NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F104313

Metagenome Family F104313

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F104313
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 58 residues
Representative Sequence MTLSANHIHFFVSYAVAFLVFGLIGKWYLWPAIRERAPGIALTPLLLYACLRVNGLMFLM
Number of Associated Samples 69
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 98.00 %
% of genes near scaffold ends (potentially truncated) 97.00 %
% of genes from short scaffolds (< 2000 bps) 95.00 %
Associated GOLD sequencing projects 62
AlphaFold2 3D model prediction Yes
3D model pTM-score0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (86.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(28.000 % of family members)
Environment Ontology (ENVO) Unclassified
(56.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(57.000 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 51.14%    β-sheet: 0.00%    Coil/Unstructured: 48.86%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.45
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF12697Abhydrolase_6 22.00
PF01638HxlR 10.00
PF00561Abhydrolase_1 10.00
PF02426MIase 8.00
PF04403PqiA 1.00
PF14248DUF4345 1.00
PF07992Pyr_redox_2 1.00
PF04226Transgly_assoc 1.00
PF01266DAO 1.00
PF12867DinB_2 1.00
PF12625Arabinose_bd 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG1733DNA-binding transcriptional regulator, HxlR familyTranscription [K] 10.00
COG4829Muconolactone delta-isomeraseSecondary metabolites biosynthesis, transport and catabolism [Q] 8.00
COG2261Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein familyGeneral function prediction only [R] 1.00
COG2995Intermembrane transporter PqiABC subunit PqiACell wall/membrane/envelope biogenesis [M] 1.00

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms86.00 %
UnclassifiedrootN/A14.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300004267|Ga0066396_10069915All Organisms → cellular organisms → Bacteria601Open in IMG/M
3300004463|Ga0063356_101453938All Organisms → cellular organisms → Bacteria1012Open in IMG/M
3300005332|Ga0066388_100532151All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1807Open in IMG/M
3300005332|Ga0066388_103043074All Organisms → cellular organisms → Bacteria857Open in IMG/M
3300005332|Ga0066388_105279150All Organisms → cellular organisms → Bacteria655Open in IMG/M
3300005437|Ga0070710_11483398All Organisms → cellular organisms → Bacteria → Proteobacteria509Open in IMG/M
3300005454|Ga0066687_10967514All Organisms → cellular organisms → Bacteria508Open in IMG/M
3300005617|Ga0068859_102010201All Organisms → cellular organisms → Bacteria638Open in IMG/M
3300005764|Ga0066903_100121006All Organisms → cellular organisms → Bacteria → Proteobacteria3638Open in IMG/M
3300005764|Ga0066903_109033813All Organisms → cellular organisms → Bacteria504Open in IMG/M
3300009488|Ga0114925_10867014All Organisms → cellular organisms → Bacteria651Open in IMG/M
3300009488|Ga0114925_11231489All Organisms → cellular organisms → Bacteria550Open in IMG/M
3300010358|Ga0126370_10615557Not Available940Open in IMG/M
3300010358|Ga0126370_10764720All Organisms → cellular organisms → Bacteria857Open in IMG/M
3300010358|Ga0126370_11621731All Organisms → cellular organisms → Bacteria620Open in IMG/M
3300010359|Ga0126376_11422037All Organisms → cellular organisms → Bacteria719Open in IMG/M
3300010359|Ga0126376_12962327Not Available524Open in IMG/M
3300010366|Ga0126379_10358332All Organisms → cellular organisms → Bacteria → Proteobacteria1492Open in IMG/M
3300010366|Ga0126379_11477434All Organisms → cellular organisms → Bacteria785Open in IMG/M
3300010375|Ga0105239_10783305All Organisms → cellular organisms → Bacteria1092Open in IMG/M
3300010376|Ga0126381_102191041All Organisms → cellular organisms → Bacteria795Open in IMG/M
3300010376|Ga0126381_103442534All Organisms → cellular organisms → Bacteria622Open in IMG/M
3300010376|Ga0126381_103652805All Organisms → cellular organisms → Bacteria603Open in IMG/M
3300010376|Ga0126381_105032523All Organisms → cellular organisms → Bacteria507Open in IMG/M
3300010392|Ga0118731_112802361All Organisms → cellular organisms → Bacteria569Open in IMG/M
3300010868|Ga0124844_1065605All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1323Open in IMG/M
3300012203|Ga0137399_11124744All Organisms → cellular organisms → Bacteria661Open in IMG/M
3300012361|Ga0137360_11042085All Organisms → cellular organisms → Bacteria706Open in IMG/M
3300012944|Ga0137410_10673594All Organisms → cellular organisms → Bacteria860Open in IMG/M
3300012948|Ga0126375_10307195All Organisms → cellular organisms → Bacteria1104Open in IMG/M
3300012948|Ga0126375_11679059All Organisms → cellular organisms → Bacteria550Open in IMG/M
3300012971|Ga0126369_10386695All Organisms → cellular organisms → Bacteria1433Open in IMG/M
3300012987|Ga0164307_10086800All Organisms → cellular organisms → Bacteria → Proteobacteria1918Open in IMG/M
3300016270|Ga0182036_10870224All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium737Open in IMG/M
3300016294|Ga0182041_10729134All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium881Open in IMG/M
3300016294|Ga0182041_11740081All Organisms → cellular organisms → Bacteria577Open in IMG/M
3300016319|Ga0182033_10194316All Organisms → cellular organisms → Bacteria → Proteobacteria1609Open in IMG/M
3300016319|Ga0182033_10756553All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS80.1854Open in IMG/M
3300016319|Ga0182033_11421953All Organisms → cellular organisms → Bacteria625Open in IMG/M
3300016319|Ga0182033_11807061All Organisms → cellular organisms → Bacteria555Open in IMG/M
3300016357|Ga0182032_10230993All Organisms → cellular organisms → Bacteria1427Open in IMG/M
3300016371|Ga0182034_11991421All Organisms → cellular organisms → Bacteria513Open in IMG/M
3300016404|Ga0182037_10809414All Organisms → cellular organisms → Bacteria808Open in IMG/M
3300016404|Ga0182037_11844961Not Available541Open in IMG/M
3300016422|Ga0182039_10940029All Organisms → cellular organisms → Bacteria773Open in IMG/M
3300016445|Ga0182038_10144260All Organisms → cellular organisms → Bacteria → Proteobacteria1807Open in IMG/M
3300016445|Ga0182038_11010567All Organisms → cellular organisms → Bacteria737Open in IMG/M
3300016445|Ga0182038_11063205Not Available718Open in IMG/M
3300018031|Ga0184634_10419506All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFCSPLOWO2_12_47_11608Open in IMG/M
3300021441|Ga0213871_10310728All Organisms → cellular organisms → Bacteria510Open in IMG/M
3300021560|Ga0126371_12179958All Organisms → cellular organisms → Bacteria668Open in IMG/M
3300021560|Ga0126371_12327793Not Available647Open in IMG/M
3300024288|Ga0179589_10510915All Organisms → cellular organisms → Bacteria558Open in IMG/M
3300025910|Ga0207684_11598598Not Available528Open in IMG/M
3300026320|Ga0209131_1351399All Organisms → cellular organisms → Bacteria548Open in IMG/M
3300027049|Ga0207806_1032113All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium601Open in IMG/M
3300027874|Ga0209465_10114737All Organisms → cellular organisms → Bacteria → Proteobacteria1326Open in IMG/M
3300027874|Ga0209465_10480492Not Available621Open in IMG/M
3300031573|Ga0310915_10186840All Organisms → cellular organisms → Bacteria1445Open in IMG/M
3300031668|Ga0318542_10439279All Organisms → cellular organisms → Bacteria676Open in IMG/M
3300031668|Ga0318542_10474151All Organisms → cellular organisms → Bacteria650Open in IMG/M
3300031681|Ga0318572_10478902All Organisms → cellular organisms → Bacteria741Open in IMG/M
3300031724|Ga0318500_10216038All Organisms → cellular organisms → Bacteria922Open in IMG/M
3300031748|Ga0318492_10328238Not Available799Open in IMG/M
3300031751|Ga0318494_10055579All Organisms → cellular organisms → Bacteria2104Open in IMG/M
3300031764|Ga0318535_10295615All Organisms → cellular organisms → Bacteria725Open in IMG/M
3300031768|Ga0318509_10693297Not Available565Open in IMG/M
3300031797|Ga0318550_10217311All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium926Open in IMG/M
3300031798|Ga0318523_10432871All Organisms → cellular organisms → Bacteria653Open in IMG/M
3300031805|Ga0318497_10168402All Organisms → cellular organisms → Bacteria1204Open in IMG/M
3300031821|Ga0318567_10287850All Organisms → cellular organisms → Bacteria925Open in IMG/M
3300031846|Ga0318512_10350981All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp.738Open in IMG/M
3300031879|Ga0306919_11047504All Organisms → cellular organisms → Bacteria623Open in IMG/M
3300031880|Ga0318544_10332017Not Available591Open in IMG/M
3300031890|Ga0306925_10442078All Organisms → cellular organisms → Bacteria1390Open in IMG/M
3300031910|Ga0306923_11304347All Organisms → cellular organisms → Bacteria770Open in IMG/M
3300031910|Ga0306923_12024925All Organisms → cellular organisms → Bacteria584Open in IMG/M
3300031912|Ga0306921_11102019All Organisms → cellular organisms → Bacteria890Open in IMG/M
3300031912|Ga0306921_11982489All Organisms → cellular organisms → Bacteria621Open in IMG/M
3300031942|Ga0310916_11525372All Organisms → cellular organisms → Bacteria544Open in IMG/M
3300031946|Ga0310910_11507440All Organisms → cellular organisms → Bacteria516Open in IMG/M
3300031947|Ga0310909_10049059All Organisms → cellular organisms → Bacteria3233Open in IMG/M
3300031947|Ga0310909_10472996All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1051Open in IMG/M
3300031954|Ga0306926_12360674Not Available587Open in IMG/M
3300031962|Ga0307479_11108564Not Available757Open in IMG/M
3300032001|Ga0306922_10664803All Organisms → cellular organisms → Bacteria1099Open in IMG/M
3300032001|Ga0306922_11744032All Organisms → cellular organisms → Bacteria615Open in IMG/M
3300032025|Ga0318507_10487264Not Available537Open in IMG/M
3300032059|Ga0318533_10311574All Organisms → cellular organisms → Bacteria1143Open in IMG/M
3300032059|Ga0318533_10765375All Organisms → cellular organisms → Bacteria709Open in IMG/M
3300032059|Ga0318533_11368676All Organisms → cellular organisms → Bacteria517Open in IMG/M
3300032060|Ga0318505_10578880Not Available528Open in IMG/M
3300032076|Ga0306924_10122596All Organisms → cellular organisms → Bacteria → Proteobacteria2958Open in IMG/M
3300032076|Ga0306924_10962953All Organisms → cellular organisms → Bacteria939Open in IMG/M
3300032090|Ga0318518_10412931All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium692Open in IMG/M
3300032090|Ga0318518_10530308All Organisms → cellular organisms → Bacteria602Open in IMG/M
3300032094|Ga0318540_10029435All Organisms → cellular organisms → Bacteria2364Open in IMG/M
3300032261|Ga0306920_101676927All Organisms → cellular organisms → Bacteria901Open in IMG/M
3300032261|Ga0306920_103370999All Organisms → cellular organisms → Bacteria594Open in IMG/M
3300033289|Ga0310914_10655190All Organisms → cellular organisms → Bacteria944Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil28.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil28.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil16.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil10.00%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil4.00%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface2.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.00%
MarineEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine1.00%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.00%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.00%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere1.00%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere1.00%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.00%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300004267Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBioEnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005437Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaGEnvironmentalOpen in IMG/M
3300005454Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136EnvironmentalOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300009488Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaGEnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010392Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385EnvironmentalOpen in IMG/M
3300010868Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)EnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300012987Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MGEnvironmentalOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300018031Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1EnvironmentalOpen in IMG/M
3300021441Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1Host-AssociatedOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300024288Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungalEnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300027049Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 72 (SPAdes)EnvironmentalOpen in IMG/M
3300027874Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031668Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23EnvironmentalOpen in IMG/M
3300031681Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20EnvironmentalOpen in IMG/M
3300031724Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20EnvironmentalOpen in IMG/M
3300031748Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22EnvironmentalOpen in IMG/M
3300031751Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24EnvironmentalOpen in IMG/M
3300031764Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27EnvironmentalOpen in IMG/M
3300031768Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22EnvironmentalOpen in IMG/M
3300031797Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23EnvironmentalOpen in IMG/M
3300031798Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19EnvironmentalOpen in IMG/M
3300031805Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23EnvironmentalOpen in IMG/M
3300031821Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20EnvironmentalOpen in IMG/M
3300031846Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031880Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032025Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20EnvironmentalOpen in IMG/M
3300032059Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27EnvironmentalOpen in IMG/M
3300032060Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032090Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22EnvironmentalOpen in IMG/M
3300032094Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0066396_1006991523300004267Tropical Forest SoilMPLSANHIYFFVSYAVAFLVFGLIGKWYVWPAIRERAPGIALTPLLLYACLRVNGLMFLM
Ga0063356_10145393813300004463Arabidopsis Thaliana RhizosphereMQPTTNQMHFFISYAVAFLAFGLIGKWYVWPNIKDRALKAALTPLLLYACLRVNGLM
Ga0066388_10053215133300005332Tropical Forest SoilMLQSIQAIFPLPSPNLIYFFISYVVAFIALGLTAIWYVWPAIKDHAPKAALTPLLLYSC
Ga0066388_10304307413300005332Tropical Forest SoilMPITSNHVHFFISYAVAFLVFALIARWYLWPRIKDRPPQEALPPFLLYAC
Ga0066388_10527915013300005332Tropical Forest SoilMPLSDNQLHYFASYTVAFVAFGLIGRWYLWPALKDRAPRTALTPLLLYASFRVNGLMFLMPGLVSAQL
Ga0070710_1148339813300005437Corn, Switchgrass And Miscanthus RhizosphereLEITSHYLYFFISYAVAFLVFGLKAKWYVWPALDGRDPKTALTPLLLYACLRVNGLMFLM
Ga0066687_1096751423300005454SoilMWAGSARGTLMQISANLVHFFISYAVAFLAFALIGKWYVWPNIKGRPLKTALSPLLLYACLRVNGLMFVMP
Ga0068859_10201020113300005617Switchgrass RhizosphereMQPTANQMHFFIGYAVAFLAFGLIGKWYVWPNIKDRALKAALTPLLLYACL
Ga0066903_10012100633300005764Tropical Forest SoilMQITANQFHFFLSYAVAFLIFGPIDGKWYVWPSIKNRRLEPALTPLLLYACLRVNGLMFLMPGLVSAALLRRANWLR*
Ga0066903_10903381313300005764Tropical Forest SoilMTLSANHIHFFVSYAVAFLVFGLIGKWYLWPAIRERAPGIALTPLLLY
Ga0114925_1086701423300009488Deep SubsurfaceMPITDNHVYFFISYATSFLVMALIGKWYLYPAVKNLPLKVALTPLLLYACLRVN
Ga0114925_1123148913300009488Deep SubsurfaceMPITDNHIYFLISYATSFLVMALIGKWYVYPAVKNLPLKIAFTPLLLYACLRVNGLTFLMPGVVRN
Ga0126370_1061555713300010358Tropical Forest SoilMPVSENLLHYLICYAVALLVFGLIGKWYLWPAIKDLRPKSALTPLLLYACLRVNGLLFL
Ga0126370_1076472023300010358Tropical Forest SoilMQITANQFHFFLSYAVAFLIFGPIDGKWYVWPSIKNRRLEPALTPLLLYACLRVNGLMFLMPGLVSAALLRRANWL
Ga0126370_1162173113300010358Tropical Forest SoilMSLRSKHSEIAMPLSDHHIHYFISYAMAFLVFGLIGKWYLWPAIKDRSPKIALTPLLLYATLRVNGLMFLMP
Ga0126376_1142203713300010359Tropical Forest SoilVPLSDNHIHYFISYAVAFLGFGLIAKWYLWPAIKDRSPKIALTPLLL
Ga0126376_1296232713300010359Tropical Forest SoilMSHFLYFFISYAVAFVALGLIGKWYLWPAIRDREPKSALIPLLLYACLRVN
Ga0126379_1035833213300010366Tropical Forest SoilMLPSDNQLHFFISYAVAFLVFGLIAKWYIWPSIRDRPPRTALPPFLLYACLRVNGLMFLMPG
Ga0126379_1147743423300010366Tropical Forest SoilMTLSANHIHFFVSYAVAFLVFGLIGKWYLWPAIRERAPGIALTPLLLYACLRVNGLMFLM
Ga0105239_1078330523300010375Corn RhizosphereMQPTANQMHFFIGYAVAFLAFGLIGKWYVWPNIKDRALKAALTPLLLYVPARTD*
Ga0126381_10219104113300010376Tropical Forest SoilVPLSDNHIHYFISYAVALLGFGLIARWYLWPAIKDRSPKIALTPLLLYATLRVNGLM
Ga0126381_10344253413300010376Tropical Forest SoilMTLSANHIYFFVSYAMAFLVFGLIGKWYLWPAIRERAPGIALTPLLLYACLRVNGLMFL
Ga0126381_10365280513300010376Tropical Forest SoilVEPSSNQLYYFISYAVAFLVFGCIANWYLWPAIKDRSPKAALTPLLLYACLRVNGLTFLMPG
Ga0126381_10503252313300010376Tropical Forest SoilMPLSANHIHFFVSYAVAFLVFGLIGKWYVWPAIRERAPGIALTPLLLYSWLRVNGLMFL
Ga0118731_11280236123300010392MarineMEITANHVHFMISYMIAFISFGLIGKWYLWPAIKNRDAKTALSPLLIYATLRVNGLMFLMPGLV
Ga0124844_106560513300010868Tropical Forest SoilMPLSDNQLHYFASYTVAFVAFGLIGRWYLWPALKDRAPRTALTPLLLYASFRVNGLMFLMPGLVSAQLHCPRLLRYRPHMA
Ga0137399_1112474413300012203Vadose Zone SoilVQISANHIHFFISYAVAFTAFGLIARWYIWPAIKDRGPEAALTPLLLY
Ga0137360_1104208513300012361Vadose Zone SoilLEVPVAVSGNQLHFFISYAVAFIAFGLIGKWYLWPAIRDREPKPALTPLLLYACLRVKGL
Ga0137410_1067359413300012944Vadose Zone SoilVRRPILRANAVLITSNHVYFFISYVVAFLACGLIGKWYLWPAIAKRDLRTAFTPLLLYACLRVNGLMF
Ga0126375_1030719523300012948Tropical Forest SoilVPLSDNHIHYFISYAVALLGFGLIARWYLWPALKDRSPKTALTPLLLYATLRVNGLMFLM
Ga0126375_1167905923300012948Tropical Forest SoilMPLSANYVHYFISYVMAFVVCGLIARWYLWPAIKDCSPKVALTPLLLYACFRVNGLMFLM
Ga0126369_1038669513300012971Tropical Forest SoilVPLSGNQIHFFTSYAVAFLVFGLIGKWYLWPAIKDRAPKIALTPLLLYACLRVNGLMFLMPGL
Ga0164307_1008680013300012987SoilMQPTANQMHFFIGYAVAFLAFGLIGKWYVWPNIKDRALKAALTPLLLYACLRLTD*
Ga0182036_1087022413300016270SoilMFLSGNLIRFFICHATAFAAFSLIGKWYLWPAIKDRSLKIALTTPLLLYACLRVNGLMFL
Ga0182041_1072913413300016294SoilMFLSGNLIRFFICYATAFAAFSLIGKWYLWPAIKDRSLKIALTTPLLLYACLRVNGLMFL
Ga0182041_1174008113300016294SoilVQITANHIYFFISYATAFLVFSLIARWYVWPAVKDHDPKTALSPLLLYACLRVNGLMFLMPG
Ga0182033_1019431613300016319SoilVPPSENHIHFFISYAVAFLVFALIAKWYVWPAIKDRSPKIALTPLLLYACLRVNGLMF
Ga0182033_1075655313300016319SoilVPLSGNQIHFFTSYAVAFLVFGLIGKWYLWPAIRERAPGIALTPLLLYACLRVNGLMFLMPG
Ga0182033_1142195313300016319SoilMPLSANHIHFFVSYVMAFLVFGLIGKWYLWPAIRERAPGIALTPLLLYACLRVNGLMFLMPGL
Ga0182033_1180706123300016319SoilVSVSANLIHYFISYAVAFIVFGLIAKWYIWPSIKDRPPASALSPLLLYACLRVNG
Ga0182032_1023099313300016357SoilMPSSNHIHFFISYAVAFLVFGLIGKWYLWPAIKDRAPKIALPPLLLYACLRVNGLMFLMPGL
Ga0182034_1199142123300016371SoilMQLSANHIHFFISYAVAFLVFGLIAKWYLWPAIKDRTPAIALSPLLLYACLRVN
Ga0182037_1080941423300016404SoilMPLSANHIYFFVSYAVAFLVFGLIGKWYLWPAIRERAPGIALTPLLL
Ga0182037_1184496113300016404SoilVPLDNHVHFFISYAVAFLVFALIAKWYVWPAIKDRPPKIALTPLLLYACLRVNGLMFLMP
Ga0182039_1094002913300016422SoilMSLSINQIHFFISYAVAFIVFGLVAKCYIWPSIKNRAAKDALPPFLL
Ga0182038_1014426033300016445SoilMPSSNHIHFFISYAVAFLVFGLIGKWYLWQAIKDRAPKIALPPLLLYACLRVNGLMFLMP
Ga0182038_1101056723300016445SoilMQLSANHIHFFISYAVAFLVFGLIANWYIWPSIKDRPLKSAIPPFLLYACLRVNGLMFLMPGACLA
Ga0182038_1106320533300016445SoilVPLSDNHIRFFVSYAVAFIVFALIAKWYVWPAIKDRPPKIALTPLL
Ga0184634_1041950613300018031Groundwater SedimentMEITSNHVHFFISYVVAFIAFGLIGKWYIWPAVKDRNLTALSPLLLYACLRVNGLMFLMPGL
Ga0213871_1031072813300021441RhizosphereMDGNHIHFFISYAIAFLAFGLIAKWYLWPAIAQRDAKTALTPLLLYACLRVNGLMFLMP
Ga0126371_1217995813300021560Tropical Forest SoilVSLSDNHIHYFISYAVAFLGFGLIARWYLWPAIKDRSPKVALTPLLLYAT
Ga0126371_1232779313300021560Tropical Forest SoilMPVSGNLGRYLVSYALAYIVFILLAKWYIWPSVRDRSPATALTPFLLYACLRVNGLMFLMPGL
Ga0179589_1051091513300024288Vadose Zone SoilVEINSNHIHVCISYAVAFIAFTLIGKWYLWPAISHRTPRAALTPLLLYAC
Ga0207684_1159859823300025910Corn, Switchgrass And Miscanthus RhizosphereMPPSDNQIHFFISYAVAFIVLGLIAKWYLWPAIRDRAPKDALTPLLLYAC
Ga0209131_135139923300026320Grasslands SoilMHISSNQIHFFISYAVAFLVFGLIGKWYLWPRIKDRTPEIALPPFLLYACLRVNGLMFLMSGLVS
Ga0207806_103211313300027049Tropical Forest SoilLSDNQLHYFESYAVAFVAFGLIGRWYLWPALKDRAPRTALTPLLLYASFRVNGLMFLMPGLVS
Ga0209465_1011473713300027874Tropical Forest SoilMQLSANQIHFFISYAVAFLVFGLIANWYIWPSIKDRAPKSALPPFLLYACLRVNGLMFLMPGLVSP
Ga0209465_1048049223300027874Tropical Forest SoilMPITSNHVHFFISYAVAFLVFALIARWYLWPRIKDRPPQEALPPFLLYACLRVNG
Ga0310915_1018684023300031573SoilMPLSANHIYFFLSYAVAFLVFGLIGKWYLWPAIRERAPAIALTPLLLYACLRVN
Ga0318542_1043927913300031668SoilVPLSDNHIHFFISYAVAFLVFALIAKWYVWPAIKDGPPKIALTPLLLYACLRVNGLM
Ga0318542_1047415113300031668SoilVALTGNFIYYFISYCVAYLVFGLIAKWYLWPVIKDRSPKTALTPLLLYACLRVNGLMFLMPG
Ga0318572_1047890223300031681SoilMTLSANHIYFFVSYAVAFLVFGLIGKWYLWPAIRERAPAIALTPLLLYA
Ga0318500_1021603823300031724SoilMPLSANHIYFFVSYAVAFLVFGLIGKWYLWPAIRGRAPGIALTPLLLYA
Ga0318492_1032823813300031748SoilVPLSDNHIHFFISYAVAFLVFALIAKWYVWPAIKDRPPKIALTPLLLYACLR
Ga0318494_1005557943300031751SoilMELSANHVRFFVSYAVAFLAFGLIAKWYLWPKVKDRDPRSALTPFLLYASLRVNGLMFL
Ga0318535_1029561513300031764SoilVHSSANYIHFFVGYIVALLAFGFIGKWYLWPAIRDRAPATALPPLLL
Ga0318509_1069329713300031768SoilMPVSANQLHYMTSVAVALVVFSLVAKWYLWPAVRSRPPAVALPPLLLYACLRVNGLMFLMPGLV
Ga0318550_1021731123300031797SoilMPMSDSQLHYFASYTVAFVAFGLMGRWYLWPALKDRAPRTALTPLLFYASFRVNGLMFLMPGFVSAQ
Ga0318523_1043287123300031798SoilMPLSANHIYFFVSYAVAFLVFGLIGKWYLWPAIRERAPAIALTPLLLYACLRVN
Ga0318497_1016840223300031805SoilMELSANYVRFFVSYAVAFLAFGLIAKWYLWPKVKDRDPRSALTPFLLYASLRVNGLM
Ga0318567_1028785023300031821SoilMELSANYVRFFVSYAVAFLAFGLIAKWYLWPKVKDRDPRSALTPFLLYASLRVNGLMFL
Ga0318512_1035098113300031846SoilVPLSDNQVHFFISYAVAFLVFALIAKWYVWPAIKDRPPKIALTPLLLYAC
Ga0306919_1104750413300031879SoilMSVSSTQIHFFISYAVAFVAFGLVAKWYIWPSIKNRAAKDALPPFLLYACLRVNGLMFLMPGL
Ga0318544_1033201713300031880SoilVPLSDNHIRFFISYAVAFLVFALIAEWYVWPAIKDRRPKIALTP
Ga0306925_1044207823300031890SoilMPLSANHIYFFLSYAVAFLVFGLIGKWYLWPAIRERAPAIALTPLLL
Ga0306923_1130434723300031910SoilMQLSANHIHFFISYAVAFLVFGLIANWYIWPSIKDRPLKSAIPPFLLYACLRVNGLMFLMPG
Ga0306923_1202492523300031910SoilMPSSNHIHFFISYAVAFLVFALIGKWYLWPAIKDRAPKIALPPLLLYACLRVNGLMFLMPGLVS
Ga0306921_1110201923300031912SoilMPSSNHIHFFISYAVAFLVFGLIGKWYLWPAIKDRAPKIALPPLLLCLRVNGLMFLM
Ga0306921_1198248923300031912SoilVEITTNHIYFFISYVTAFLVFALIARWYVWPAVKDRDAKTALSPLLLYACLR
Ga0310916_1152537213300031942SoilMPLSANHIHFFVSYAVAFLVFGLIGKWYVWPAIRERAPGIALTPLLLYACLRVNGLMFLMPGLVSP
Ga0310910_1150744023300031946SoilMPSDIHFFISYAVAFLVLGLIGKWYLWPAIKDRAPKIALPPLLLYGCLRVN
Ga0310909_1004905913300031947SoilMPLSDNQLHYFASYTVAFVAFGLIGRWYLWPALKDRAPRTALTPLLLYASFRVNGLMFLMPGLVSAQLPKA
Ga0310909_1047299633300031947SoilMPLSDNQPHYFASYSVAFVAFGLIGRWFLWPALKDRAPRTALTPLLLYACFRVNGLMFLT
Ga0306926_1236067413300031954SoilVPLSDNHIHFFISYAVAFLVFALIAKWYVWPAIKDRPPKIALTPLLL
Ga0307479_1110856423300031962Hardwood Forest SoilVPLSDNQIHYFISYGMAFLGFGLIGKWYLWPAIKDRAPRTALTPVLLYACLRVNGLMFLMPGLVSRELPRAF
Ga0306922_1066480313300032001SoilVPISNNQLHFFISYAVAFLGFSLIARWYLWPAIRDRAPKNALTPLLLYACLRVNGLMFLMPGLVSR
Ga0306922_1174403223300032001SoilVPLSDNHIHYFISYVVAFLGFGLIGRWYLWPAIKDRSPKIALTPLLLYATLRVNGLMFLM
Ga0318507_1048726423300032025SoilMSANQLHYFVSYSVAFAALGLTGRWYLWPAIKDRAPKTALTPLLLYAGFRVNGLMFL
Ga0318533_1031157433300032059SoilMPLSDNQLHYFASYAVAFVAFGLIGRWYLWPALKDRVPRTALTPLLLYASFRVNGLIFLMPGLVSAQLPK
Ga0318533_1076537513300032059SoilMQLSANHIHFFISYAVAFLVFGLIANWYIWPSIKDRPLKSAIPPFLLYACLRVNG
Ga0318533_1136867613300032059SoilMSLSSNQIHFFISYAVAFIAFGLVAKWYIWPRIKNRAAKEALPPLLLY
Ga0318505_1057888013300032060SoilVPLDNHVHFFISYAVAFLVFALIAKWYVWPAIKDRPPKIALTPLLLYAC
Ga0306924_1012259653300032076SoilVPLDNHSHFFISYAVAFLVFALIAKWYVWPAVKDRPPKIALTPLLLYACLRVNGL
Ga0306924_1096295323300032076SoilMPLSANHIYFFVSYAVAFLVFGLIGKWYLWPAIRGRAPGIALTPLLLYACLRVNG
Ga0318518_1041293123300032090SoilMPMSDSQLHYFASYTVAFVAFGLMGRWYLWPALKDRAPRTALTPLLFYASFRVNGLMFLMPG
Ga0318518_1053030813300032090SoilMTLSANHIYFFVSYAVAFLVFGLIGKWYLWPAIRERAPAIALTPLLLY
Ga0318540_1002943513300032094SoilMPLSDNQLHYFASYTVAFVAFGLIGRWYLWPALKDRAPRTALTPLLFYASFRVNGLMFLMPGFVSA
Ga0306920_10167692713300032261SoilMPLSANHIYFFVSYAVAFLVFGLIGKWYLWPAIRERAPGIALTPLLLYAC
Ga0306920_10337099913300032261SoilMSLSSNQIHFFISYAVAFIVFSLVAKWYIWPSIKNRAAKDALPPLLLYACLRVNGLMFLMPGL
Ga0310914_1065519013300033289SoilMQLSANHIHFFISYAVAFLVFGLIANWYIWPSIKDRPLKSAIPPFLLYAC

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.