NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F104608

Metagenome / Metatranscriptome Family F104608

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F104608
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 42 residues
Representative Sequence PPMEGGYDEGYSGGGFGDEPRASGSASPARGRTPVNDLDDDIPF
Number of Associated Samples 68
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 3.00 %
% of genes near scaffold ends (potentially truncated) 96.00 %
% of genes from short scaffolds (< 2000 bps) 89.00 %
Associated GOLD sequencing projects 63
AlphaFold2 3D model prediction Yes
3D model pTM-score0.16

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (58.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(30.000 % of family members)
Environment Ontology (ENVO) Unclassified
(45.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(67.000 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.16
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF01717Meth_synt_2 10.00
PF01541GIY-YIG 4.00
PF07883Cupin_2 4.00
PF03466LysR_substrate 4.00
PF09509Hypoth_Ymh 3.00
PF13614AAA_31 3.00
PF03235DUF262 2.00
PF13151DUF3990 2.00
PF00106adh_short 1.00
PF13470PIN_3 1.00
PF04471Mrr_cat 1.00
PF06094GGACT 1.00
PF14022DUF4238 1.00
PF00107ADH_zinc_N 1.00
PF01636APH 1.00
PF13302Acetyltransf_3 1.00
PF02776TPP_enzyme_N 1.00
PF13175AAA_15 1.00
PF13274DUF4065 1.00
PF07993NAD_binding_4 1.00
PF01878EVE 1.00
PF07366SnoaL 1.00
PF13365Trypsin_2 1.00
PF00561Abhydrolase_1 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG0620Methionine synthase II (cobalamin-independent)Amino acid transport and metabolism [E] 10.00
COG1479DNAse/DNA nickase specific for phosphorothioated or glycosylated phage DNA, GmrSD/DndB/SspE family, contains DUF262 and HNH nuclease domainsDefense mechanisms [V] 2.00
COG1673Predicted RNA-binding protein, contains PUA-like EVE domainGeneral function prediction only [R] 1.00
COG2947Predicted RNA-binding protein, contains EVE domainGeneral function prediction only [R] 1.00

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms58.00 %
UnclassifiedrootN/A42.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300004080|Ga0062385_10374598All Organisms → cellular organisms → Bacteria → Proteobacteria843Open in IMG/M
3300004082|Ga0062384_100024839All Organisms → cellular organisms → Bacteria → Proteobacteria2611Open in IMG/M
3300004152|Ga0062386_100693262All Organisms → cellular organisms → Bacteria → Proteobacteria836Open in IMG/M
3300004152|Ga0062386_101749181Not Available519Open in IMG/M
3300005764|Ga0066903_100317769All Organisms → cellular organisms → Bacteria2483Open in IMG/M
3300005764|Ga0066903_105271292All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium684Open in IMG/M
3300005764|Ga0066903_106961702Not Available587Open in IMG/M
3300006871|Ga0075434_100735558All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1004Open in IMG/M
3300006893|Ga0073928_10071379All Organisms → cellular organisms → Bacteria3013Open in IMG/M
3300009147|Ga0114129_12034217All Organisms → cellular organisms → Bacteria694Open in IMG/M
3300010046|Ga0126384_11841020All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales575Open in IMG/M
3300010359|Ga0126376_10503752All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1121Open in IMG/M
3300010359|Ga0126376_12973769Not Available523Open in IMG/M
3300010360|Ga0126372_10748704All Organisms → cellular organisms → Bacteria961Open in IMG/M
3300010361|Ga0126378_12734846All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium564Open in IMG/M
3300010366|Ga0126379_12082647All Organisms → cellular organisms → Bacteria669Open in IMG/M
3300010366|Ga0126379_12217312All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria650Open in IMG/M
3300010376|Ga0126381_101575755Not Available949Open in IMG/M
3300010376|Ga0126381_104255768Not Available555Open in IMG/M
3300011269|Ga0137392_10501287All Organisms → cellular organisms → Bacteria1008Open in IMG/M
3300011270|Ga0137391_10289888Not Available1413Open in IMG/M
3300012202|Ga0137363_10223810Not Available1520Open in IMG/M
3300012202|Ga0137363_10719174Not Available846Open in IMG/M
3300012202|Ga0137363_11028964Not Available700Open in IMG/M
3300012362|Ga0137361_11070662All Organisms → cellular organisms → Bacteria → Proteobacteria727Open in IMG/M
3300012362|Ga0137361_11090956All Organisms → cellular organisms → Bacteria719Open in IMG/M
3300012922|Ga0137394_10932581Not Available724Open in IMG/M
3300015371|Ga0132258_10936669All Organisms → cellular organisms → Bacteria2188Open in IMG/M
3300016270|Ga0182036_10155587All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1633Open in IMG/M
3300016270|Ga0182036_10926335All Organisms → cellular organisms → Bacteria715Open in IMG/M
3300016294|Ga0182041_10160352Not Available1748Open in IMG/M
3300016294|Ga0182041_10870521All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria808Open in IMG/M
3300016319|Ga0182033_10004721All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD00887207Open in IMG/M
3300016319|Ga0182033_10580413All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium LiPW_15972Open in IMG/M
3300016341|Ga0182035_11064243Not Available719Open in IMG/M
3300016341|Ga0182035_11823113All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobulbaceae → Candidatus Electronema → unclassified Candidatus Electronema → Candidatus Electronema sp. GS551Open in IMG/M
3300016357|Ga0182032_10386821All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium → Agrobacterium vitis1128Open in IMG/M
3300016357|Ga0182032_10391476Not Available1122Open in IMG/M
3300016357|Ga0182032_11122246Not Available675Open in IMG/M
3300016387|Ga0182040_10153521All Organisms → cellular organisms → Bacteria1644Open in IMG/M
3300016404|Ga0182037_11043640Not Available714Open in IMG/M
3300016404|Ga0182037_11495776All Organisms → cellular organisms → Bacteria599Open in IMG/M
3300016422|Ga0182039_11066973Not Available726Open in IMG/M
3300016445|Ga0182038_10102379Not Available2084Open in IMG/M
3300016445|Ga0182038_10910845All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae775Open in IMG/M
3300017955|Ga0187817_10379276All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium902Open in IMG/M
3300020580|Ga0210403_10622216Not Available870Open in IMG/M
3300020580|Ga0210403_11064396All Organisms → cellular organisms → Bacteria → Proteobacteria630Open in IMG/M
3300020581|Ga0210399_10690371Not Available840Open in IMG/M
3300020581|Ga0210399_11407063All Organisms → cellular organisms → Bacteria545Open in IMG/M
3300020583|Ga0210401_10509165All Organisms → cellular organisms → Bacteria1066Open in IMG/M
3300020583|Ga0210401_11309169All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium582Open in IMG/M
3300021168|Ga0210406_10522086All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium936Open in IMG/M
3300021478|Ga0210402_11400423Not Available626Open in IMG/M
3300021560|Ga0126371_10029948All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria5087Open in IMG/M
3300021560|Ga0126371_11641148All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales768Open in IMG/M
3300022527|Ga0242664_1129815Not Available542Open in IMG/M
3300022527|Ga0242664_1134784Not Available535Open in IMG/M
3300022724|Ga0242665_10263825Not Available590Open in IMG/M
3300025910|Ga0207684_10363848Not Available1245Open in IMG/M
3300026538|Ga0209056_10508783Not Available627Open in IMG/M
3300026552|Ga0209577_10611510Not Available648Open in IMG/M
3300027371|Ga0209418_1084985Not Available568Open in IMG/M
3300027603|Ga0209331_1174659All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium501Open in IMG/M
3300027635|Ga0209625_1045575All Organisms → cellular organisms → Bacteria → Proteobacteria978Open in IMG/M
3300027737|Ga0209038_10008862All Organisms → cellular organisms → Bacteria2953Open in IMG/M
3300027824|Ga0209040_10182977Not Available1102Open in IMG/M
3300027824|Ga0209040_10323984All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria741Open in IMG/M
3300031543|Ga0318516_10676057All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium587Open in IMG/M
3300031561|Ga0318528_10013025All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3831Open in IMG/M
3300031679|Ga0318561_10273691Not Available922Open in IMG/M
3300031708|Ga0310686_102805954Not Available1255Open in IMG/M
3300031708|Ga0310686_103736495Not Available739Open in IMG/M
3300031708|Ga0310686_108444655Not Available623Open in IMG/M
3300031719|Ga0306917_11141794Not Available606Open in IMG/M
3300031782|Ga0318552_10067639All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1721Open in IMG/M
3300031796|Ga0318576_10302111All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium756Open in IMG/M
3300031797|Ga0318550_10574438All Organisms → cellular organisms → Bacteria542Open in IMG/M
3300031833|Ga0310917_10378322All Organisms → cellular organisms → Bacteria962Open in IMG/M
3300031835|Ga0318517_10548521All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria520Open in IMG/M
3300031879|Ga0306919_11323673Not Available545Open in IMG/M
3300031890|Ga0306925_11037241Not Available833Open in IMG/M
3300031890|Ga0306925_12081617Not Available532Open in IMG/M
3300031910|Ga0306923_11539084All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales694Open in IMG/M
3300031912|Ga0306921_12188373All Organisms → cellular organisms → Bacteria583Open in IMG/M
3300031912|Ga0306921_12626658All Organisms → cellular organisms → Bacteria519Open in IMG/M
3300031912|Ga0306921_12666347Not Available514Open in IMG/M
3300031942|Ga0310916_10947055Not Available720Open in IMG/M
3300031942|Ga0310916_11353668Not Available584Open in IMG/M
3300031946|Ga0310910_11182419All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria594Open in IMG/M
3300032025|Ga0318507_10062806All Organisms → cellular organisms → Bacteria1489Open in IMG/M
3300032052|Ga0318506_10223880All Organisms → cellular organisms → Bacteria832Open in IMG/M
3300032063|Ga0318504_10334080All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli719Open in IMG/M
3300032094|Ga0318540_10000820All Organisms → cellular organisms → Bacteria → Proteobacteria9557Open in IMG/M
3300032261|Ga0306920_100357007All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2174Open in IMG/M
3300032515|Ga0348332_12930965Not Available806Open in IMG/M
3300033289|Ga0310914_10548721Not Available1044Open in IMG/M
3300033289|Ga0310914_10817582Not Available830Open in IMG/M
3300033289|Ga0310914_10995092All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales739Open in IMG/M
3300033289|Ga0310914_11361562All Organisms → cellular organisms → Bacteria612Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil30.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil26.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil11.00%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil8.00%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil7.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil3.00%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil3.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.00%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere2.00%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.00%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring1.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.00%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter1.00%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300004080Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300004082Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3EnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016387Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022527Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022724Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300026552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)EnvironmentalOpen in IMG/M
3300027371Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027603Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027635Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027737Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027824Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031561Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26EnvironmentalOpen in IMG/M
3300031679Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031782Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20EnvironmentalOpen in IMG/M
3300031796Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24EnvironmentalOpen in IMG/M
3300031797Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23EnvironmentalOpen in IMG/M
3300031833Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178EnvironmentalOpen in IMG/M
3300031835Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300032025Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20EnvironmentalOpen in IMG/M
3300032052Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19EnvironmentalOpen in IMG/M
3300032063Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17EnvironmentalOpen in IMG/M
3300032094Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300032515FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0062385_1037459823300004080Bog Forest SoilASGGPPMEGGYDEGYGDEMPASRPAAPARGRTPVNDLDDDIPF*
Ga0062384_10002483933300004082Bog Forest SoilMEGGYDEGYAGGGFGDEPTGAAAAPVRPRTPVNDLDDDIPF*
Ga0062386_10069326233300004152Bog Forest SoilGAGGPPMEGGYDEGYAGGGFGDEPTGAAAAPVRPRTPVNDLDDDIPF*
Ga0062386_10174918123300004152Bog Forest SoilGGPPMEGGYDEGYAGGGFDDERPAGGSAAPARARTPVNDLDDDIPF*
Ga0066903_10031776953300005764Tropical Forest SoilGPPMEGGYDEGYAGGGFGDEPRASATPTRARTPVNDLDDDIPF*
Ga0066903_10527129213300005764Tropical Forest SoilGGSPMESGYDEGFADEPLASAAAIPARARTPVNDLDDEIPL*
Ga0066903_10696170213300005764Tropical Forest SoilRGAGGPPMEGGYDEGYASGGFGDEPRTAATPARAGTPVNDLDDDIPF*
Ga0075434_10073555813300006871Populus RhizosphereDEGYGGGFGDEPRASGPATPARGRTPVNDLDDDIPF*
Ga0073928_1007137933300006893Iron-Sulfur Acid SpringEGGYDEGGFGDEPRASGSTAPARARTPVNDLDDDIPF*
Ga0114129_1203421723300009147Populus RhizosphereGYDEGYAGGGFGDEPRTSATPARSRTPVNDLDDDIPF*
Ga0126384_1184102013300010046Tropical Forest SoilGPPIEGGYDEGYGGGFGDEPAARGSATPTRARTPVNDLDDDIPF*
Ga0126376_1050375223300010359Tropical Forest SoilGGARGAGAPSIEGGYDEGFADEPRASATAMPARGRTPVNDLDDDIPF*
Ga0126376_1297376913300010359Tropical Forest SoilAGGPPMEGGYDEGYAGGGFDDERPAVGSSAPSRARSPVNDLDDDIPF*
Ga0126372_1074870423300010360Tropical Forest SoilAIEAGYDEGFADEPRAPAAAAPARSRALTDDLDDDIPF*
Ga0126378_1273484623300010361Tropical Forest SoilRGAGGSPMESGYDEGFADEPLASAAAIPARARTPVNDLDDDIPF*
Ga0126379_1208264713300010366Tropical Forest SoilPPIEGGYDEGYAGGGFGDEPTAAVTPARARTPVNDLDDDIPF*
Ga0126379_1221731223300010366Tropical Forest SoilGGYDEGYAGRGFDDEPRLLHPPRGRTPVNDLDHDIPF*
Ga0126381_10157575513300010376Tropical Forest SoilMESGYDEGFADEPLASAAAIPARARTPVNDLDDDIPF*
Ga0126381_10425576823300010376Tropical Forest SoilGYGGGFDDERPSPGSATPARARPPVNYPDDDIPF*
Ga0137392_1050128713300011269Vadose Zone SoilPPAEGGYDEGYAGGGFGDEPRPSGPAAPARGRTPVNDLDDDIPF*
Ga0137391_1028988813300011270Vadose Zone SoilGGYDEAYAGSGFGDEPRTASPAPARSRTPVNDLDDDIPF*
Ga0137363_1022381013300012202Vadose Zone SoilGYDEGYAGGGFGDEPRTAATPAPARGRTPVNDLDDDIPF*
Ga0137363_1071917423300012202Vadose Zone SoilDGARGAGGSPSIEGGYDEAYSGGGLGDEPRAAATPARTRTPVNDLDDDIPF*
Ga0137363_1102896423300012202Vadose Zone SoilSARGAGGPPIEGGYDEGYTGGGFGDEPRAAATPAPARGRTPVNDLDGNIAS*
Ga0137361_1107066223300012362Vadose Zone SoilDSARGAGGPPIEGGYEEGYAGGGFGDEPRAAATPAPARGRTPVNDLDDDIPF*
Ga0137361_1109095613300012362Vadose Zone SoilIEGGYDEGFAGGGFGDEPRTAATPARGRTPVNDLDDDIPF*
Ga0137394_1093258113300012922Vadose Zone SoilGPAMEGGYDEGYSGGGLGDEPRASGATAPARGRTPVNDLDDDIPF*
Ga0132258_1093666953300015371Arabidopsis RhizosphereLDSARGTGGPPVEGGYDEGYAGGGFGDEPRPAAAPARSRTPVNDLDDDIPF*
Ga0182036_1015558713300016270SoilPPMEGGYDEGYSGGGFGDEPRASGSASPARGRTPVNDLDDDIPF
Ga0182036_1092633523300016270SoilGAGGPPMEGGYDEGYGSGFDDEPTTRSSAAPARARTPVNDLDDDIPF
Ga0182041_1016035213300016294SoilGGPPMEGGYDEGYAGGGFDDEPAARGSAAPARARTPVNDLDDDIPF
Ga0182041_1087052123300016294SoilEGGYEEGFSGGGFGDEPRSNATPARGRTPVNDLDDDIPF
Ga0182033_1000472193300016319SoilGYDEGYTGGGFGDEPRTSTTPARSRTPVNDLDDDIPF
Ga0182033_1058041323300016319SoilEGYAGGGFDDEPATRGSAAPARVRTPVNDLDDDIPF
Ga0182035_1106424313300016341SoilRGAGGPPMEGGYDDSFGGGFDDEPTARSSATPTRARTPVNDLDDDIPF
Ga0182035_1182311323300016341SoilAGGPPMEGGYDEGYAGGGFDEERPASGSAAPARARTPVNDLDDDIPF
Ga0182032_1038682123300016357SoilGGPPMEGGYDEGYAGGGFDDERPAGATAPIRARTPVNDLDDDIPF
Ga0182032_1039147623300016357SoilGPPMEGGYDEGYAGGGFDDEPAARGSAAPARARTPVNDLDDDIPF
Ga0182032_1112224633300016357SoilMEGGYDEGYGGGFADEPRASGSASPARGRTPINDLDDDIPF
Ga0182040_1015352113300016387SoilEGYGSGFDDEPTTRSSAAPARARTPVNDLDDDIPF
Ga0182037_1104364013300016404SoilDEGYGGGFADEPTTRGSAAPARARTPVNDLDDDIPF
Ga0182037_1149577623300016404SoilEGYGGGFDDERRAGCSATPARAKTSVNDLDDDIPF
Ga0182039_1106697323300016422SoilPMEGGYDEGYAGGGFDDERPAGATTPIRARTPVNDLDDDIPF
Ga0182038_1010237913300016445SoilAGGPPMEGGYDEGYGSGGFDDEPAARSSAAPARARTPVNDLDDDIPF
Ga0182038_1091084523300016445SoilAGGPPMEGGYDEGYGGGFGDEPTARSSTAPARARTPVNDLDDDIPF
Ga0187817_1037927633300017955Freshwater SedimentEGGYDEGYGDEMPASRPATPARGRTPVNDLDDDIPF
Ga0210403_1062221613300020580SoilMEGGYDEGYAGGGFGDEPRATATPAPTRGRTPVNDLDDDIPF
Ga0210403_1106439613300020580SoilDESYAGGGFGDEPRATATPAAPARARTPVNDLDDDIPF
Ga0210399_1069037113300020581SoilELTMLDGARGAGGPPIEGGYDEGGFGDEPRASGSAPPARGRTPVNDLDDDIPF
Ga0210399_1140706323300020581SoilEGGYDEGHAGGGFVDEPRTSGPATPARGRTPVNDLDDDIPF
Ga0210401_1050916523300020583SoilGARGAGGPPIEGGYDEGGFGDEPRASGSAPPARGRTPVNDLDDDIPF
Ga0210401_1130916913300020583SoilGPPMEGGGSDEGYASGGFGDEPRTSGPATPARGRTPVNDLDDDIPF
Ga0210406_1052208623300021168SoilDEGYAGGGFGDEPRTSGPATPARGRTPVNDLDDDIPF
Ga0210402_1140042323300021478SoilPIEGGSDEGYAGGGFGDEPRTSGPATPARGRTPVNDLDDDIPF
Ga0126371_1002994873300021560Tropical Forest SoilSGIDDEYGGAGFGNESARAATVSPRARTPVNDLDDDIPF
Ga0126371_1164114833300021560Tropical Forest SoilGELTMLDGAGGAGRPAMEGGFDDEPATRGSAPPARARTSVNDLDDDIPF
Ga0242664_112981513300022527SoilPIEGSYDEGFAGGGFGDEPRTAATPARSRTPVNDLDDDIPF
Ga0242664_113478413300022527SoilGGPPMETGYDEGGFGDEPRASGPTAPARGRTSVNDLDDDIPF
Ga0242665_1026382523300022724SoilEGGHDEGYAGGGFGDEPRTSATPARSRTPVNDLDDDIPF
Ga0207684_1036384823300025910Corn, Switchgrass And Miscanthus RhizosphereDEGFAHGGFGDEPRASGPATPVRGRTPVNDLDDDIPF
Ga0209056_1050878313300026538SoilGFGGGGFGDEPRTSGPAAPARGRTPVNDLDDDIPF
Ga0209577_1061151013300026552SoilEGYGGGFGDEPRASGPATPARGRTPVNDLDDDIPF
Ga0209418_108498513300027371Forest SoilARGAGGSPAIEGGYDEGGFGDEPRGSSPVAPARGRTPVNDLDDDIPF
Ga0209331_117465913300027603Forest SoilEGYAGGGFGDEPRTSGPATPARGRTPVNDLDDDIPF
Ga0209625_104557523300027635Forest SoilPPIEGGSDEGYAGGGFGDEPRTSGPATPARGRTPVNDLDDDIPF
Ga0209038_1000886243300027737Bog Forest SoilGAGGGPPIEGGYDEGGFGDEPRTSSTATPARGRTPVNDLDDDIPF
Ga0209040_1018297723300027824Bog Forest SoilPPVEGGYDEGYAGGGFGDEPSSPAATAPARARTPVNDLDDDIPF
Ga0209040_1032398423300027824Bog Forest SoilMLDAAGAGGPPVEGGGFDDERPAGGSGAPARAKTPVNDLDDDIPF
Ga0318516_1067605713300031543SoilEGGYDDSFGGGFDDEPAARSSAAPARARTPVNDLDDDIPF
Ga0318528_1001302513300031561SoilYDEGYSGGGFGDEPRASGSASPARGRTPVNDLDDDIPF
Ga0318561_1027369113300031679SoilSGGPPMDGDYDEGYGAFGGEPASRPAAPARGRTPVNDLDDDIPF
Ga0310686_10280595413300031708SoilGGPPIEGGYDEGYGDEMPASRPATPARGRTPVNDLDDDIPF
Ga0310686_10373649513300031708SoilGELTMLDGARGGTAGGPPMDAGYDEGFGDEMPPPRSSPATPSRGARKPVNDLDDDIPF
Ga0310686_10844465513300031708SoilPPVEGGYDEGYGDEMPASRPATPARGRTPVNDLDDDIPF
Ga0306917_1114179413300031719SoilGPPTEGGYEEGFSGGGFGDEPRSNATPARGRTPVNDLDDDIPF
Ga0318552_1006763933300031782SoilYDEGYGGGVEDERRADSSAALARAKTAVDHLDDDIPF
Ga0318576_1030211123300031796SoilGYDVGYSGGGFGDEPRASGSASPARGRTPVNDLDDDIPF
Ga0318550_1057443813300031797SoilPMEGGYDEGYGSGFDDEPTTRSSAAPARARTPVNDLDDDIPF
Ga0310917_1037832223300031833SoilRGAGGPPMEGGYDEGYGSGFDDESAARGSAAPVRARTPVNDLDDDIPF
Ga0318517_1054852113300031835SoilPTEGGYEEGFSGGGFGDEPRSNAAPARGRTPVNDLDDDIPF
Ga0306919_1132367333300031879SoilEGGYDEGFAGGGFDDERPAGGSATPARTRTPVNDLDDDIPF
Ga0306925_1103724123300031890SoilGYDEGYAGGGFDDERPAGGSAAPARARTPVNDLDDDIPF
Ga0306925_1208161713300031890SoilGGPPMEGGYDEGYAGGGFDDEPTTRGSAAPARARTPVNDLDDDIPF
Ga0306923_1153908413300031910SoilYDEGYAGGGFDDERPTGGSTAPARARTPVNDLDDDIPF
Ga0306921_1218837333300031912SoilGGYDEGYAGGGFDDQRPTGGATTPALRTPVNDLDDDIPF
Ga0306921_1262665823300031912SoilGPPMEGGYDEGYAGGGFDDERPASASAAPARARTPVNDLDDDIPF
Ga0306921_1266634713300031912SoilEGFAGGGFDDERPAGGSATPARTRTPVNDLDDDIPF
Ga0310916_1094705513300031942SoilGAGGPPMEGGYDEGYAGGGFDDEPTTRGSSAPARARTPVNDLDDDIPF
Ga0310916_1135366813300031942SoilMEGGYDEGYAGGGFDDEPRASGPGAPARARTPVNDLDDDIPF
Ga0310910_1118241923300031946SoilEGYAGGGFDDEPTARGSAAPARARTPVNDLDDDIPF
Ga0318507_1006280623300032025SoilAGGARGAGGPPMEGGYDEGFGDEPAGSAVTPARTRTPVNDLDDDIPF
Ga0318506_1022388013300032052SoilMEGGYDEGYAGGGFGDEPTGAAAAPVRARTPVNDLDDDIPFLT
Ga0318504_1033408013300032063SoilVVAAFHRRAAGGPPMEGGYDEGYSGGGFGDEPRASGSASPARGRTPVNDLDDDIPF
Ga0318540_10000820103300032094SoilMEGGYDEGFGDEPAGSAVTPARTRTPVNDLDDDIPF
Ga0306920_10035700763300032261SoilEGYGGGGFDDERPTGGSATPARARTPVNDLDDDIPF
Ga0348332_1293096533300032515Plant LitterGPPMDAGYDEGFGDEMPPPRSSPATPSRGARKPVNDLDDDIPF
Ga0310914_1054872113300033289SoilEGGYDEGYAGGGFDDEPTTRGSAAPARARTPVNDLDDDIPF
Ga0310914_1081758213300033289SoilGARGGGAPSIEGGYDEGFADEPRSSAATIPARGRTPVNDLDDDIPF
Ga0310914_1099509223300033289SoilEGFAGGGFDDEPTTRGSAAPARARTPVNDLDDDIPF
Ga0310914_1136156213300033289SoilARGAGGPPMEGGYDEGYAGGGFDDERPAGATAPIRARTPVNDLDDDIPF

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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