Metagenome / Metatranscriptome Family F104686

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F104686
Family Type	Metagenome / Metatranscriptome
Number of Sequences	100
Average Sequence Length	88 residues
Representative Sequence	MAHIILFTAANQQTGEPRKASALGHRPAQWCQDNLKLEPDPIRLGTEIKLRSSQLVFVKVDQEEGSPLQPGLYPSDRTPTEVRELLSEL
Number of Associated Samples	49
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	84.00 %
% of genes near scaffold ends (potentially truncated)	28.00 %
% of genes from short scaffolds (< 2000 bps)	80.00 %
Associated GOLD sequencing projects	44
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (62.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (47.000 % of family members)
Environment Ontology (ENVO)	Unclassified (71.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (79.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 15.38% β-sheet: 18.80% Coil/Unstructured: 65.81%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF04392	ABC_sub_bind	3.00
PF01546	Peptidase_M20	3.00
PF04679	DNA_ligase_A_C	2.00
PF13180	PDZ_2	1.00
PF12974	Phosphonate-bd	1.00
PF13676	TIR_2	1.00
PF07690	MFS_1	1.00
PF00860	Xan_ur_permease	1.00
PF04909	Amidohydro_2	1.00
PF05875	Ceramidase	1.00
PF06078	DUF937	1.00
PF08239	SH3_3	1.00
PF03352	Adenine_glyco	1.00
PF00872	Transposase_mut	1.00
PF07687	M20_dimer	1.00
PF00378	ECH_1	1.00
PF02518	HATPase_c	1.00
PF00717	Peptidase_S24	1.00

COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	3.00
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	2.00
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	1.00
COG3753	Uncharacterized conserved protein YidB, DUF937 family	Function unknown [S]	1.00
COG2818	3-methyladenine DNA glycosylase Tag	Replication, recombination and repair [L]	1.00

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.00 %
All Organisms	root	All Organisms	38.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.00 %
cellular organisms	root	All Organisms → cellular organisms	38.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.00 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	38.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	13.00 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.00 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.00 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	3.00 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.00 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.00 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.00 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.00 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3.00 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	2.00 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	2.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.00 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.00 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	3.00 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	2.00 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.00 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.00 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	1.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.00 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.00 %
Methylomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas	2.00 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.00 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.00 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	1.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.00 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.00 %
unclassified Methylomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas	2.00 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.00 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.00 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	1.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.00 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.00 %
Methylomonas sp. LL1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas → Methylomonas sp. LL1	2.00 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.00 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.00 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	1.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17325089	Not Available	1557	Open in IMG/M
2228664022\|INPgaii200_c1090173	Not Available	588	Open in IMG/M
2228664022\|INPgaii200_c1090405	Not Available	991	Open in IMG/M
2228664022\|INPgaii200_c1169969	All Organisms → cellular organisms → Bacteria	970	Open in IMG/M
2228664022\|INPgaii200_c1170639	Not Available	1609	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105462468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1451	Open in IMG/M
3300000579\|AP72_2010_repI_A01DRAFT_1058788	Not Available	564	Open in IMG/M
3300000580\|AF_2010_repII_A01DRAFT_1017391	Not Available	1150	Open in IMG/M
3300000580\|AF_2010_repII_A01DRAFT_1024541	Not Available	950	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10059700	Not Available	978	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1003447	All Organisms → cellular organisms → Bacteria	2974	Open in IMG/M
3300000789\|JGI1027J11758_13037123	All Organisms → cellular organisms → Bacteria	3355	Open in IMG/M
3300000789\|JGI1027J11758_13047480	Not Available	640	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10035901	Not Available	1148	Open in IMG/M
3300000837\|AP72_2010_repI_A100DRAFT_1024930	Not Available	839	Open in IMG/M
3300000837\|AP72_2010_repI_A100DRAFT_1050599	Not Available	586	Open in IMG/M
3300000893\|AP72_2010_repI_A001DRAFT_1045010	Not Available	690	Open in IMG/M
3300000955\|JGI1027J12803_102428092	All Organisms → cellular organisms → Bacteria	1272	Open in IMG/M
3300000955\|JGI1027J12803_104105311	Not Available	1560	Open in IMG/M
3300004267\|Ga0066396_10001002	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2373	Open in IMG/M
3300004267\|Ga0066396_10005888	Not Available	1335	Open in IMG/M
3300005332\|Ga0066388_103113184	Not Available	848	Open in IMG/M
3300005332\|Ga0066388_104003774	Not Available	751	Open in IMG/M
3300005332\|Ga0066388_105440615	Not Available	645	Open in IMG/M
3300005332\|Ga0066388_106733225	Not Available	579	Open in IMG/M
3300005363\|Ga0008090_15093985	Not Available	704	Open in IMG/M
3300005445\|Ga0070708_100198773	All Organisms → cellular organisms → Bacteria	1876	Open in IMG/M
3300005467\|Ga0070706_100316571	All Organisms → cellular organisms → Bacteria	1455	Open in IMG/M
3300005518\|Ga0070699_101391167	Not Available	644	Open in IMG/M
3300005536\|Ga0070697_100291523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	1401	Open in IMG/M
3300005536\|Ga0070697_101294031	Not Available	650	Open in IMG/M
3300005764\|Ga0066903_100216266	All Organisms → cellular organisms → Bacteria → Proteobacteria	2896	Open in IMG/M
3300005764\|Ga0066903_106953854	Not Available	587	Open in IMG/M
3300006806\|Ga0079220_11670341	Not Available	555	Open in IMG/M
3300006852\|Ga0075433_10056772	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3421	Open in IMG/M
3300006852\|Ga0075433_10523090	All Organisms → cellular organisms → Bacteria	1044	Open in IMG/M
3300006852\|Ga0075433_11541269	Not Available	574	Open in IMG/M
3300006852\|Ga0075433_11871378	Not Available	515	Open in IMG/M
3300006854\|Ga0075425_100556552	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1320	Open in IMG/M
3300006914\|Ga0075436_100726942	Not Available	736	Open in IMG/M
3300009089\|Ga0099828_11878272	Not Available	525	Open in IMG/M
3300009162\|Ga0075423_10226096	Not Available	1961	Open in IMG/M
3300009162\|Ga0075423_10351190	Not Available	1546	Open in IMG/M
3300009792\|Ga0126374_10009841	All Organisms → cellular organisms → Bacteria	3703	Open in IMG/M
3300009792\|Ga0126374_10041326	Not Available	2263	Open in IMG/M
3300009792\|Ga0126374_11860062	Not Available	505	Open in IMG/M
3300010043\|Ga0126380_10028329	All Organisms → cellular organisms → Bacteria → Proteobacteria	2797	Open in IMG/M
3300010046\|Ga0126384_10172733	Not Available	1685	Open in IMG/M
3300010046\|Ga0126384_12320572	Not Available	518	Open in IMG/M
3300010048\|Ga0126373_10794914	Not Available	1008	Open in IMG/M
3300010048\|Ga0126373_10801228	Not Available	1004	Open in IMG/M
3300010358\|Ga0126370_10006224	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	6059	Open in IMG/M
3300010358\|Ga0126370_10160779	Not Available	1650	Open in IMG/M
3300010358\|Ga0126370_10213543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas → Methylomonas sp. LL1	1468	Open in IMG/M
3300010358\|Ga0126370_10439035	All Organisms → cellular organisms → Bacteria	1085	Open in IMG/M
3300010358\|Ga0126370_10637590	Not Available	926	Open in IMG/M
3300010358\|Ga0126370_10658439	All Organisms → cellular organisms → Bacteria	913	Open in IMG/M
3300010358\|Ga0126370_11078096	Not Available	739	Open in IMG/M
3300010358\|Ga0126370_12162383	Not Available	548	Open in IMG/M
3300010359\|Ga0126376_10185267	All Organisms → cellular organisms → Bacteria	1709	Open in IMG/M
3300010360\|Ga0126372_10008525	All Organisms → cellular organisms → Bacteria → Proteobacteria	5277	Open in IMG/M
3300010360\|Ga0126372_10650891	Not Available	1020	Open in IMG/M
3300010360\|Ga0126372_10768120	All Organisms → cellular organisms → Bacteria	950	Open in IMG/M
3300010361\|Ga0126378_11180520	All Organisms → cellular organisms → Bacteria → Proteobacteria	864	Open in IMG/M
3300010361\|Ga0126378_12244295	Not Available	623	Open in IMG/M
3300010361\|Ga0126378_12946235	Not Available	543	Open in IMG/M
3300010361\|Ga0126378_12973208	Not Available	540	Open in IMG/M
3300010362\|Ga0126377_10008998	All Organisms → cellular organisms → Bacteria	7677	Open in IMG/M
3300010362\|Ga0126377_10385755	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1408	Open in IMG/M
3300010362\|Ga0126377_10425746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas → Methylomonas sp. LL1	1345	Open in IMG/M
3300010366\|Ga0126379_10103359	All Organisms → cellular organisms → Bacteria	2541	Open in IMG/M
3300010366\|Ga0126379_10132021	All Organisms → cellular organisms → Bacteria	2291	Open in IMG/M
3300010376\|Ga0126381_100182474	All Organisms → cellular organisms → Bacteria	2789	Open in IMG/M
3300010376\|Ga0126381_101639899	Not Available	929	Open in IMG/M
3300010376\|Ga0126381_102667623	Not Available	714	Open in IMG/M
3300010376\|Ga0126381_103544421	Not Available	612	Open in IMG/M
3300010398\|Ga0126383_10023285	All Organisms → cellular organisms → Bacteria → Proteobacteria	4791	Open in IMG/M
3300012948\|Ga0126375_10030885	All Organisms → cellular organisms → Bacteria → Proteobacteria	2652	Open in IMG/M
3300012948\|Ga0126375_10037795	Not Available	2464	Open in IMG/M
3300012948\|Ga0126375_10084391	Not Available	1829	Open in IMG/M
3300012948\|Ga0126375_10934897	Not Available	700	Open in IMG/M
3300012948\|Ga0126375_12000438	Not Available	512	Open in IMG/M
3300012971\|Ga0126369_11071592	Not Available	895	Open in IMG/M
3300012971\|Ga0126369_11332198	Not Available	808	Open in IMG/M
3300012971\|Ga0126369_11406418	Not Available	788	Open in IMG/M
3300012971\|Ga0126369_11467259	Not Available	772	Open in IMG/M
3300012971\|Ga0126369_11680029	Not Available	724	Open in IMG/M
3300021178\|Ga0210408_10213056	All Organisms → cellular organisms → Bacteria	1537	Open in IMG/M
3300021560\|Ga0126371_10103975	All Organisms → cellular organisms → Bacteria	2835	Open in IMG/M
3300021560\|Ga0126371_10534914	Not Available	1321	Open in IMG/M
3300021560\|Ga0126371_13607218	Not Available	522	Open in IMG/M
3300025922\|Ga0207646_10940891	Not Available	765	Open in IMG/M
3300025939\|Ga0207665_10058560	All Organisms → cellular organisms → Bacteria	2605	Open in IMG/M
3300027527\|Ga0209684_1037349	Not Available	744	Open in IMG/M
3300027646\|Ga0209466_1136388	Not Available	500	Open in IMG/M
3300031753\|Ga0307477_10771171	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300031962\|Ga0307479_10204371	All Organisms → cellular organisms → Bacteria	1945	Open in IMG/M
3300031962\|Ga0307479_10218096	All Organisms → cellular organisms → Bacteria	1881	Open in IMG/M
3300031962\|Ga0307479_11675308	Not Available	590	Open in IMG/M
3300032783\|Ga0335079_10099641	All Organisms → cellular organisms → Bacteria	3294	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.00%
Host-Associated	Host-Associated	8.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.00%
Plants	Host-Associated → Plants	8.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	74.00%
Loam	Environmental → Terrestrial → Soil → Loam	17.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.00%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	48.00%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.00%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.00%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.00%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.00%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	47.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	10.00%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	9.00%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.00%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.00%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.00%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.00%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	1.00%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000579	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01	Environmental	Open in IMG/M
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000837	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100	Environmental	Open in IMG/M
3300000893	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027527	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_02214990	2088090014	Soil	MAQIILIAPGDQQRGELPKLSTLGYRPAQWCHDNLKLYPEPIPLGKRIELTSSQHVFVRADQEEESSLQPGLYPSGRTPTEVRELLSEL
INPgaii200_10901731	2228664022	Soil	VLFTAANQQTGEPRKVSALGYRPAQWCQDNLKLEPDPIQLGTEIKLRNSQHVFVKVDQEEESPLEPGLYPSDRTPTEVRELLSEL
INPgaii200_10904051	2228664022	Soil	MAHIILFTVANQQTGEPRKASALGHRPAQWCQDNLKLEPDPIRLGTEIKLRSSQLVFVKVDQEEGSPLQPGLYPSDRTTAEVKELLRDG
INPgaii200_11699692	2228664022	Soil	MAQIILITAANHQTGEDQRARLLGFRPAEWCQDNLKLDPDPIALGTRIELTRSQHVLVKVDHEEGSLAPGLYPSDLIPTEVRELLRDR
INPgaii200_11706392	2228664022	Soil	MAQIVLITAPNQQTGEPERLSTLGDRPAQWCIDKLKLEPDPIPLGTRIELTSSQHVFVTVDQDEKGPLKPGLYPSDLIPTEVRELLRDL
INPhiseqgaiiFebDRAFT_1054624683	3300000364	Soil	MAQIILLIAPNQQTGEPKRASALGNRPARWCQANLKLESSPIQVGTRIEVVNNQHVFVKVDEDEEAQLTPGLYSSDRTPSEVKQLLRVLRDR*
AP72_2010_repI_A01DRAFT_10587881	3300000579	Forest Soil	TAANQQTGEPRKASALGYRPAQWCHDNLKLEPDPIRLGTEIKLRNRQHVFVKVDQEEESPLQPGLYPSDRTPTEVRELLSGL*
AF_2010_repII_A01DRAFT_10173913	3300000580	Forest Soil	MAHIVLFTAANQQTGEPRKASALGYRPAQWCHDNLKLEPDPIRLGTEIKLRNRQHVFVKVDQEEESPLQPGLYPSDRTPTEVRELLSGL*
AF_2010_repII_A01DRAFT_10245411	3300000580	Forest Soil	MAQIILITAANQQTGEPKRASALGHRPAQWCQENLKLVPDPIALGTRIEVKSSQHVFVKVDQEEGSPLQPGLYQSDRTTAEVRELLRDD*
AF_2010_repII_A1DRAFT_100597001	3300000597	Forest Soil	VAHIVLFTAANQQTGEPRKVSALGYRPAQWCQDNLKLEPDPIRLGTEIKLRNTQHVFVKVDQEEESPLQPGLYTSDRTPTEVRELLRDL*
AF_2010_repII_A100DRAFT_10034471	3300000655	Forest Soil	MAXXXLFTAANQQTGEXRKASALGXRPAQWCXDXLKLEPXPIXLGTEIKLRXXQHVFVKVDQEEESPLQPGLYPSDRTPTEVRELLSGL*
JGI1027J11758_130371231	3300000789	Soil	MAQIILITAANHQTGEDQRARLLGFRPAEWCQDNLKLDPDPIALGTRIELTRSQHVLVKVDHEEGSLAPGLYPSDLIPTEVR
JGI1027J11758_130474801	3300000789	Soil	MAQIILIAPGDQQRGELPKLSTLGYRPAQWCHDNLKLYPEPIPLGKRIELTSSQHVFVRADQEEESSLQPGLYPSGRTPTEVR
AF_2010_repII_A001DRAFT_100359012	3300000793	Forest Soil	MAHIILFTAANQQTGEPRKASALGYRPAQWCHDNLKLEPDPIRLGTEIKLRNRQHVFVKVDQEEESPLQPGLYPSDRTPTEVRELLSGL*
AP72_2010_repI_A100DRAFT_10249301	3300000837	Forest Soil	MARIILFTAANQQTGEPRKVSALGHRPAQWCQDNLKLEPDPIQLGTNIQLRSNQHVFVKVDQEEESPLQPGLYPSDRTPTEVTELLRDL*
AP72_2010_repI_A100DRAFT_10505992	3300000837	Forest Soil	MAHIILFTAVNQQTGEPERASALGQKPAQWCSEKLKLEPDPIRLGTEIKLRSSQYVFVKVDSEEESPLKPGLYQSDRTPTEVRELLSEL*
AP72_2010_repI_A001DRAFT_10450101	3300000893	Forest Soil	MAQIILITAAKQQTGEPKRASALGHRPAQWCQENLKLVPDPIALGTRIEVKSSQHVFVKVDQEEGSPLQPGLYQSDRTTAEVRELLRDD*
JGI1027J12803_1024280921	3300000955	Soil	MAQIVLITAPNQQTGEPERLSTLGDRPAQWCIDKLKLEPDPIPLGTRIELTSSQHVFVTVDQDEKGPLKPGLYPSDLIPTEVRELLRDL*
JGI1027J12803_1041053112	3300000955	Soil	MAHIILFTAANQQTGEPRKASALGHRPAQWCQDNLKLEPDPIRLGTEIKLRSSQLVFVKVDQEEGSPLQPGLYPSDRTPTEVRELLSEL*
Ga0066396_100010021	3300004267	Tropical Forest Soil	VAHIVLFTAANQQTGEPRKVSALGYRPAQWCQDNLKLEPDPIQLGTEIKLRNTQHVFVKVDQEEESPLQPGLYPSDSTPIEVRELLRDR*
Ga0066396_100058883	3300004267	Tropical Forest Soil	MAQIVLISAANGEPQKISMLGQRPPQWCQENLKLDPDPIALGTRIELTRSQQVFVKVDQGEKGPLQPGMYPSDRIPAAVRELLREL*
Ga0066388_1031131841	3300005332	Tropical Forest Soil	MAQIILITAANQQTDEPKRASELGHRPAQWCQDNMKLEPDPIRLGTGIKLRSSQNVFVKVDQEEECPLQPGLYPSDRTPTEVRELLRDE*
Ga0066388_1040037741	3300005332	Tropical Forest Soil	MAHIILFTAANQQTGEARKVSALGHRPAQWCQDNLKLEPDPIQLGTEIKLRNGQHVFVKVDKEEESPLQPGLYPSNRTPTEVRELLSDL*
Ga0066388_1054406152	3300005332	Tropical Forest Soil	MAHIILFTAANQQTGEPRKVSALGYRPAQWCQDNLKLEPDPIRLGTEIKLRSNQHVFVKVDQEEGSPLQPGLYPSDRTPTEVRELLS
Ga0066388_1067332251	3300005332	Tropical Forest Soil	MAQIILITAANQQTGEDQRASLLGYRPAQWCEEKLKLDPDPIPLGTRIELTRSQHVFVQVDQDEKGPLQPGLYPSDRIPTEVRELLRER*
Ga0008090_150939852	3300005363	Tropical Rainforest Soil	MAQIILITAANQQTGESKRASALGHRPAQWCQENLKLVPDPIALGTRIEVKSSQHVFVKVDQEEGSPLQPGLYQSDRTTAEVRELLRDD*
Ga0070708_1001987732	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MAHIILFTVANQQTGEPRKASALGYRPAQWCQDNLKLEPDPIRLGTEIKLRSNQHVFVKVDQEEGSPIQPGLYPSDRTPTEVKELLIDH*
Ga0070706_1003165714	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MAHIILFTVANQQTGEPRKASALGYRPAQWCQDNLKLEPDPIRLGTEIKLRSNQHVFVKVDQEEGSPLQPGLYPSDRTPTEVKELLIDH*
Ga0070699_1013911672	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MAHIILFTVANQQTGEPRKASALGHRPAQWCQDNLKLEPDPVRLGAEIKLRSSQLVFVKVDQEEGSPLQPGLYPSDRTPTEVRDLLKDR*
Ga0070697_1002915232	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MAHIILFTVANQQTGEPRKASALGYRPAQWCQDNLKLEPDPIRLGTEIKLRSNQHVFVKVDQEEGSPIQPGLYPSDRTTAEVKELLRDG*
Ga0070697_1012940312	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MAQIILITAANEQTGEAQQAHLLGFRPGQWCQDNLKLDPDPIPLGTRIELTLSQHVFIKVDQEEGSLKPGLYPSDLIPTEVRELLRER*
Ga0066903_1002162662	3300005764	Tropical Forest Soil	MAHIILFTAANQQTGEPRKVSALGYRPAQWCQDNLKLEPDPIRLGTEIKLRSSQHVFVKVDQEEGSPLQPGLYPSDRTPTEVSELLR*
Ga0066903_1069538541	3300005764	Tropical Forest Soil	MAQIILITAANQQTDEPKRASELGHRPAQWCQDNMKLEPDPIRLGTGIKLRSSQNVFVKVDQEEECPLQPGLYPSDRTPTEVKELLRDR*
Ga0079220_116703411	3300006806	Agricultural Soil	MAHIILFTAANQQTGEPRKASALGHRPARWCQDNLKLEPDPIRLGTEIKLRSSQHVFVKVDQEEGSPIRPGLYPSDRTPTEVKELLIDH*
Ga0075433_100567722	3300006852	Populus Rhizosphere	MAQIILIAPGDQQRGELPKLSTLGYRPAQWCHDNLKLYPEPIPLGKRIELTSSQHVFVRADQEEESSLQPGLYPSGRTPTEVRELLSEL*
Ga0075433_105230901	3300006852	Populus Rhizosphere	MAQIILITAANHQTGEDQRARLLGFRPAEWCQDNLKLDPDPIALGTRIELTRSQHVLVKVDHEEGSLAPGLYPSDLIPTEVRELLRDR*
Ga0075433_115412692	3300006852	Populus Rhizosphere	MAHIILFTVANQQTGEPRKASALGHRPAQWCQDNLKLEPDPIRLGTEIKLRSSQLVFVKVDQEEGSPLQPGLYPSDRTTAEVKELLRDG*
Ga0075433_118713781	3300006852	Populus Rhizosphere	MAQIILFTDTNQQTGEPKKLSALGYRPAQWCQENLKLESDPIQLGTRVELANNQRVFVKVDQEEGSPLKPGVYSSDQSLND
Ga0075425_1005565523	3300006854	Populus Rhizosphere	MAQIILFTDTNQQTGEPKKLSALGYRPAQWCQENLKLESDPIQLGTRVELANNQRVFVKVDQEEGSPLKPGVYSSDQNPTAVIELLRDA*
Ga0075436_1007269421	3300006914	Populus Rhizosphere	GFLMAQIILFTDTNQQTGEPKKLSALGYRPAQWCQENLKLESDPIQLGTRVELANNQRVFVKVDQEEGSPLKPGVYSSDQNPTAVIELLRDA*
Ga0099828_118782721	3300009089	Vadose Zone Soil	MAQIILITAADPANTGEPQRLSTLGDRPAQWCKDKLKLEPAPIPLGTRIELTSSQHVFVTVDQDEKGPLKPGLYPSDLIPTEVRELLRDR*
Ga0075423_102260961	3300009162	Populus Rhizosphere	MAHIILFTAANQQTGEPRKTSALGHRPEQWCQDNLKLEPDPIRLGTEIKLRSSQLVFVKVDQEEGSPLQPGLYPSDRTTAEVKELLRDG*
Ga0075423_103511903	3300009162	Populus Rhizosphere	MAHIILFTVANQQTGEPRKVSALGHRPAQWCQDNLKLEPDPIRLGTEIKLRSSQLVFVKVDQEEGSPLQPG
Ga0126374_100098414	3300009792	Tropical Forest Soil	MAQIVLISAANGEPQKISMLGQRPPQWCQENLKLDPDPIALGTRIELTRSQQVFVKVDQGEKGPLQPGLYPSDRIPAAVRELLREL*
Ga0126374_100413262	3300009792	Tropical Forest Soil	MAHIILFTTANQQTGEARKVSALGHRPAQWCQDNLKLEPDPIQLGTEIKLRNSQHVFVKVDQEEESPLQPGLYPSDSTPIEVRELLRDR*
Ga0126374_118600621	3300009792	Tropical Forest Soil	MAHIILFTAANHQTGEPRKASALGHKPAHWCQEKLKLEPEPIALGTRIELKSSQYVFVKVDSEEESPLQPGLYQSDRTPTEVRELLSEL*
Ga0126380_100283294	3300010043	Tropical Forest Soil	FMAHIILFTTANQQTGEARKVSALGHRPAQWCQDNLKLEPDPIQLGTEIKLRNTQHVFVKVDQEEESPLQPGLYPSDSTPIEVRELLRDR*
Ga0126384_101727331	3300010046	Tropical Forest Soil	MAHIILFTAVNQQTGEPERASALGQKPAQWCSEKLKLEPDPIRLGTEIKLRSSQYVFVKVDSEEESPLQPGLYQSDRTPTEVRELLSE
Ga0126384_123205722	3300010046	Tropical Forest Soil	FMAHIILFTTANQQTGEARKVSALGHRPAQWCQDNLKLEPDPIQLGTEIKLRNGQHVFVKVDKEEESPLQPGLYPSNRTPTEVRELLSDL*
Ga0126373_107949141	3300010048	Tropical Forest Soil	MAHIILFTTANQQTGEARKVSALGHRPAQWCQDNLKLEPDPIQLGTEIKLRNSQHVFVKVDQEEESPLQPGLYPSDRTPTEVTELLRD
Ga0126373_108012283	3300010048	Tropical Forest Soil	VAHIILFTAANQQTGEPRNASALGYRPAQWCQDNLKLEPDPIRLGTEIKLRSNQHVFVKVDQEEESPLQPGLYPSDRTPTEVTELLR
Ga0126370_100062243	3300010358	Tropical Forest Soil	MAHIILFTTANQQTGEARKVSALGHRPAQWCQDNLKLEPDPIQLGTEIKLRNSQHVFVKVDQEEESPLQPGLYPSDRTPTEVTELLRDL*
Ga0126370_101607791	3300010358	Tropical Forest Soil	MAHIILFTSANQQTGEPRKASALGYRPAQWCQDNLKLEPDPIRLGTEVKLRSNQHVFVKVDQEEGSPLQPGLYPSDRTPTEVNELLRDH*
Ga0126370_102135432	3300010358	Tropical Forest Soil	VAHIILFTAANQQTGEPRNASALGYRPAQWCQDNLKLEPDPIRLGTEIKLRSSQHVFVKVDQEEECPLQPGLYPSDRTPTEVSELLR*
Ga0126370_104390352	3300010358	Tropical Forest Soil	LPYFGAKLLLLEEAFMAQIILITAANQQTDEPKRASELGHRPAQWCQDNMKLEPDPIRLGTGIKLRSSQNVFVKVDQEEECPLQPGLYPSDRTPTEVRELLRDE*
Ga0126370_106375901	3300010358	Tropical Forest Soil	VAHIILFTAANHQTGEPRKASALGHKPAHWCQEKLKLEPEPIALGTRIELKSSQYVFVKVDSEEGSPLQPGLYPSDRTPTEVTELLRDR*
Ga0126370_106584393	3300010358	Tropical Forest Soil	QQTGEDQRAHLLGVKPAEWCQDNLKLDPDPIPLGTRIELTRSQHVFVKVDHEEGSLAPGLYPSDRIPTEVRELLRER*
Ga0126370_110780962	3300010358	Tropical Forest Soil	LTGEPARRLPSSKLLLFEEAFMAHIILFTAANQQTGEARKVSALGHRPAQWCQDNLKLEPDPIQLGTEIKLRNGQHVFVKVDKEEESPLQPGLYPSNRTPTEVRELLSDL*
Ga0126370_121623831	3300010358	Tropical Forest Soil	MAHIILITVASQQTGELKTASALGHRPAQWCQDNLKLEPDPIQLGTEIELINGQHVFVKVDQEEGSPLQPGLYQSDRTTAEVRELLSD*
Ga0126376_101852673	3300010359	Tropical Forest Soil	VAHIVLFTAANQQTGEPRKVSALGYRPAQWCQDNLKLEPDPIQLGTEIKLRNTQHVFVKVDQEEESPLQPGLYPSDRTPTEVRELLRDL*
Ga0126372_100085259	3300010360	Tropical Forest Soil	MAHIILFTTANQQTGEARKVSALGHRPAQWCQDNLKLEPDPIQLGTEIKLRNSQHVFVKVDQEEESPLQPGLYPSDRTPTEVTELLRDR*
Ga0126372_106508911	3300010360	Tropical Forest Soil	LPYFGAKLLLLEEAFMAQIILITAANQQTDEPKRASELGHRPAQWCQDNMKLEPDPIRLGTGIKLRSSQNVFVKVDQEEECPLPPGLYPSDRTPTEVRELLRDE*
Ga0126372_107681201	3300010360	Tropical Forest Soil	MVQIILITAENQQTGEDQRAHLLGVKPAEWCQDNLKLDPDPIPLGTRIELTRSQHVFVKVDHEEGSLAPGLYPSDRIP
Ga0126378_111805201	3300010361	Tropical Forest Soil	TAVNQQTGEPERASALGQKPAQWCSEKLKLEPDPIRLGTEIKLRSSQHVFVKVDQEEGSPLQPGLYPSDRTPTEVSELLR*
Ga0126378_122442952	3300010361	Tropical Forest Soil	VAHIVLFTAANQQTGEARKVSALGHRPAQWCQDNLKLEPDPIQLGTEIKLRNTQHVFVKVDQEEESPLQPGLYPSDSTPIEVRELLRDL*
Ga0126378_129462351	3300010361	Tropical Forest Soil	LTGEPARRLPPLAQNYFFLRRLFMAHIILFTAANQQTGEARKVSALGHRPAQWCQDNLKLEPDPIQLGTEIKLRNGQHVFVKVDKEEESPLQPGLYPSNRTPTEVRELLSDL*
Ga0126378_129732081	3300010361	Tropical Forest Soil	RLSMAHIILFTSANQQTGEPRKVSALGHRPAQWCQDNLKLEPDPIRLGTEMKLRSNQHVFVKVDQEEGSPLQPGLYPSDRTPTEVRELLSEL*
Ga0126377_100089982	3300010362	Tropical Forest Soil	MAHIILFTAANQQTGEARKVSALGHRPAQWCQDNLKLEPDPIQLGTEIKLRNTQHVFVKVDQEEESPLQPGLYPSDRTPTEVRELLRDL*
Ga0126377_103857554	3300010362	Tropical Forest Soil	MAQIVLISAANGEPQKISMLGQRPPQWCQENLKLDPDPIALGTRIELTRSQQVFVKVDQGEKGPLQPGMYLSD
Ga0126377_104257463	3300010362	Tropical Forest Soil	VAHIVLFTAANQQTGEPRKVSALGYGPAQWCQDNLKLEPDPIRLGTEIKLRSSQHVFVKVDQEEGSPLQPGLYPSDRTPTEVSELLR*
Ga0126379_101033591	3300010366	Tropical Forest Soil	MAHIILFTAANHQTGEPRKASALGHKPAQWCQEKLKLEPEPIALGTRIELKSSQYVFVKVDSEEESPLQPGLYQSDRTPTEVRELLSEL*
Ga0126379_101320212	3300010366	Tropical Forest Soil	MVQIILITAENQQTGEDQRAHLLGVKPAEWCQDNLKLDPDPIPLGTRIELTRSQHVFVKVDHEEGSLAPGLYPSDRIPTEVRELLRER*
Ga0126381_1001824742	3300010376	Tropical Forest Soil	MVQIILITAENQQTGEDQRAHLLGVKPAEWCQDNLKLDPDPIPLGTRIELTRSQHVFVQVDQDEKGPLQPGLYPSDRIPTEVRELLRER*
Ga0126381_1016398993	3300010376	Tropical Forest Soil	MAHIILFTAANQQTGEPRKASALGHKPAQWCQEKLKLEPEPIALGTRIELKSSQYVFVKVDSEEESPLQPGLYQSDRTPTEVRELLSEL*
Ga0126381_1026676231	3300010376	Tropical Forest Soil	ILITVASQQTGELKTASALGHRPAQWCQDNLKLEPDPIQLGTEIELINGQHVFVKVDQEEGSPLQPGLYQSDRTTAEVRELLSD*
Ga0126381_1035444212	3300010376	Tropical Forest Soil	MEDFLMAQIILIIAANQQTGEDQRASLLGYRPAQWCEEKLKLDPDPIPLGTRIELTRSQHVFVQIDQDEKGPLQPGLYPSERIPTEVRELLRDL*
Ga0126383_100232851	3300010398	Tropical Forest Soil	MAHIILFTTANQQTGEARKVSALGHRPAQWCQDNLKLEPDPIQLGTEIKLRNSQHVFVKVDQEEESPLQPG
Ga0126375_100308852	3300012948	Tropical Forest Soil	VAHIVLFTAANQQTGEPRKVSALGHRPAQWCQDNLKLEPDPIRLGTEIKLRSSQHVFVKVDQEEGSPLQPGLYPSDRTPTEVSELLR*
Ga0126375_100377951	3300012948	Tropical Forest Soil	MAHIILFTAVNQQTGEPERASALGQKPAQWCSEKLKLEPDPIRLGTEIKLRSSQYVFVKVDSEEESPLQPGLYQSDRTPTEVRELLSEL*
Ga0126375_100843914	3300012948	Tropical Forest Soil	MAHIILFTTANQQTGEARKVSALGHRPAQWCQDNLKLEPDPIQLGTEIKLRNSQHVFVKVDQEEESPLQPGLYPSDRTPTEVRELLR
Ga0126375_109348971	3300012948	Tropical Forest Soil	VAHIILFTAANHQTGEPRKASALGHKPAHWCQEKLKLEPEPIALGTRIELKSSQYVFVKVDSEEGSPLQPGLYPSDRTPTEVRELLSEL*
Ga0126375_120004382	3300012948	Tropical Forest Soil	MAQIILITPGDQQRGESPKLSTLGYRPAQWCHENLKLYPDPIPLGKRIELTSSQHVFVKADKEEESPLQPGLYPSDRTPTEVRELLRD*
Ga0126369_110715922	3300012971	Tropical Forest Soil	MAHIILFTSANQQTGEPRKVSALGHRPAQWCQDNLKLEPDPIRLGTEMKLRSNQHVFVKVDQEEGSPLQPGLYPSDRTPTEVRELLSEL*
Ga0126369_113321982	3300012971	Tropical Forest Soil	MAHIILFTAANQQTGEPRKASALGHKPAQWCQEKLKLEPEPIALGTRIELKSSQYVFVKVDSEEESPLQPGLYQSDRTPIEVRELLSEL*
Ga0126369_114064181	3300012971	Tropical Forest Soil	VAHIVLFTAANQQTGEPRKVSALGYRPAQWCQDNLKLEPDPIQLGTEIKLRNTQHVFVKVDQEEESPLQPGLYPSDRT
Ga0126369_114672592	3300012971	Tropical Forest Soil	LPYFGAKLLLLEEAFMAQIILITAANQQTDEPKRASELGHRPAQWCQDNMKLEPDPIRLGTGIKLRSIQNVFVKVDQEEECPLPPGLYPSDRTPTEVRELLRDE*
Ga0126369_116800291	3300012971	Tropical Forest Soil	MAQIILITAANQQTGEDQRASLLGYRPAQWCEEKLKLDPDPIPLGTRIELTRSQHVFVQIDQDEKGPLQPGLYPSERIPTEVRELLRDL*
Ga0210408_102130563	3300021178	Soil	MAQIILITAGTERAGEPQRLSTLGARPAQWCMDKLNLEPDPIPLGTRVELTSSQHVFVKIDQDEKGPLKPGLYPSDRTPTVVRELLREL
Ga0126371_101039755	3300021560	Tropical Forest Soil	MAQIVLISAANGEPQKISMLGQRPPQWCQENLKLDPDPIALGTRIELTRSQQVFVKVDQGEKGPLQPGLYPSDRIPAAVRELLREL
Ga0126371_105349141	3300021560	Tropical Forest Soil	MAHIILFTAANQQTGEARKVSALGHRPAQWCQDNLKLEPDPIQLGTEIKLRNTQHVFVKVDQEEESPLQPGLYPSDSTPIEVRELLRDR
Ga0126371_136072181	3300021560	Tropical Forest Soil	MAHIILFTAVNQQTGEPERASALGQKPAQWCSEKLKLEPDPIRLGTEIKLRSSQYVFVKVDSEEESPLQPGLYQSDRTPTEVRELLRDE
Ga0207646_109408911	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MAHIILFTVANQQTGEPRKATALGHRPAQWCQDNLKLEPDPIRLGTEIKLRSSQHVFVKVDQEEGSPIQPGLYPSDRTPTEV
Ga0207665_100585604	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MAHIILFTVANQQTGEPRKATALGYRPAQWCQDNLKLEPDPIRLGTEIKLRSSQHVFVKVDQEEGSPIQPGLYPSDR
Ga0209684_10373492	3300027527	Tropical Forest Soil	VAHIILFTAANHQTGEPRKASALGHKPAHWCQEKLKLEPEPIALGTRIELKSSQYVFVKVDSEEESPLQPGLYQSDRT
Ga0209466_11363881	3300027646	Tropical Forest Soil	MAHIILFTTANQQTGEARKVSALGHRPAQWCQDNLKLEPDPIQLGTEIKLRNSQHVFVKVDQEEESPLQPGLYPSDSTPIEVRELLRDR
Ga0307477_107711712	3300031753	Hardwood Forest Soil	MAHIILFTVANQQTGEPRKASALGYRPAQWCQDNLKLEPDPIRLGTEIKLRSNQHVFVKVDQEEGSPIQPGLY
Ga0307479_102043713	3300031962	Hardwood Forest Soil	MAHIILFTVANQQTGEPRKASALGYRPAQWCQDNLKLEPDPIRLGTEIKLRSNQHVFVKVDQEEGSPIQPGLYPSDRTPTEVKELLRDG
Ga0307479_102180963	3300031962	Hardwood Forest Soil	MAHIILFTVANQQTGEPRKATALGHRPAQWCQDNLKLEPDPIRLGTEIKLRSSQLVFVKVDQEEGSPLQPGLYPSDRTPTEARELLKDR
Ga0307479_116753082	3300031962	Hardwood Forest Soil	MAQIILITAADQQTGEAQRAHLLGFRPAQWCQNNLKLDPDPIPLGTRIELTLSQHVFVKVDQEEDSLAPGLYPSDLIPTEVRELLRER
Ga0335079_100996415	3300032783	Soil	MAQIILITAASQNRDEPKRASELGHRPAQWCHDNMKLEPDPIRLGTGIKLRSNQNVFVKVDQEEASPLQPGLYPSDRTPTEVRELLSGL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F104686

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences