Basic Information | |
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Family ID | F104637 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 100 |
Average Sequence Length | 40 residues |
Representative Sequence | MILSNRFWRSVTWLVRLDMAIGIAIAVGLLLWLMWH |
Number of Associated Samples | 83 |
Number of Associated Scaffolds | 100 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 64.00 % |
% of genes near scaffold ends (potentially truncated) | 21.00 % |
% of genes from short scaffolds (< 2000 bps) | 75.00 % |
Associated GOLD sequencing projects | 77 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.49 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (73.000 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (14.000 % of family members) |
Environment Ontology (ENVO) | Unclassified (37.000 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (58.000 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 53.12% β-sheet: 0.00% Coil/Unstructured: 46.88% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.49 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Soil Soil Vadose Zone Soil Tropical Forest Soil Grasslands Soil Surface Soil Peatlands Soil Soil Agricultural Soil Soil Grasslands Soil Soil Forest Soil Soil Hardwood Forest Soil Soil Soil Tropical Forest Soil Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Agricultural Soil Arabidopsis Rhizosphere Avena Fatua Rhizosphere Tabebuia Heterophylla Rhizosphere Switchgrass Rhizosphere Switchgrass Rhizosphere Tabebuia Heterophylla Rhizosphere Populus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Boreal Forest Soil Tropical Rainforest Soil |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
GPIPI_03516820 | 2088090014 | Soil | MSDGLKTMILSNRFWRSVTWLVRLDMAVGIAIAVALLLWLMWX |
GPIPI_01022660 | 2088090014 | Soil | MSDGLKTMILSNRFWRSVTWLVRLDMAVGIAIAVALLLWLMW |
KansclcFeb2_01266830 | 2124908045 | Soil | MTLSDRFWRSVTLLVRLDMAAGIAITVGLMFWLMWH |
INPgaii200_09935861 | 2228664022 | Soil | MSRSDRFWRGVTLLVRLDMAAGIAIAAGLLLVLVLVWH |
AF_2010_repII_A100DRAFT_10429512 | 3300000655 | Forest Soil | MSXSDRFWRSVTLLVRLDMAACIAIAAGLLLVLVWH* |
AP72_2010_repI_A100DRAFT_10010387 | 3300000837 | Forest Soil | MTLSDRFWRSVTLLVRLDMAAGIAITAGLVFWLMWH* |
JGI12627J18819_102283561 | 3300001867 | Forest Soil | KTMILSNRFWRSVTWLVRLDMAVGIAIAVALLLWLMWH* |
Ga0062595_1008078451 | 3300004479 | Soil | VESSALRMSDGLKTMILSNRFWRSVTWLVRLDMAVGIAIAVALLLWLMWH* |
Ga0066673_105330712 | 3300005175 | Soil | MSEGPRTMILSNRFWRSVTWWVRLDMAICIAIAVGLLLWLMWH* |
Ga0066388_1017394841 | 3300005332 | Tropical Forest Soil | MSEGQRTMILSNRFWRSVTWLVRLDMAIGIAIAVGLLLWLMWH* |
Ga0066388_1029148872 | 3300005332 | Tropical Forest Soil | MSHGQMTMILSNRFWRSITWLVRLDIAASIVIAVGLLLWLMWH* |
Ga0066388_1030919872 | 3300005332 | Tropical Forest Soil | LEGEERGMTRQEQERATMLSHRFWRTLTCLVRLDMAAGIILAVGLLLWLKWH* |
Ga0066388_1056583772 | 3300005332 | Tropical Forest Soil | MSHGLMTMVLSNRFWRSMTWLVRLDIAASIVIAVGLLLWLMWH* |
Ga0066388_1071194502 | 3300005332 | Tropical Forest Soil | MSAGLRTMILSNRLWRSVTWLVRLDMAMCIAVAVGLLLWLMWH* |
Ga0070668_1013367972 | 3300005347 | Switchgrass Rhizosphere | MSDGLKTMILSNRFWRSVTWLVRLDMAVGIAIAVALLLWLMWP* |
Ga0070674_1015238352 | 3300005356 | Miscanthus Rhizosphere | MSDGPKTMILSNRFWRSVTWLVRLDMAVGIVIAAALLLWLMWH* |
Ga0008090_100897255 | 3300005363 | Tropical Rainforest Soil | MSEGLMTMIPSNRFWRSVTWLVRLDMAICIAIAVGLPLWLMWH* |
Ga0070709_103047102 | 3300005434 | Corn, Switchgrass And Miscanthus Rhizosphere | MSDGLKTMILSNRFWRSVTWLVRLDMAVGIAIAVALLLWLMWH* |
Ga0070710_100579622 | 3300005437 | Corn, Switchgrass And Miscanthus Rhizosphere | MSDGPKTMILSNRFWRSVTWLVRLDMAVGIAIAVALLLWLMWH* |
Ga0070711_1016297711 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | VESSALRMSDGPKTMILSNRFWRSVTWLVRLDMAVGIVIAAALLLWLMWH* |
Ga0070733_100397382 | 3300005541 | Surface Soil | VATIISRRFWRTITLSVRLDIAAGIATTAGLLLWLTWH* |
Ga0070695_1004789702 | 3300005545 | Corn, Switchgrass And Miscanthus Rhizosphere | MRVGEAITMTRMAGFWRALGLLVRLDMAAGIAITAALLLWLTWH* |
Ga0066699_112064372 | 3300005561 | Soil | MILSNRFWRSVTWWVRLDMAICIAIAVGLLLWLMWH* |
Ga0066654_107190042 | 3300005587 | Soil | MILSNRFWRSVTWLVRLDIAVCIAIAVGLPLWLVWH* |
Ga0066905_1006654882 | 3300005713 | Tropical Forest Soil | MILSDRFWRSVTVMVRLDMAAGIAVAAGLLLWLMWH* |
Ga0066905_1007073452 | 3300005713 | Tropical Forest Soil | MTPSDRFWRSVTLLVRLDMAAGIAITAGLVFWLMWH* |
Ga0066905_1009414772 | 3300005713 | Tropical Forest Soil | MMTVSDRFWRSVTLLVRLDMAAGIAITAGLMFWLMWH* |
Ga0066903_1001289382 | 3300005764 | Tropical Forest Soil | MTPSNRFWRGITWLVRLDIAVCIAIAAGLLLWLKWH* |
Ga0066903_1062127072 | 3300005764 | Tropical Forest Soil | MESGALRMSAGPRTMILSNRFWRSVTWLVRLDMAIGIAIAVGLLLWLMWH* |
Ga0066903_1068382622 | 3300005764 | Tropical Forest Soil | MSEGLRTMILSNPFWRSVTWLVRLDMANGHVHRLAVGLLLWLMWH* |
Ga0066903_1077025522 | 3300005764 | Tropical Forest Soil | MTLSDRFWRSVILLVRLDMAAGIAITAGPVFWLMWH* |
Ga0070766_107764462 | 3300005921 | Soil | VATTISRRFWRTITLSVRLDIAAGIATTAGLLLWLTWH* |
Ga0081455_100639672 | 3300005937 | Tabebuia Heterophylla Rhizosphere | MTRQNVNELMMLSHRFWHRLTWLVRLDMAAGIALAVGLLLWLKWH* |
Ga0081538_100266282 | 3300005981 | Tabebuia Heterophylla Rhizosphere | MTRQNVNELMMLSHRFWHRLAWLVRLDMAVGIALAVGLLLWLKWH* |
Ga0081540_10076651 | 3300005983 | Tabebuia Heterophylla Rhizosphere | MESGALRVSDGLRTMILSNPFWRSATWLVRLDIAASIVIAAGL |
Ga0070715_100017463 | 3300006163 | Corn, Switchgrass And Miscanthus Rhizosphere | MILSNRFWRSVTWLVRLDMAVGIAIAVALLLWLMWH* |
Ga0075433_100804584 | 3300006852 | Populus Rhizosphere | MSRSDRFWRGVTLLVLLDMAAGIAIAAGLLLVLVWH* |
Ga0075425_1010626632 | 3300006854 | Populus Rhizosphere | MSEGLRAMILSNRFWRNVTWLVRLDMAICIAIAAGLLLWLTWH* |
Ga0075434_1000956102 | 3300006871 | Populus Rhizosphere | MSEGLRAMILSNRFWRNVTWLVRLDMAICIVIPAGLLLWLMWH* |
Ga0074063_101387062 | 3300006953 | Soil | MIRSDRFWRGVTLLVRLDMAAGIAIAAGLLLVLVWH* |
Ga0079219_101109402 | 3300006954 | Agricultural Soil | MNQGLRAMILSNRFWRNVTWLVRLDMAICIVIPAGLLLWLMWH* |
Ga0114129_102597102 | 3300009147 | Populus Rhizosphere | MILSNRFWRSVTWLVRLDMAVGIVIAAALLLWLMWH* |
Ga0116224_103227342 | 3300009683 | Peatlands Soil | MIVSGRFWRGLTLLARADMAASIAIAAGLLLWLTWHS* |
Ga0126374_100142773 | 3300009792 | Tropical Forest Soil | MSRSDRFWRGVTLLVRLDMAAGIAIAAGLLLVLVWH* |
Ga0126374_107586132 | 3300009792 | Tropical Forest Soil | MEKGALRMSHGLMTMVLSNRFWRSMTWLVRLDIAASIVIAVGLLLWLMWH* |
Ga0126384_113662442 | 3300010046 | Tropical Forest Soil | MVVSKRFWRSITLVVRLDIAACIAIAAGLLLWLTWD* |
Ga0126384_114035932 | 3300010046 | Tropical Forest Soil | MTISPRFWRVATLLVRLDIATGILLATGLWLWLTWH* |
Ga0134082_105473991 | 3300010303 | Grasslands Soil | MESGALRMNDGPRTTILSNRFWRSVTWWVRLDMAICIAIAVGLLLWLMWH* |
Ga0126376_132211222 | 3300010359 | Tropical Forest Soil | MTVSSRFWRAVTLLVRLDMAAGITIAAALFLFLTWR* |
Ga0126377_124852312 | 3300010362 | Tropical Forest Soil | MTISPRFWRAVTLLVRLDVAAGIAIAAALFLFVTWH* |
Ga0126379_114740142 | 3300010366 | Tropical Forest Soil | MTLSDRFWRSVTVLVRLDMAAGIAIAAGLLLWLMWH* |
Ga0126381_1001624184 | 3300010376 | Tropical Forest Soil | MESGALRMSEGLMTMIPSNRFWRSVTWLVRLDMAICIAIAVGLPLWLMWH* |
Ga0126381_1002422511 | 3300010376 | Tropical Forest Soil | MAISPRFWRAATLLVRLDMAAGITLAAALLLFLTWH* |
Ga0126383_130617891 | 3300010398 | Tropical Forest Soil | MSGSDRFWRSVTLLVRLDMAACIAIAAGLLLVLVWH* |
Ga0126350_109043632 | 3300010880 | Boreal Forest Soil | MRVTPRFWRSVTLLVRLDMAACITLAAALFLFSTWH* |
Ga0137365_100553242 | 3300012201 | Vadose Zone Soil | MTLSDRLWRSVTVLVRLDMAAGIAIAAGLVLWLMWH* |
Ga0137363_112111432 | 3300012202 | Vadose Zone Soil | MTLSDRFWRSVTVVVRLDMAAGIAIAAGLLLWLMWH* |
Ga0137374_100470492 | 3300012204 | Vadose Zone Soil | MTLSDWLWRSVTVLVRLDMAAGIAIAAGLVLWLMWH* |
Ga0150985_1181750791 | 3300012212 | Avena Fatua Rhizosphere | ASWTPRLWRGLTLLVRLDIAASVTMTAALLLWLTWH* |
Ga0137372_101609922 | 3300012350 | Vadose Zone Soil | VRTMTLSDRLWRSVTVLVRLDMAAGIAIAAGLVLWLMWH* |
Ga0137360_101507453 | 3300012361 | Vadose Zone Soil | MTLSDRLWRSVTVFVRLDMAAGIAIAAGLVLWLMWH* |
Ga0164303_100983813 | 3300012957 | Soil | MSDGPKTMILSNRFWRSVTWLVRLDMAVGIAIAVALLLWLMW |
Ga0126369_108020562 | 3300012971 | Tropical Forest Soil | MESGALRMSAGLRTMILSNRLWRSVTWLVRLDMAMCIAVAVGLLLWLMWH* |
Ga0126369_110441352 | 3300012971 | Tropical Forest Soil | MVVSKRFWRSITLLVRLDIAACIAIAAGLLLWLTWD* |
Ga0163162_132601552 | 3300013306 | Switchgrass Rhizosphere | MESGALRVSDGLRTLILSNRFWRNVTWLVQLDMAVCIAITVGLLLWLMWH* |
Ga0132258_106561603 | 3300015371 | Arabidopsis Rhizosphere | MSEGLRAMILSNRFWRNVTWLVPLDMAICIVIAAGLLLWLMWH* |
Ga0066667_106741903 | 3300018433 | Grasslands Soil | MILSNRFWRSVTWWVRLDMAICIAIAVGLLLWLMWH |
Ga0210406_110462672 | 3300021168 | Soil | MESGALRVSDGPMTMILSNRFWRSVTWLVRLDIAASIVIAVGLLLWLMWH |
Ga0210384_104375081 | 3300021432 | Soil | MESGALRVSDGPMTMILSNRFWRSVTWLVRLDIAASIVIAVGLLL |
Ga0210402_100086405 | 3300021478 | Soil | MTMILSNRFWRSVTWLVRLDIAASIVIAVGLLLWLMWH |
Ga0126371_101378484 | 3300021560 | Tropical Forest Soil | MILSNRFWRSVTWLVRLDMAIGIAIAVGLLLWLMWH |
Ga0126371_111761323 | 3300021560 | Tropical Forest Soil | MTLSDRFWRSVTVLVRLDMAAGIAIAAGLLLWLMWH |
Ga0207692_100806681 | 3300025898 | Corn, Switchgrass And Miscanthus Rhizosphere | LKTMILSNRFWRSVTWLVRLDMAVGIAIAVALLLWLMWH |
Ga0207699_100457404 | 3300025906 | Corn, Switchgrass And Miscanthus Rhizosphere | MILSNRFWRSVTWLVRLDMAVGIAIAVALLLWLMWH |
Ga0207664_101653482 | 3300025929 | Agricultural Soil | RMSDGPKTMILSNRFWRSVTWLVRLDMAVGIAIAVALLLWLMWH |
Ga0207665_101160273 | 3300025939 | Corn, Switchgrass And Miscanthus Rhizosphere | MSDALKTMILSNRFWRSVTWLVRLDMAVGIAIAVALLLWLMWH |
Ga0207668_111648282 | 3300025972 | Switchgrass Rhizosphere | MSDGLKTMILSNRFWRSVTWLVRLDMAVGIAIAVALLLWLMWP |
Ga0207675_1021924272 | 3300026118 | Switchgrass Rhizosphere | MSDGLKTMILSNRFWRSVTWLVRLDMAVGIVIAAALLLWLMWH |
Ga0209329_11546382 | 3300027605 | Forest Soil | MIRSDWFWRGVTLLVRLDMAAGIAIAAGLLLVLVWH |
Ga0209466_10474772 | 3300027646 | Tropical Forest Soil | MTLSDRFWRSVTLLVRLDMAAGIAITAGLVFWLMWH |
Ga0208696_10473712 | 3300027696 | Peatlands Soil | MIVSGRFWRGLTLLARADMAASIAIAAGLLLWLTWHS |
Ga0209167_108075802 | 3300027867 | Surface Soil | VATIISRGFWRTITLSVRLDIAAGIATTAGLLLWLTWH |
Ga0307299_102499561 | 3300028793 | Soil | CKVVESSALRMSDGLKTMILSNRFWRSVTWSVRLDMAVGIAIAVALLLWLMWH |
Ga0307277_1000007322 | 3300028881 | Soil | MSDGAKTMILSNRFWRSVTWLVRLDMAVGIAIAVALLLWLMWH |
Ga0318516_101408532 | 3300031543 | Soil | MTLSHRFWRSITVLVRLDMAAGIAIAAGLVFWLMWH |
Ga0318516_101715382 | 3300031543 | Soil | MSRSDRFWRSVTLLVRLDMAAGIAIAAGLLLVLVWH |
Ga0318534_101007242 | 3300031544 | Soil | MSRSDRFWRGVTLLVRLDMAAGIAIAAGLLLVLVWH |
Ga0318528_104523891 | 3300031561 | Soil | RNGARRMSRSDRFWRSVTLLVRLDMAAGIAIAAGLLLVLVWH |
Ga0318493_102923963 | 3300031723 | Soil | MSRSDRFWRSVTLLVRLDMAACIAIAAGLLLVLVW |
Ga0318537_101701302 | 3300031763 | Soil | RDGARTMTLSHRFWRSITVLVRLDMAAGIAIAAGLVFWLMWH |
Ga0318521_108279141 | 3300031770 | Soil | TLSHRFWRSITVLVRLDMAAGIAIAAGLVFWLMWH |
Ga0318557_103131812 | 3300031795 | Soil | ARTMTLSHRFWRSITVLVRLDMAAGIAIAAGLVFWLMWH |
Ga0307473_104958182 | 3300031820 | Hardwood Forest Soil | MSDGLKTMILSNRFWRSVTWLVRLDMAVGIAIAVALLLWLM |
Ga0318567_101803741 | 3300031821 | Soil | RMSRSDRFWRGVTLLVRLDMAAGIAIAAGLLLVLVWH |
Ga0307478_103624942 | 3300031823 | Hardwood Forest Soil | MTVSRHFWRGLTFLARADMAASVAVAAAPLLWLTWHS |
Ga0318520_102775621 | 3300031897 | Soil | SRSDRFWRGVTLLVRLDMAAGIAIAAGLLLVLVWH |
Ga0306921_101520661 | 3300031912 | Soil | TMTLSHRFWRSITVLVRLDMAAGIAIAAGLVFWLMWH |
Ga0306921_120852752 | 3300031912 | Soil | MTLSDRFWRSVILLVRLDMAAGIAITAGPVFWLMWH |
Ga0318545_103371691 | 3300032042 | Soil | RTMTLSHRFWRSITVLVRLDMAAGIAIAAGLVFWLMWH |
Ga0335080_102324582 | 3300032828 | Soil | MRVTSRFWRSVTLLVRLDIAASIALAAALFLFSTWH |
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