NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F104943

Metagenome / Metatranscriptome Family F104943

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F104943
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 44 residues
Representative Sequence EDGQNVLLELMKEGVRFRSSGVFTKHVMKRLARKIRRNVQEPER
Number of Associated Samples 73
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 10.00 %
% of genes near scaffold ends (potentially truncated) 91.00 %
% of genes from short scaffolds (< 2000 bps) 90.00 %
Associated GOLD sequencing projects 71
AlphaFold2 3D model prediction Yes
3D model pTM-score0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (84.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(39.000 % of family members)
Environment Ontology (ENVO) Unclassified
(37.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(69.000 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 37.50%    β-sheet: 2.78%    Coil/Unstructured: 59.72%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.57
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF02321OEP 14.00
PF13581HATPase_c_2 10.00
PF16576HlyD_D23 8.00
PF13533Biotin_lipoyl_2 7.00
PF03544TonB_C 4.00
PF07992Pyr_redox_2 2.00
PF13481AAA_25 1.00
PF13589HATPase_c_3 1.00
PF03693ParD_antitoxin 1.00
PF01381HTH_3 1.00
PF00582Usp 1.00
PF01695IstB_IS21 1.00
PF07885Ion_trans_2 1.00
PF00296Bac_luciferase 1.00
PF13590DUF4136 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG1538Outer membrane protein TolCCell wall/membrane/envelope biogenesis [M] 28.00
COG0810Periplasmic protein TonB, links inner and outer membranesCell wall/membrane/envelope biogenesis [M] 4.00
COG1484DNA replication protein DnaCReplication, recombination and repair [L] 1.00
COG2141Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)Coenzyme transport and metabolism [H] 1.00
COG3609Transcriptional regulator, contains Arc/MetJ-type RHH (ribbon-helix-helix) DNA-binding domainTranscription [K] 1.00

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms84.00 %
UnclassifiedrootN/A16.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002245|JGIcombinedJ26739_101536183All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium562Open in IMG/M
3300002909|JGI25388J43891_1000456All Organisms → cellular organisms → Bacteria8133Open in IMG/M
3300005171|Ga0066677_10029544All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2613Open in IMG/M
3300005446|Ga0066686_10089405All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1965Open in IMG/M
3300005541|Ga0070733_10748917Not Available656Open in IMG/M
3300005554|Ga0066661_10063073All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2149Open in IMG/M
3300005576|Ga0066708_10215831All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1209Open in IMG/M
3300005586|Ga0066691_10572338All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium673Open in IMG/M
3300005591|Ga0070761_10329336All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae922Open in IMG/M
3300005598|Ga0066706_10623676All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium856Open in IMG/M
3300005610|Ga0070763_10402990All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium769Open in IMG/M
3300005610|Ga0070763_10835176Not Available546Open in IMG/M
3300005921|Ga0070766_10291684All Organisms → cellular organisms → Bacteria1045Open in IMG/M
3300005921|Ga0070766_11076356All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae554Open in IMG/M
3300006755|Ga0079222_10141349All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1351Open in IMG/M
3300007258|Ga0099793_10424722All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium655Open in IMG/M
3300007265|Ga0099794_10712610All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium535Open in IMG/M
3300009012|Ga0066710_101982986All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium865Open in IMG/M
3300009089|Ga0099828_10779636All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium857Open in IMG/M
3300011120|Ga0150983_11684724All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium874Open in IMG/M
3300012199|Ga0137383_10061413All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2698Open in IMG/M
3300012351|Ga0137386_11088478All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium565Open in IMG/M
3300012582|Ga0137358_10591392All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium745Open in IMG/M
3300012685|Ga0137397_11120539All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium572Open in IMG/M
3300012685|Ga0137397_11140034All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium565Open in IMG/M
3300012917|Ga0137395_10065020All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2339Open in IMG/M
3300012917|Ga0137395_10207334All Organisms → cellular organisms → Bacteria1366Open in IMG/M
3300012918|Ga0137396_10442824All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium963Open in IMG/M
3300012923|Ga0137359_10624179All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium944Open in IMG/M
3300012925|Ga0137419_10825336All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium760Open in IMG/M
3300012927|Ga0137416_11325198All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium651Open in IMG/M
3300012930|Ga0137407_11566574All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium627Open in IMG/M
3300012975|Ga0134110_10066510All Organisms → cellular organisms → Bacteria1431Open in IMG/M
3300014501|Ga0182024_11971082All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium647Open in IMG/M
3300015051|Ga0137414_1209063All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium626Open in IMG/M
3300015052|Ga0137411_1048139All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2105Open in IMG/M
3300015053|Ga0137405_1203640All Organisms → cellular organisms → Bacteria819Open in IMG/M
3300018431|Ga0066655_10002469All Organisms → cellular organisms → Bacteria7003Open in IMG/M
3300020579|Ga0210407_10070139All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2631Open in IMG/M
3300020579|Ga0210407_10277929All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1306Open in IMG/M
3300020579|Ga0210407_10395728All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1081Open in IMG/M
3300020581|Ga0210399_10367844All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1200Open in IMG/M
3300020581|Ga0210399_10461878All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1057Open in IMG/M
3300020582|Ga0210395_10155418All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1708Open in IMG/M
3300020582|Ga0210395_10373877All Organisms → cellular organisms → Bacteria1072Open in IMG/M
3300020583|Ga0210401_10542185All Organisms → cellular organisms → Bacteria1026Open in IMG/M
3300021046|Ga0215015_10934893Not Available513Open in IMG/M
3300021088|Ga0210404_10679844All Organisms → cellular organisms → Bacteria587Open in IMG/M
3300021088|Ga0210404_10687304All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium583Open in IMG/M
3300021168|Ga0210406_10709228All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium774Open in IMG/M
3300021171|Ga0210405_10425171All Organisms → cellular organisms → Bacteria1045Open in IMG/M
3300021178|Ga0210408_10315070Not Available1247Open in IMG/M
3300021178|Ga0210408_10476730Not Available993Open in IMG/M
3300021178|Ga0210408_11293975All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium553Open in IMG/M
3300021180|Ga0210396_11099880All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium669Open in IMG/M
3300021181|Ga0210388_10477992Not Available1094Open in IMG/M
3300021181|Ga0210388_11808391All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium503Open in IMG/M
3300021401|Ga0210393_10621596Not Available882Open in IMG/M
3300021403|Ga0210397_10315261All Organisms → cellular organisms → Bacteria → Acidobacteria1152Open in IMG/M
3300021403|Ga0210397_10627363All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium823Open in IMG/M
3300021420|Ga0210394_11570118All Organisms → cellular organisms → Bacteria555Open in IMG/M
3300021420|Ga0210394_11635375All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium541Open in IMG/M
3300021432|Ga0210384_11809557All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium516Open in IMG/M
3300021432|Ga0210384_11843984All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae510Open in IMG/M
3300021432|Ga0210384_11859392All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium508Open in IMG/M
3300021433|Ga0210391_10419249Not Available1051Open in IMG/M
3300021433|Ga0210391_10782900All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium746Open in IMG/M
3300021478|Ga0210402_10774585Not Available884Open in IMG/M
3300021559|Ga0210409_10416344All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1201Open in IMG/M
3300021559|Ga0210409_10570246Not Available999Open in IMG/M
3300021559|Ga0210409_10691548All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium891Open in IMG/M
3300021559|Ga0210409_11100837All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium669Open in IMG/M
3300021559|Ga0210409_11488549All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium553Open in IMG/M
3300021559|Ga0210409_11728553Not Available502Open in IMG/M
3300026329|Ga0209375_1223041All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium672Open in IMG/M
3300026335|Ga0209804_1001925All Organisms → cellular organisms → Bacteria12942Open in IMG/M
3300026356|Ga0257150_1035826All Organisms → cellular organisms → Bacteria719Open in IMG/M
3300026475|Ga0257147_1012850Not Available1125Open in IMG/M
3300027648|Ga0209420_1161404All Organisms → cellular organisms → Bacteria610Open in IMG/M
3300027855|Ga0209693_10338414All Organisms → cellular organisms → Bacteria731Open in IMG/M
3300027889|Ga0209380_10694964Not Available584Open in IMG/M
3300027895|Ga0209624_10438975Not Available870Open in IMG/M
3300028906|Ga0308309_10340977All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum1276Open in IMG/M
3300029636|Ga0222749_10335872All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium788Open in IMG/M
3300029636|Ga0222749_10731090All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium542Open in IMG/M
3300031474|Ga0170818_104987670All Organisms → cellular organisms → Bacteria2002Open in IMG/M
3300031715|Ga0307476_11259948All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae540Open in IMG/M
3300031720|Ga0307469_12324228All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium523Open in IMG/M
3300031744|Ga0306918_10909478All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium685Open in IMG/M
3300031753|Ga0307477_10361358All Organisms → cellular organisms → Bacteria997Open in IMG/M
3300031753|Ga0307477_10453913All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium874Open in IMG/M
3300031754|Ga0307475_10381783All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1132Open in IMG/M
3300031754|Ga0307475_10628314All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium859Open in IMG/M
3300031823|Ga0307478_11697680All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium520Open in IMG/M
3300031912|Ga0306921_12450439Not Available543Open in IMG/M
3300031962|Ga0307479_10414180All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_2_56_111332Open in IMG/M
3300031962|Ga0307479_10680616All Organisms → cellular organisms → Bacteria1008Open in IMG/M
3300032174|Ga0307470_10446756Not Available928Open in IMG/M
3300032180|Ga0307471_100591491All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1268Open in IMG/M
3300032180|Ga0307471_104310057All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium502Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil39.00%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil18.00%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil12.00%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil8.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil7.00%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil4.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil3.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.00%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.00%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.00%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.00%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost1.00%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300002909Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cmEnvironmentalOpen in IMG/M
3300005171Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126EnvironmentalOpen in IMG/M
3300005446Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135EnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005554Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110EnvironmentalOpen in IMG/M
3300005576Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157EnvironmentalOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012975Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015EnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300015051Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015052Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015053Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021046Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depthEnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300026329Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)EnvironmentalOpen in IMG/M
3300026335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)EnvironmentalOpen in IMG/M
3300026356Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-AEnvironmentalOpen in IMG/M
3300026475Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-AEnvironmentalOpen in IMG/M
3300027648Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027855Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)EnvironmentalOpen in IMG/M
3300027889Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)EnvironmentalOpen in IMG/M
3300027895Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031474Fir Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGIcombinedJ26739_10153618313300002245Forest SoilNVLLELMKEKARFRSGVFTKQVLKRLARNIRRNVQEEKK*
JGI25388J43891_100045663300002909Grasslands SoilVIELRSVTCISEDGQNVLLELMKEGVTFRSSGVFRKHVMKQLARKIR*
Ga0066677_1002954413300005171SoilVTCISEDGQNVLLELMKEGVTFRSSGVFRKHVMKQLARKIR*
Ga0066686_1008940543300005446SoilLVIELRNVTCISEDGQNVLLELMKEGVRFRSSGVFTKHVMKQLARKIR*
Ga0070733_1074891723300005541Surface SoilMAVSFVINLEGLTAITKDGENILLELMQEGSSFRSSGVFTKQVLERLACVIRGNVQEAKT
Ga0066661_1006307313300005554SoilMKEGVRFRSSGVFTKHVMKRLAHKIRRNVKEPER*
Ga0066708_1021583133300005576SoilVIELRSVTCISEDGQNVLLELMKEGVTFRSSGVFRKHVMKQL
Ga0066691_1057233843300005586SoilMKEGVRFRSSGMFTKHVMKRLAHNIRGNVKEPGR*
Ga0070761_1032933613300005591SoilEDGENVLLELMKEGASFRSSGVFTKQILKRMARKIRQDV*
Ga0066706_1062367633300005598SoilVIELRSVTCISEDGQNVLLELMKEGVRFRSSGVFRKHVMKQLARKIR*
Ga0070763_1040299033300005610SoilLRNVTCISEDGQNVLLELMKEGVRFRSSGVFTKHVIKQLARKIRRNVQEPER*
Ga0070763_1083517613300005610SoilNVLLELMKEGASFRSSGVFTKHVLKRLACKIRREV*
Ga0070766_1029168413300005921SoilENVLLELMKEGASFRSSGVFTRQVLKRMARKIHRDV*
Ga0070766_1107635623300005921SoilMKAGVRFRSSGVFTKQVLKRLARHIRRNVQEEKT*
Ga0079222_1014134913300006755Agricultural SoilEDGQNVLLELMKEGVKFRSSGVFTKHVIKQLAGKIRRNVQGPKK*
Ga0099793_1042472223300007258Vadose Zone SoilGQNVLLELMKEGVRFRSSGVFTKHVMKQLARKIRRNVQEPKK*
Ga0099794_1071261013300007265Vadose Zone SoilGKNVLLELMKGGVRFRSSGVFTKHVMKRLAHKIRRNVK*
Ga0066710_10198298613300009012Grasslands SoilDGENVVLELMKEGARFRSSGVFTKQVLKRLARKVRSDVEEAKR
Ga0099828_1077963643300009089Vadose Zone SoilIELRNVTCISEDGQNVLLELMKEGVRFRSSGVFRKHVMKQLARKIR*
Ga0150983_1168472443300011120Forest SoilLELMKEGVRFRSSGVFTKHVMKRLAHKIRRNVQEPER*
Ga0137383_1006141313300012199Vadose Zone SoilVTCISEDGQNVLLELMKEGVRFRSSGVFTKHVMKQLARKIR*
Ga0137386_1108847813300012351Vadose Zone SoilELRNVTCISEDGQNVLLELMKEGVRFRSSGVFTKHVMKRLAHNIRGNVKEPGR*
Ga0137358_1059139243300012582Vadose Zone SoilLLELMKEGVRFRSSGVFTKHVMKQLARRIRRDVQESEG*
Ga0137397_1112053923300012685Vadose Zone SoilELVIELRNVTCISEDGQNVLLELMKEGVRFRSSGVFTKHVMKQLARKIR*
Ga0137397_1114003423300012685Vadose Zone SoilELMKEGVRFRSSGVFTKHVMKQLARRIRRDVQESEG*
Ga0137395_1006502063300012917Vadose Zone SoilVTCISEDGQNVLLELMKEVVRFRSSGVFRKHVMKELARKIR*
Ga0137395_1020733433300012917Vadose Zone SoilGKNVLLELMKGGVRFRSSGVFTKHVMKRLAHKIRRNVKEPER*
Ga0137396_1044282413300012918Vadose Zone SoilGRELEIELRNVTCISEDGKNVLLELMKDGVRFRSSGVFTKHVMKRLARKIRRNVKEPER*
Ga0137359_1062417913300012923Vadose Zone SoilLLELMKEGVRFRSSGVFTKHVMKQLARKIRRNVQGPKK*
Ga0137419_1082533613300012925Vadose Zone SoilSEDGQNVLLELMKEGVRFRSSGVFTKHVMKQLARRIRRDVQESEG*
Ga0137416_1132519813300012927Vadose Zone SoilNVLLELMKEGARFRSSGVFTKHVMKQLARKIRRNVQEPKK*
Ga0137407_1156657413300012930Vadose Zone SoilIELRNVTCISEDGQNVLLELMKEGVRFRSSGVFTKHVMKQLARKIR*
Ga0134110_1006651013300012975Grasslands SoilVIELRSVTCISEDGQNVLLELMKEGVTFRSSGVFRKHV
Ga0182024_1197108223300014501PermafrostSVTEDGENALLELMKEGARFRSGVFTEQVLKRLARKIPRNAQEEKK*
Ga0137414_120906313300015051Vadose Zone SoilCISEDGQNVLLELMKEVVRFRSSGVFRKHVMKELARKIR*
Ga0137411_104813943300015052Vadose Zone SoilADLRGRELEIELRNVTCISEDGQNVLLELMKEGVRFRSSGVFTKHVMKQLARKIR*
Ga0137405_120364023300015053Vadose Zone SoilVIELRNVTCISEDGQNVLLELMKEGVRFRSSGVFTKHVMKQLARRIRRDVQESEG*
Ga0066655_1000246943300018431Grasslands SoilVIELRSVTCISEDGQNVLLELMKEGVTFRSSGVFRKHVMKQLARKIR
Ga0210407_1007013943300020579SoilNVLLELMKEGVRFRSSGVFTKHVMKRLAHKIRRNVKEPER
Ga0210407_1027792913300020579SoilSVLLELMKEGARFHSSGVFTKQVLKRLARKIRGNVQEEK
Ga0210407_1039572823300020579SoilIFVKCLTAITEDGENVLLELMKEGARFHSSGVFTKQVLKRLARKIRGNVQEEK
Ga0210399_1036784433300020581SoilVIELRNVTCISEDGQNVLLELMKEGVKFRSSGVFTKHVMKQLARKIRRNVQELER
Ga0210399_1046187833300020581SoilISEDGQNVLLELMKEGVRFRSSGVFTKHVMKRLAHKIRRNVKERRDEDRQY
Ga0210395_1015541843300020582SoilEAAADLRDRELVIELRNVTCISEDGKNVLLELMKEGVRFRSSGVFTKHVMKQLAHKIRRS
Ga0210395_1037387713300020582SoilTAITEDGENVLLELMKEGASFRSSGVFTKHVLKRLACKIRREFHRKG
Ga0210401_1054218513300020583SoilTEDGENILLELMQEAASFRSSGVFTKQVLERLACMTRGNVQEAKT
Ga0215015_1093489323300021046SoilVIELRNVTCISEEGKNVLLELMKEGVRFRSSGVFTKHVMKRLAREIRRNVKEPER
Ga0210404_1067984423300021088SoilTAITEDGENVLLELMKEGASFRSSGVFTKHVLKRLACKIRRDVS
Ga0210404_1068730413300021088SoilNVLLELMKEGVRFRSWGVFTKHVMKRLAHKIRRNVKEPER
Ga0210406_1070922833300021168SoilSEDGKNVLLELMKEGVRFRSSGVFTKHVMKRLAHKIRRNVRESER
Ga0210405_1042517123300021171SoilGLTAITEDGEQVLLELMKEGAHFRSSGVFTKWVLKCLAIKIRINAREGKR
Ga0210408_1031507023300021178SoilNVLLELMKTGVRFRASGVFTKHVVKRLAREIHRNDQEAKR
Ga0210408_1047673013300021178SoilAITEDGENVLLELMKEGARFHSSGVFTKQVLKRLARKIRGNVQEEK
Ga0210408_1129397513300021178SoilGENVLLELMKEGARFHSSGVFTKQVLKRLARKMRGNVQEEK
Ga0210396_1109988013300021180SoilVLLELMKEGARFHSSGVFTKQVLKRLARRIRGNVQEEK
Ga0210388_1047799223300021181SoilINDYGENVLQELMKEGASFRSSGVFTKHVLKRLAYKIRRDVS
Ga0210388_1180839133300021181SoilNVLLELMKDGVRFRSSGVFTKHVMKRLAHKIPRNVQDPER
Ga0210393_1062159613300021401SoilNVLLELMKEGVRFRSSGVFTKHVMKRLALKIRRNVKEPER
Ga0210397_1031526113300021403SoilDGENVLLDLMKEGASFRSSGVFTKQVLKRMARKIRRDL
Ga0210397_1062736333300021403SoilELVIELRNVTCISEDGKNVLLELMKEGVRFRSSGVFTKHVMKRLAHKIRRNVQEPER
Ga0210394_1157011813300021420SoilELMKEGVRFRSTGVFTRHVMKRLARKIRRNVQEPKK
Ga0210394_1163537523300021420SoilRNVTCISEDGQNVLLELMKEGVRFRSSGVFTRHVMKRLARKIRRNVQEPER
Ga0210384_1180955733300021432SoilNVLLELMKEGVRFRSSGVFTKHVMKRLAHKIRGTVKEPER
Ga0210384_1184398423300021432SoilISEDGENVILELMKEGVRFRCSGVFTKDVLKRLARKIRIDGQTEKR
Ga0210384_1185939213300021432SoilKGLTAVSEDGENILLELMKERARFRSSGVFTKQVLKRLARKIRRNVQEERK
Ga0210391_1041924913300021433SoilDDGENVLQELMKEGASFRSSGVFTKHVLKRLAYKIRRDVS
Ga0210391_1078290033300021433SoilELRSVTCISEDGKNVLLELMKEGVRFRSSGVFTKHVMKQLAHKIRRSV
Ga0210402_1077458523300021478SoilDGENVLLELMKEGASFRSSGVFTKHVLKRLAGKIPRDV
Ga0210409_1041634413300021559SoilRELVIELRNVTCISEDGQNVLLELMKEGVRFRSSGVFTKHVMKRLAHKIRRNVQEPER
Ga0210409_1057024613300021559SoilEKVLMEQMKAGVRFRSSGVFTKQVLKRLARHIRRNVQEEKT
Ga0210409_1069154813300021559SoilGLTAFTEDGENVLLELMKEGARFRSSGVFTKQVLKRLARKIRRNVQEEKK
Ga0210409_1110083713300021559SoilAISEDGEKVLLELMKEGACFRSSGVFTKHVLKRLARKIRRGI
Ga0210409_1148854923300021559SoilLLELMKEGVRFRSSGVFTKHVMKRLAHKIRGTVKEPER
Ga0210409_1172855313300021559SoilEDGQNVLLELMKEGVRFRSSGVFTKHVMKRLARKIRRNVQEPER
Ga0209375_122304113300026329SoilEDGENVILELMKEGAPFRSSGVFTKQVLKRLARKVRSDVEEAKR
Ga0209804_1001925103300026335SoilVTCISEDGQNVLLELMKEGVRFRSSGVFTKHVMKQLARKIR
Ga0257150_103582613300026356SoilTEDGENVLLELMKEGASFRSSGVFTKQILKRMARKIRQDV
Ga0257147_101285013300026475SoilLLELMKAGACFRCAGVFTKHVLKRLALKIRSNVLEEKA
Ga0209420_116140413300027648Forest SoilTEDGENVLLELMKEGASFRSSGVFTRQVLKRMARKIHRDV
Ga0209693_1033841423300027855SoilAITEDGENVLLDLMKEGASFRSSGVFTKQVLKRMARKIRRDP
Ga0209380_1069496423300027889SoilIDLKGLTAITEDGENVLLELMKEGASFRSSGVFTKHVLKRLACKIRRDVS
Ga0209624_1043897523300027895Forest SoilEDGENVLLELMKEGASFRSSGVFTKQVLKRMTRKFRQDV
Ga0308309_1034097743300028906SoilLRNVTCISEDGKNVLLELMKEGVRFRSSGVFTKHVMKRLAHKIRGNVKEPER
Ga0222749_1033587233300029636SoilCISEDGQNVLLELMKEGVRFRSSGVFTKHVMKRLARKIRRNVQEPER
Ga0222749_1073109013300029636SoilELMKEGFRFRSSGVFTKHVMKRLARKIHSNVQKPER
Ga0170818_10498767013300031474Forest SoilNVLLDLMKEGVRFRSSGVFTKHVMKRLAHKIRRNVQEQER
Ga0307476_1125994823300031715Hardwood Forest SoilLTAITEDGENVLLELMKEGARFHSSGVFARQVLKQLARKIRGNVQEEKR
Ga0307469_1232422813300031720Hardwood Forest SoilALLELMKDGVRFRSSGVFTKHVMKRLSRKIRSNVQEPER
Ga0306918_1090947823300031744SoilTAITEDGENVLLELMKEGARFRSAGVFTKHVLKRLARNIRSNAQEVKR
Ga0307477_1036135833300031753Hardwood Forest SoilNVLLELMKEGVRFRSTGVFTKHVMKQLARKIRRNVQEPKK
Ga0307477_1045391313300031753Hardwood Forest SoilRNVTCISEDGQNVLVELMKEGVRFRSSGVFTKHVMKRLAYKIRRNVQEPVR
Ga0307475_1038178313300031754Hardwood Forest SoilELRNVTCISEDGQKVLLELMQEGVRFRSSGVFTKHVMKRLAREIRRNVKEPEG
Ga0307475_1062831423300031754Hardwood Forest SoilENVLLELMKEGARFHSSGVFTKQVLKRLARKIRGNVQEEK
Ga0307478_1169768013300031823Hardwood Forest SoilVADLRGREFVIELRNVTCISEDGQNVLLELMKEGVRFRSSGVFTKHVMKQLARKIRRSVRDPKG
Ga0306921_1245043923300031912SoilLRELIKEGARFRSSGVFTKQVLKRLAREICRNFQEAKR
Ga0307479_1041418023300031962Hardwood Forest SoilLRNVTCISEDGKNVLLELIKEGVRFRSSGVFTKHVMKRLAHKIRRNVQEPER
Ga0307479_1068061613300031962Hardwood Forest SoilEDGENVLLELMKEGASFRSSGVFTKHVLKRLACKIRRDVS
Ga0307470_1044675623300032174Hardwood Forest SoilKKGARFHSSGVFTKEVLKRLARKIRREVQEERNEQRS
Ga0307471_10059149133300032180Hardwood Forest SoilCISKDGENVLLELMKEGVRFRSSGVFTKHIMKRLARKSRRNAGEQRDERQY
Ga0307471_10431005713300032180Hardwood Forest SoilADLRNRELVIELRNVTCISEDGQNVLLELMKEGVRFRSSGVFTKHVMKRLARKIRRNVQEPER

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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