNNWRPYNRPDFSELVAALKGGASKSVGFKPARPGNFEGARDWKVVDAWLVEMKDYLHAAKVGRHSTVELA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F104310

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences