NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F104572

Metagenome / Metatranscriptome Family F104572

Go to section:
Overview Alignments Structure & Topology Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F104572
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 38 residues
Representative Sequence MRPIPLLAAGNGVGEPAANRKVERPMSAKGKESVANSH
Number of Associated Samples 93
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 99.00 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 100.00 %
Associated GOLD sequencing projects 91
AlphaFold2 3D model prediction Yes
3D model pTM-score0.15

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (95.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater
(19.000 % of family members)
Environment Ontology (ENVO) Unclassified
(20.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(36.000 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.15
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A95.00 %
All OrganismsrootAll Organisms5.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300003678|Ga0003067J53075_100122Not Available697Open in IMG/M
3300003699|Ga0003070J53073_1000170Not Available809Open in IMG/M
3300003938|Ga0063230_11737074Not Available805Open in IMG/M
3300006937|Ga0081243_1407528Not Available776Open in IMG/M
3300007228|Ga0075175_1422990Not Available791Open in IMG/M
3300007230|Ga0075179_1428916Not Available794Open in IMG/M
3300009257|Ga0103869_10086059Not Available765Open in IMG/M
3300009581|Ga0115600_1010426Not Available788Open in IMG/M
3300009581|Ga0115600_1080341Not Available797Open in IMG/M
3300010081|Ga0127457_1007449Not Available789Open in IMG/M
3300010097|Ga0127501_1018674Not Available887Open in IMG/M
3300010103|Ga0127500_1008319Not Available787Open in IMG/M
3300010104|Ga0127446_1016295Not Available789Open in IMG/M
3300010107|Ga0127494_1013330Not Available799Open in IMG/M
3300010141|Ga0127499_1043746Not Available787Open in IMG/M
3300010142|Ga0127483_1245845Not Available768Open in IMG/M
3300010145|Ga0126321_1384233Not Available792Open in IMG/M
3300010146|Ga0126320_1290189Not Available800Open in IMG/M
3300010857|Ga0126354_1059483Not Available792Open in IMG/M
3300011340|Ga0151652_11852881Not Available788Open in IMG/M
3300012212|Ga0150985_103202426Not Available801Open in IMG/M
3300012372|Ga0134037_1025864Not Available795Open in IMG/M
3300012383|Ga0134033_1024865Not Available794Open in IMG/M
3300012392|Ga0134043_1153378Not Available797Open in IMG/M
3300012396|Ga0134057_1028779Not Available865Open in IMG/M
3300012399|Ga0134061_1331774Not Available867Open in IMG/M
3300012403|Ga0134049_1047059Not Available794Open in IMG/M
3300012469|Ga0150984_112067093All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia912Open in IMG/M
3300016697|Ga0180057_1042940Not Available511Open in IMG/M
3300019199|Ga0187789_1086632Not Available792Open in IMG/M
3300019201|Ga0180032_1113608Not Available796Open in IMG/M
3300019207|Ga0180034_1034072Not Available805Open in IMG/M
3300019208|Ga0180110_1044611Not Available805Open in IMG/M
3300019208|Ga0180110_1114593Not Available800Open in IMG/M
3300019221|Ga0179941_1207651Not Available798Open in IMG/M
3300019229|Ga0180116_1073212Not Available800Open in IMG/M
3300019238|Ga0180112_1075407Not Available539Open in IMG/M
3300019245|Ga0187791_1257769Not Available793Open in IMG/M
3300019246|Ga0172287_1077942Not Available689Open in IMG/M
3300019247|Ga0179937_1134947Not Available792Open in IMG/M
3300019247|Ga0179937_1139359Not Available688Open in IMG/M
3300019249|Ga0184648_1093582Not Available797Open in IMG/M
3300019250|Ga0187790_1209877Not Available784Open in IMG/M
3300019257|Ga0180115_1080644Not Available595Open in IMG/M
3300019259|Ga0184646_1012638Not Available806Open in IMG/M
3300019265|Ga0187792_1567268Not Available790Open in IMG/M
3300020063|Ga0180118_1106664Not Available574Open in IMG/M
3300020067|Ga0180109_1127075Not Available582Open in IMG/M
3300020068|Ga0184649_1314828Not Available501Open in IMG/M
3300020068|Ga0184649_1343599Not Available794Open in IMG/M
3300021269|Ga0210356_117832Not Available866Open in IMG/M
3300021286|Ga0179583_1017246Not Available800Open in IMG/M
3300021307|Ga0179585_1000575Not Available511Open in IMG/M
3300021333|Ga0210324_1000638Not Available786Open in IMG/M
3300021947|Ga0213856_1049744Not Available612Open in IMG/M
3300021947|Ga0213856_1292939Not Available784Open in IMG/M
3300022156|Ga0213934_1026024Not Available782Open in IMG/M
3300022161|Ga0213931_1018141Not Available797Open in IMG/M
3300022166|Ga0213932_1029299Not Available802Open in IMG/M
3300022195|Ga0222625_1747951Not Available783Open in IMG/M
3300023697|Ga0228706_1029871Not Available674Open in IMG/M
3300023700|Ga0228707_1028736Not Available799Open in IMG/M
3300023703|Ga0228708_1076991Not Available506Open in IMG/M
3300024481|Ga0256330_1060527Not Available806Open in IMG/M
3300024483|Ga0255224_1055993Not Available814Open in IMG/M
3300024487|Ga0255222_1031376Not Available788Open in IMG/M
3300024531|Ga0255228_1055337Not Available797Open in IMG/M
3300024533|Ga0256299_1054742Not Available787Open in IMG/M
3300024561|Ga0255288_1083666Not Available714Open in IMG/M
3300024565|Ga0255273_1070745Not Available802Open in IMG/M
3300024572|Ga0255268_1084889Not Available795Open in IMG/M
3300024573|Ga0256337_1086045Not Available790Open in IMG/M
3300025744|Ga0255245_1042064All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila575Open in IMG/M
3300025745|Ga0255244_1021075Not Available787Open in IMG/M
3300026417|Ga0256315_1029686Not Available773Open in IMG/M
3300026571|Ga0255289_1068308Not Available804Open in IMG/M
3300026572|Ga0255270_1087137Not Available787Open in IMG/M
3300026573|Ga0255269_1098939Not Available795Open in IMG/M
3300028112|Ga0256335_1120981Not Available686Open in IMG/M
3300028261|Ga0256316_1042042Not Available801Open in IMG/M
3300028267|Ga0256358_1054130Not Available791Open in IMG/M
3300029640|Ga0206093_102924All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila793Open in IMG/M
3300029652|Ga0206099_106549All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila797Open in IMG/M
3300029659|Ga0206094_113416All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila672Open in IMG/M
3300029697|Ga0256301_1039370Not Available805Open in IMG/M
3300030969|Ga0075394_11885708Not Available795Open in IMG/M
3300031082|Ga0308192_1026673Not Available781Open in IMG/M
3300031114|Ga0308187_10147382Not Available782Open in IMG/M
3300031231|Ga0170824_104561513Not Available816Open in IMG/M
3300031446|Ga0170820_15024756Not Available745Open in IMG/M
3300031469|Ga0170819_10844880Not Available798Open in IMG/M
3300031474|Ga0170818_108840945Not Available817Open in IMG/M
3300031474|Ga0170818_112603878Not Available674Open in IMG/M
3300034447|Ga0370544_09260Not Available718Open in IMG/M
3300034479|Ga0314785_006804Not Available778Open in IMG/M
3300034659|Ga0314780_054417Not Available810Open in IMG/M
3300034659|Ga0314780_057649Not Available795Open in IMG/M
3300034661|Ga0314782_054757Not Available805Open in IMG/M
3300034662|Ga0314783_053326Not Available767Open in IMG/M
3300034668|Ga0314793_043351Not Available801Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater19.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil13.00%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment12.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater6.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil6.00%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil5.00%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine4.00%
PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland4.00%
WetlandEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland3.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Desert → Soil3.00%
Anaerobic Digestor SludgeEngineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge3.00%
WatershedsEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds2.00%
WetlandEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Wetland2.00%
SoilEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil2.00%
GroundwaterEnvironmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater2.00%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil2.00%
Wastewater EffluentEngineered → Wastewater → Nutrient Removal → Unclassified → Unclassified → Wastewater Effluent2.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater1.00%
River WaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.00%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere1.00%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere1.00%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil1.00%
Tropical Rainforest SoilEnvironmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil1.00%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300003678Groundwater microbial communities from S. Glens Falls, New York, USA - water-only treatment rep 1 (Metagenome Metatranscriptome, Counting Only)EnvironmentalOpen in IMG/M
3300003699Groundwater microbial communities from S. Glens Falls, New York, USA - Field experiment aqueous naphthalene treatment rep 1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300003938Wetland microbial communities from Twitchell Island in the Sacramento Delta, California, USA - surface sediment Aug2011 Site C1 Bulk Metatranscriptome (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300006937Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A01 (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300007228Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 8/11/14 A brown RNA (Eukaryote Community Metatranscriptome)EngineeredOpen in IMG/M
3300007230Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 9/18/14 C RNA (Eukaryote Community Metatranscriptome)EngineeredOpen in IMG/M
3300009257Microbial communities of water from Amazon river, Brazil - RCM22EnvironmentalOpen in IMG/M
3300009581Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_9_15_A (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010081Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_0_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010097Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_24_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010103Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_16_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010104Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_16_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010107Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_8_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010141Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_8_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010142Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_4_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010145Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010146Soil microbial communities from California, USA to study soil gas exchange rates - JR-CA-SND metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010857Boreal forest soil eukaryotic communities from Alaska, USA - W1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300011340Combined Assembly of Wetland MetatranscriptomesEnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012372Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_0_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012383Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_4_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012392Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_4_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012396Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_0_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012399Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012403Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_8_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300016697Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES156 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019199Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019201Estuarine microbial communities from the Columbia River estuary - R6.10AS metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019207Estuarine microbial communities from the Columbia River estuary - R.871 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019208Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT231_16_1Ra (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019221Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Illinois, USA ? AD_UKC048_MetaT (Metagenome Metatranscriptome)EngineeredOpen in IMG/M
3300019229Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_1_16_1Ra (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019238Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT466_16_1Ra (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019245Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019246Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_deep_8_15_core_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019247Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Illinois, USA ? AD_UKC028_MetaT (Metagenome Metatranscriptome)EngineeredOpen in IMG/M
3300019249Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019250Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019257Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_16_1Ra (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019259Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019265Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300020063Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT730_16_1Ra (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300020067Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT47_16_1Ra (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300020068Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021269Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States ? S.499 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021286Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16RNAfungal (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021307Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_06_16RNAfungal (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021333Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States ? S.191 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021947Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - G-2016_32 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022156Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022161Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 3-17 MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022166Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022195Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300023697Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 3-17_Aug_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300023700Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17_Aug_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300023703Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17_Aug_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024481Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepC_0h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024483Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepB_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024487Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepB_0h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024531Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepA_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024533Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Miss_RepC_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024561Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_UVDOM_RepA_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024565Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepC_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024572Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepB_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024573Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepA_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300025744Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepB_0h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300025745Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepA_0h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026417Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepA_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026571Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_UVDOM_RepB_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026572Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepB_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026573Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepC_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028112Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepB_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028261Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepB_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028267Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Colum_RepC_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300029640Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20-13C (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300029652Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S3_20-13C (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300029659Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_5-13C (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300029697Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepC_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030969Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 Emin (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031082Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_193 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031114Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031446Fir Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031469Fir Spring Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031474Fir Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300034447Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_119 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034479Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034659Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034661Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R3 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034662Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034668Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0R1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0003067J53075_10012223300003678GroundwaterMRPIALLAAGNGVGEPAAHRKVERPMSVKGKESVANSHSRYYPA
Ga0003070J53073_100017023300003699GroundwaterMRPIALLAAGNGVGEPAAHRKVERPMSVKGKESVANSHSRYYP
Ga0063230_1173707423300003938WetlandMRPTTLLAAGNGVGESSANREVERPMTANGKENVASSHPQLTP
Ga0081243_140752813300006937Tropical Rainforest SoilMRPTTLLAAGNGVGESSASRKVERQMTANGKENVASS
Ga0075175_142299023300007228Wastewater EffluentMRPIPLLAAGNGVGEPAADRKVERPMSVQGKESVANS
Ga0075179_142891623300007230Wastewater EffluentMRPIPLLAAGNGVGEPAADRKVERPMSVQGKESVANSH
Ga0103869_1008605913300009257River WaterMRPIPSLAAKNGVGEPAASNAGRQMPVTGKESVANS
Ga0115600_101042623300009581WetlandMRPTTLLAAGNGDGESSANCKVERQMTANGKENVASS
Ga0115600_108034123300009581WetlandMRPIPLLAAGNGVGEPAAHRKVERPMSAQGKESVANSH
Ga0127457_100744923300010081Grasslands SoilMRPIPLLAAENGVGESSANRKVERQMTAKGKENVASS
Ga0127501_101867423300010097Grasslands SoilMRPIPLLAAENGVGESSANRKVERQMTAKGKENVASSHP
Ga0127500_100831923300010103Grasslands SoilMRPIPLLAAENGVGESSANRKVERQMTAKGKENVASSHPQ
Ga0127446_101629513300010104Grasslands SoilMRPIPLLAAENGVGESSANRKVERPMTANGKENVASS
Ga0127494_101333013300010107Grasslands SoilMRPIPLLAAENGVGESSANRKVERQMTAKGKENVASSH
Ga0127499_104374623300010141Grasslands SoilMRPIPLLAAENGVGESSANRKVERQMTAKGKENVAS
Ga0127483_124584513300010142Grasslands SoilMRPIPLLAAENGVGESSANRKVERPMTANGKENVAS
Ga0126321_138423313300010145SoilMRPTTLLAAGNGVGESSASRKVERPMTANGKENVASS
Ga0126320_129018913300010146SoilMRPIPLLAAENGVGESSANRKVERPMTANGKENVASSHP
Ga0126354_105948313300010857Boreal Forest SoilMRPTPLLAAGNSVGESSANRKVERPMTANGKENVASSH
Ga0151652_1185288113300011340WetlandMRPTPLLAAGNSVGEPSANREVERQMTVNGKENVASSH
Ga0150985_10320242613300012212Avena Fatua RhizosphereMRPIPLLAAENGVGESSANRKVERPMTANGKENERSEER
Ga0134037_102586423300012372Grasslands SoilMRPIPLLAAGNSVGELSANRKVERQMAANGKENVASSHP
Ga0134033_102486523300012383Grasslands SoilMRPIPLLAAENGVGESSANRKVERPMTANGKENVASSH
Ga0134043_115337813300012392Grasslands SoilMRPTTLLAAGNGVGESSASRKVERPMTANGKENVASSHP
Ga0134057_102877923300012396Grasslands SoilMRPIPLLAAENGVGESSANRKVERQMTAKGKENVASSHPQLT
Ga0134061_133177423300012399Grasslands SoilMRPIPLLAAENGVGESSANRKVERQMTAKGKENVASSHPQLTP
Ga0134049_104705913300012403Grasslands SoilMRPIPLLAAENGVGESSANRKVERPMTANGKENVASSQ
Ga0150984_11206709313300012469Avena Fatua RhizosphereMRPIPLLAAENGVGESSANRKVERPMTANGKENVASSHRSEER
Ga0180057_104294013300016697FreshwaterMRPIPLLAAGNGVGEPAADRKVERPMSAKGKESVAN
Ga0187789_108663223300019199PeatlandMRPTPLLAAENSVGESSANRKVERQMTANGKENVASS
Ga0180032_111360813300019201EstuarineMRPIALLAAGNGVGEPAAHRKGERPMSAKGKESVANSH
Ga0180034_103407213300019207EstuarineMRPTTLLAAGNGVGEPAAHRKVERPMSAQGKESVANSHS
Ga0180110_104461113300019208Groundwater SedimentMRPTTLLAAGNGVGESSANRKVERQMTAIGKENVASSHPQLT
Ga0180110_111459323300019208Groundwater SedimentMRPIALLAAGNGVGEPAADRKVERPMSAKGKESVANSHS
Ga0179941_120765123300019221Anaerobic Digestor SludgeMRPIPLLAAGNGVGEPAADRKVERPMSAKGKESVANSHS
Ga0180116_107321213300019229Groundwater SedimentMRPTTLLAAGNGVGESSANRKVERPMTANGKENVASSHPQ
Ga0180112_107540713300019238Groundwater SedimentMRPTTLLAAGNGVGESSANRKVERQMTAIGKENVASS
Ga0187791_125776913300019245PeatlandMRPTPLLAAENSVGESSANRKVERQMTANGKENVASSH
Ga0172287_107794213300019246WetlandMRPIPLLAAGNGVGEPAADRKIERPMSAKGKESVANS
Ga0179937_113494723300019247Anaerobic Digestor SludgeMRPIPLLAAGNGVGEPAADRKVERPMSAKGKESVANS
Ga0179937_113935913300019247Anaerobic Digestor SludgeMRPISLLAAGNGVGEPAAYRKVERQMSAQGKESVANSHSR
Ga0184648_109358213300019249Groundwater SedimentMRPTTLLAAGNGVGESSANRKVERPMTANGKENVASSHP
Ga0187790_120987713300019250PeatlandMRPTTLLAAGNGVGESSASREVERPMTANGKENVA
Ga0180115_108064413300019257Groundwater SedimentMRPIALLAAGNGVGEPAADRKVERPMSAKGKESVANSH
Ga0184646_101263813300019259Groundwater SedimentMRPTTLLAAGNGVGESSANRKVERQMTAIGKENVASSHPQLTP
Ga0187792_156726823300019265PeatlandMRPTPLLAAENSVGESSASREVERPMTANGKENVASS
Ga0180118_110666413300020063Groundwater SedimentMRPTTLLAAGNGVGESSANRKVERQMTANGKENVASSH
Ga0180109_112707513300020067Groundwater SedimentMRPIPLLAAGNGVGEPAANRKVERPMSAKGKESVANSH
Ga0184649_131482823300020068Groundwater SedimentMRPTTLLAAGNGVGESSANRKVERPMTANGKENVASSHPQLTP
Ga0184649_134359913300020068Groundwater SedimentMRPTTLLAAGNGVGESSANRKVERQMTAIGKENVASSH
Ga0210356_11783223300021269EstuarineMRPTTLLAAGNGVGESSANREVERPMTANGKENVASSHP
Ga0179583_101724613300021286Vadose Zone SoilMRPTPLLAAGNSVGESSANRKVERPMTANGKENVASSHP
Ga0179585_100057513300021307Vadose Zone SoilMRPTTLLAAGNGVGESSANRKVERPMTANGKENVASS
Ga0210324_100063823300021333EstuarineMRPIPLLAAGNGVGEPAADRKIERPMSAEGEESVA
Ga0213856_104974413300021947WatershedsMRPITLLAAGNGVGEPAAHRKGERPMSAQGKESVANSHS
Ga0213856_129293913300021947WatershedsMRPTTLLAAGNGVGELSANLRVERPMTAIGKENVASSHP
Ga0213934_102602413300022156FreshwaterMRPIALLAAGNGVGEPAADRKIERPMSVKGKESVANSHS
Ga0213931_101814113300022161FreshwaterMRPIALLAAGNGVGEPAADRKIERPMSVKGKESVANSH
Ga0213932_102929923300022166FreshwaterMRPIALLAAGNGVGEPAADRKIERQMSVKGKESVANSHSR
Ga0222625_174795113300022195Groundwater SedimentMRPTTLLAAGNGVGESSANRKVERQMTAIGKENVA
Ga0228706_102987113300023697FreshwaterMRPIALLAAGNGVGEAAADRKIERPLSVKVKECVATSH
Ga0228707_102873623300023700FreshwaterMRPIALLAAGNGVGEPAADRKIERQMSVKGKESVANSHS
Ga0228708_107699123300023703FreshwaterMRPIALLAAGNGVGEPAADRKIERQMSVKGKESVANSH
Ga0256330_106052723300024481FreshwaterMRPIALLAAGNGVGEPAAHREVERPMSATGKESVANSHSRYY
Ga0255224_105599313300024483FreshwaterMRPTTLLAAGNGVGEPAAHRKVERPMSAQGKESVANSHSRYYPA
Ga0255222_103137613300024487FreshwaterMRPTTLLAAGNGVGEPAAHRKVERPMSAQGKESVAN
Ga0255228_105533723300024531FreshwaterMRPTTLLAAGNGVGEPAAHRKVERPMSAQGKESVANSH
Ga0256299_105474223300024533FreshwaterMRPTTLLAAGNGVGEPAAHRKVERPMSAQGKESVANS
Ga0255288_108366613300024561FreshwaterMRPITLLAAGNGVGEPAAHRKVERPMSAQGKESVANS
Ga0255273_107074513300024565FreshwaterMRPIALLAAGNGVGEPAAHREVERPMSATGKESVANSHS
Ga0255268_108488923300024572FreshwaterMRPIALLAAGNGVGEPAAHREVERPMSATGKESVANS
Ga0256337_108604523300024573FreshwaterMRPIALLAAGNGVGEPAAHREVERPMSATGKESVANSH
Ga0255245_104206413300025744FreshwaterMRPIPLLAAGNGVGEPAADRKVERPMSAKGKESVANSH
Ga0255244_102107523300025745FreshwaterMRPIPLLAAGNGVGEPAADRKVERPMSAKGKESVA
Ga0256315_102968613300026417FreshwaterMRPIPLLAAGNGVGEPAADRKIERPMSAKGKESVANSH
Ga0255289_106830823300026571FreshwaterMRPIALLAAGNGVGEPAAHREVERPMSATGKESVANSHSR
Ga0255270_108713723300026572FreshwaterMRPIALLAAGNGVGEPAAHREVERPMSATGKESVAN
Ga0255269_109893923300026573FreshwaterMRPIALLAAGNGVGEPAAHRKVERPMSAQGKESVANS
Ga0256335_112098113300028112FreshwaterMRPITLLAAGNGVGEPAAHRKVERPMSAQGKESVANSHS
Ga0256316_104204213300028261FreshwaterMRPIPLLAAGNGVGEPAADRKIERPMSAKGKESVANSHSR
Ga0256358_105413013300028267FreshwaterMRPIPLLAAGNGVGEPAADRKVERPMSAQGKESVANS
Ga0206093_10292413300029640SoilMRPIALLAATNGVGDPAAHLRRGRPMSEHGKESVASS
Ga0206099_10654913300029652SoilMRPIALLAATNGVGDPAAHLTVERPMPEHGKESVASSH
Ga0206094_11341613300029659SoilMRPIALLAATNGVGDPAAHLRRGRPMSEHGKESVA
Ga0256301_103937013300029697FreshwaterMRPTTLLAAGNGVGEPAAHRKVERPMSAQGKESVANSHA
Ga0075394_1188570813300030969SoilMRPIPLLAAGNSVGELSANRKVVRPMTVNGKENVAN
Ga0308192_102667313300031082SoilMRPTTLLAAGNGVGESSANRKVERPMTANGKENVA
Ga0308187_1014738223300031114SoilMRPTPLLAAGNSVGELSANRKVVRPMTANGKENVA
Ga0170824_10456151313300031231Forest SoilMRPTTLLAAGNGVGESSANRKVERQMTANGKENVASSHPQLTPGGEEK
Ga0170820_1502475613300031446Forest SoilMRPIPLLAAGNSVGELSANRKVVRPMTVNGKENVAK
Ga0170819_1084488013300031469Forest SoilMRPIPLLAAGNSVGELSANRKVVRPMTVNGKENVANSHPQRK
Ga0170818_10884094513300031474Forest SoilMRPIPLLAAGNSVGELSANRKVVRPMTVNGKENVANSHPQQKKK
Ga0170818_11260387823300031474Forest SoilMRPTTLLAAGNGVGESSANRKVERQMTANGKENVASS
Ga0370544_09260_1_1143300034447SoilMRPTTLLAAGNGVGESSANRKVERPMTANGKENVASSH
Ga0314785_006804_1_1053300034479SoilMRPTTLLAAGNGVGESSANRKVERQMTANGKENVA
Ga0314780_054417_690_8093300034659SoilMRPITLLAAGNGVGEPAADRKVERPMSAQGKESVANSHSR
Ga0314780_057649_678_7943300034659SoilMRPTTLLAAGNGVGESSANRKVERQMTANGKENVASSHP
Ga0314782_054757_688_8043300034661SoilMRPITLLAAGNGVGEPAADRKVERPMSAQGKESVANSHS
Ga0314783_053326_647_7663300034662SoilMRPTTLLAAGNGVGESSANRKVERQMTANGKENVASSHPQ
Ga0314793_043351_688_8013300034668SoilMRPITLLAAGNGVGEPAADRKVERPMSAQGKESVANSH


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.