NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F104972

Metagenome Family F104972

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F104972
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 42 residues
Representative Sequence MKVSECCGARLLKYDRNWDDGICSECKEHSPAHKEKELTE
Number of Associated Samples 47
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 59.00 %
% of genes near scaffold ends (potentially truncated) 17.00 %
% of genes from short scaffolds (< 2000 bps) 91.00 %
Associated GOLD sequencing projects 39
AlphaFold2 3D model prediction Yes
3D model pTM-score0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (50.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(70.000 % of family members)
Environment Ontology (ENVO) Unclassified
(97.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(98.000 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 5.88%    β-sheet: 27.94%    Coil/Unstructured: 66.18%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.51
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF05866RusA 8.00
PF00145DNA_methylase 2.00
PF13455MUG113 2.00
PF04026SpoVG 2.00
PF03118RNA_pol_A_CTD 1.00
PF08401ArdcN 1.00
PF10544T5orf172 1.00
PF01381HTH_3 1.00
PF01507PAPS_reduct 1.00
PF03237Terminase_6N 1.00
PF14297DUF4373 1.00
PF00085Thioredoxin 1.00
PF02195ParBc 1.00
PF06147DUF968 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG4570Holliday junction resolvase RusA (prophage-encoded endonuclease)Replication, recombination and repair [L] 8.00
COG0270DNA-cytosine methylaseReplication, recombination and repair [L] 2.00
COG2088DNA- and RNA-binding protein SpoVG, cell septation regulatorTranscription [K] 2.00
COG0202DNA-directed RNA polymerase, alpha subunit/40 kD subunitTranscription [K] 1.00
COG4227Antirestriction protein ArdCReplication, recombination and repair [L] 1.00

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms54.00 %
UnclassifiedrootN/A46.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002514|JGI25133J35611_10108461Not Available808Open in IMG/M
3300006736|Ga0098033_1207589All Organisms → cellular organisms → Bacteria542Open in IMG/M
3300006738|Ga0098035_1160612Not Available761Open in IMG/M
3300006738|Ga0098035_1195637All Organisms → cellular organisms → Bacteria → FCB group676Open in IMG/M
3300006738|Ga0098035_1205130Not Available657Open in IMG/M
3300006738|Ga0098035_1284037Not Available541Open in IMG/M
3300006738|Ga0098035_1292115Not Available532Open in IMG/M
3300006750|Ga0098058_1026536All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → unclassified Flammeovirgaceae → Flammeovirgaceae bacterium1685Open in IMG/M
3300006750|Ga0098058_1027057All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1668Open in IMG/M
3300006750|Ga0098058_1055386Not Available1112Open in IMG/M
3300006750|Ga0098058_1062355Not Available1038Open in IMG/M
3300006750|Ga0098058_1109763Not Available742Open in IMG/M
3300006750|Ga0098058_1132444All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium664Open in IMG/M
3300006751|Ga0098040_1073083All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium1048Open in IMG/M
3300006751|Ga0098040_1142368Not Available711Open in IMG/M
3300006751|Ga0098040_1218542All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium555Open in IMG/M
3300006752|Ga0098048_1127897All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium762Open in IMG/M
3300006753|Ga0098039_1026632All Organisms → Viruses → Predicted Viral2062Open in IMG/M
3300006753|Ga0098039_1026647All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium2062Open in IMG/M
3300006753|Ga0098039_1143476All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium817Open in IMG/M
3300006753|Ga0098039_1187385All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium703Open in IMG/M
3300006753|Ga0098039_1289025Not Available548Open in IMG/M
3300006753|Ga0098039_1321100Not Available516Open in IMG/M
3300006754|Ga0098044_1022851Not Available2795Open in IMG/M
3300006754|Ga0098044_1130629All Organisms → cellular organisms → Bacteria1015Open in IMG/M
3300006754|Ga0098044_1201355Not Available783Open in IMG/M
3300006754|Ga0098044_1218683All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium745Open in IMG/M
3300006754|Ga0098044_1228192All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium726Open in IMG/M
3300006754|Ga0098044_1253570Not Available681Open in IMG/M
3300006754|Ga0098044_1367150Not Available544Open in IMG/M
3300006754|Ga0098044_1394405All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium521Open in IMG/M
3300006789|Ga0098054_1207617Not Available713Open in IMG/M
3300006789|Ga0098054_1236640All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium661Open in IMG/M
3300006793|Ga0098055_1384541Not Available520Open in IMG/M
3300006927|Ga0098034_1013564All Organisms → Viruses → Predicted Viral2553Open in IMG/M
3300006927|Ga0098034_1020120All Organisms → Viruses → Predicted Viral2054Open in IMG/M
3300006927|Ga0098034_1062930All Organisms → Viruses → Predicted Viral1083Open in IMG/M
3300006927|Ga0098034_1100767All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium827Open in IMG/M
3300007504|Ga0104999_1014850All Organisms → cellular organisms → Bacteria5084Open in IMG/M
3300007963|Ga0110931_1262884Not Available512Open in IMG/M
3300008050|Ga0098052_1047301Not Available1871Open in IMG/M
3300008050|Ga0098052_1051373All Organisms → cellular organisms → Bacteria1777Open in IMG/M
3300008050|Ga0098052_1056425All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → unclassified Flammeovirgaceae → Flammeovirgaceae bacterium1676Open in IMG/M
3300008050|Ga0098052_1194653All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium789Open in IMG/M
3300008216|Ga0114898_1113999All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → unclassified Flammeovirgaceae → Flammeovirgaceae bacterium799Open in IMG/M
3300008217|Ga0114899_1162929Not Available720Open in IMG/M
3300008217|Ga0114899_1239247Not Available563Open in IMG/M
3300008218|Ga0114904_1154017Not Available539Open in IMG/M
3300008218|Ga0114904_1162590All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium520Open in IMG/M
3300008219|Ga0114905_1086486All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → unclassified Flammeovirgaceae → Flammeovirgaceae bacterium1101Open in IMG/M
3300008219|Ga0114905_1110695Not Available943Open in IMG/M
3300008219|Ga0114905_1154281Not Available763Open in IMG/M
3300008219|Ga0114905_1155013All Organisms → cellular organisms → Bacteria761Open in IMG/M
3300008219|Ga0114905_1237657All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes577Open in IMG/M
3300008220|Ga0114910_1074724All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium1042Open in IMG/M
3300009008|Ga0115649_1063668Not Available4489Open in IMG/M
3300009173|Ga0114996_10812902Not Available676Open in IMG/M
3300009173|Ga0114996_11164917Not Available541Open in IMG/M
3300009413|Ga0114902_1126616All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium664Open in IMG/M
3300009413|Ga0114902_1143655All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium609Open in IMG/M
3300009418|Ga0114908_1118208All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium873Open in IMG/M
3300009418|Ga0114908_1262332All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium520Open in IMG/M
3300009603|Ga0114911_1064525All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium1112Open in IMG/M
3300009603|Ga0114911_1107150All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium811Open in IMG/M
3300009603|Ga0114911_1226235All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium500Open in IMG/M
3300009604|Ga0114901_1123450All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium796Open in IMG/M
3300009605|Ga0114906_1080430All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium1194Open in IMG/M
3300009605|Ga0114906_1231857All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium608Open in IMG/M
3300010151|Ga0098061_1034642Not Available2014Open in IMG/M
3300010151|Ga0098061_1059015All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → unclassified Flammeovirgaceae → Flammeovirgaceae bacterium1481Open in IMG/M
3300010151|Ga0098061_1063936Not Available1412Open in IMG/M
3300010151|Ga0098061_1173602All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium773Open in IMG/M
3300010151|Ga0098061_1214385Not Available679Open in IMG/M
3300010151|Ga0098061_1288504Not Available566Open in IMG/M
3300010153|Ga0098059_1315147All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium597Open in IMG/M
3300010155|Ga0098047_10234746Not Available698Open in IMG/M
3300010155|Ga0098047_10294393All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium613Open in IMG/M
3300010155|Ga0098047_10353835Not Available552Open in IMG/M
3300010155|Ga0098047_10400945All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium513Open in IMG/M
3300010883|Ga0133547_10852042All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium1782Open in IMG/M
3300010883|Ga0133547_11559514All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium1236Open in IMG/M
3300017702|Ga0181374_1034772All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium877Open in IMG/M
3300017775|Ga0181432_1165161Not Available685Open in IMG/M
3300017775|Ga0181432_1269247All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium539Open in IMG/M
(restricted) 3300024520|Ga0255047_10649969Not Available527Open in IMG/M
3300025072|Ga0208920_1063709Not Available718Open in IMG/M
3300025096|Ga0208011_1048589Not Available989Open in IMG/M
3300025097|Ga0208010_1062021Not Available812Open in IMG/M
3300025108|Ga0208793_1193618Not Available513Open in IMG/M
3300025109|Ga0208553_1085828Not Available741Open in IMG/M
3300025114|Ga0208433_1136721Not Available585Open in IMG/M
3300025122|Ga0209434_1154676Not Available621Open in IMG/M
3300025131|Ga0209128_1001871Not Available13981Open in IMG/M
3300025133|Ga0208299_1046754All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → unclassified Flammeovirgaceae → Flammeovirgaceae bacterium1676Open in IMG/M
3300025133|Ga0208299_1205535Not Available581Open in IMG/M
3300025270|Ga0208813_1080450All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium672Open in IMG/M
3300025274|Ga0208183_1057104All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium770Open in IMG/M
3300026115|Ga0208560_1005062All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium1080Open in IMG/M
3300027847|Ga0209402_10381618Not Available854Open in IMG/M
3300032011|Ga0315316_11311448Not Available577Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine70.00%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean23.00%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater2.00%
Marine OceanicEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic1.00%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.00%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine1.00%
Water ColumnEnvironmental → Aquatic → Marine → Coastal → Unclassified → Water Column1.00%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater1.00%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002514Marine viral communities from the Pacific Ocean - ETNP_6_85EnvironmentalOpen in IMG/M
3300006736Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaGEnvironmentalOpen in IMG/M
3300006738Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaGEnvironmentalOpen in IMG/M
3300006750Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaGEnvironmentalOpen in IMG/M
3300006751Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaGEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006753Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaGEnvironmentalOpen in IMG/M
3300006754Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006927Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaGEnvironmentalOpen in IMG/M
3300007504Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate aEnvironmentalOpen in IMG/M
3300007963Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2)EnvironmentalOpen in IMG/M
3300008050Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaGEnvironmentalOpen in IMG/M
3300008216Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_GeostarEnvironmentalOpen in IMG/M
3300008217Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215EnvironmentalOpen in IMG/M
3300008218Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6EnvironmentalOpen in IMG/M
3300008219Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05EnvironmentalOpen in IMG/M
3300008220Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908EnvironmentalOpen in IMG/M
3300009008Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 250-2.7umEnvironmentalOpen in IMG/M
3300009173Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134EnvironmentalOpen in IMG/M
3300009413Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12EnvironmentalOpen in IMG/M
3300009418Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17EnvironmentalOpen in IMG/M
3300009603Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904EnvironmentalOpen in IMG/M
3300009604Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16EnvironmentalOpen in IMG/M
3300009605Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9EnvironmentalOpen in IMG/M
3300010151Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaGEnvironmentalOpen in IMG/M
3300010153Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaGEnvironmentalOpen in IMG/M
3300010155Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaGEnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300017702Marine viral communities from the Subarctic Pacific Ocean - Lowphox_10 viral metaGEnvironmentalOpen in IMG/M
3300017775Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17EnvironmentalOpen in IMG/M
3300024520 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_1EnvironmentalOpen in IMG/M
3300025072Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025096Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025097Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025108Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025109Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025114Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025122Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)EnvironmentalOpen in IMG/M
3300025131Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)EnvironmentalOpen in IMG/M
3300025133Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025270Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904 (SPAdes)EnvironmentalOpen in IMG/M
3300025274Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51 (SPAdes)EnvironmentalOpen in IMG/M
3300026115Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3827_250 (SPAdes)EnvironmentalOpen in IMG/M
3300027847Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126 (SPAdes)EnvironmentalOpen in IMG/M
3300032011Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI25133J35611_1010846113300002514MarineMKISECCGAKLTNYDKNWDDGICIECKEHSPAINEEVKELRMEIQK*
Ga0098033_120758913300006736MarineIMVKVSECCGARLLKYDKNWDDGICSKCKEHSPAQKEKELINE*
Ga0098035_116061213300006738MarineMKVSECCGERLMKYDKNWDDGVCSKCNEHSPAQTEEEPVDA*
Ga0098035_119563733300006738MarineMESECCGARLLKYDRNWDDGICSECKEHSPAHKEKELTE*
Ga0098035_120513033300006738MarineMKVSECCNARLLKYDRNWDDGICSECKEHTPAQKEEKGELINEG*
Ga0098035_128403723300006738MarineKVSECCGAKLTNYDKNWDDGICIECKEHSPAQTEEKV*
Ga0098035_129211533300006738MarineMKTSECCNARLMKYDRNWDDGICSECNEHSPAHKEKELIDEG*
Ga0098058_102653623300006750MarineMVKVSECCGAKLMKYDKNWDDGICSECKEHSPAHKEKELTE*
Ga0098058_102705733300006750MarineMKVSECCNARLLKYDSNWDDGICFECKEHSPAQKEEGELINE*
Ga0098058_105538643300006750MarineMKLSECCNARLLRYDRTWDDGICSECKEHTPAQKEEGELINEGK*
Ga0098058_106235523300006750MarineMKVSECCNARLLKYDRTWDDGICSKCKEHTPAQKEEKGELIE*
Ga0098058_110976333300006750MarineMKVSECCGAKLTNYDKNWDDGICIECKEHSPAQTEEKV*
Ga0098058_113244413300006750MarineMVKVSECCGARLLRYDKNWDDGICSECKEHSPAHKEKE
Ga0098040_107308343300006751MarineMKVSECCGARLMKYDRNWDDGVCSECNEHSPAHKEEELTE*
Ga0098040_114236813300006751MarineMKVSECCGERLMKYDKNWDDGVCSKCNEHSPAQTEEEPVDV*
Ga0098040_121854223300006751MarineMVKVSECCGARLMKYDKNWDDGVCSECKEHSPAQKEKELTE*
Ga0098048_112789723300006752MarineMVKVSECCGARLLKYDRNWDDGICSECKEHSPAHKEKELTE*
Ga0098039_102663243300006753MarineMKVSECCGAKLTNYDKNWDDGICIECKEHSPAQIEEEV*
Ga0098039_102664733300006753MarineMVKVSECCNARLLKYDRTWDDGICSECKEHTPSQKEEKGELTE*
Ga0098039_114347643300006753MarineMKTSECCGARLLKYDKNWDDGICSECKEHSPAQKEEGELVE*
Ga0098039_118738543300006753MarineMKLSDCCGARLLRYDRNWDDGICSECKEHSPAQEEE
Ga0098039_128902523300006753MarineMKLSECCGERLTRYDKNWDDGVCSKCNEHSPAQKEGEPVDA*
Ga0098039_132110023300006753MarineMKVSECCGARLWKYDRNWDDGICSKCNEHSPAHKEKELINERQ*
Ga0098044_102285163300006754MarineMKVSECCNARLLRYDRTWDDGICSECKEHTPAQKEEGELINEGK*
Ga0098044_113062913300006754MarineLKIRSNMKVSECCGAKLTNYDKNWDDGICIECKEHSPAQTEEEVC*
Ga0098044_120135543300006754MarineCCNARLMKYDRNWDDGICSECNEHSPAQKEKELTE*
Ga0098044_121868313300006754MarineMVKVSECCGARLMKYDRNWDDGICSECNEHSPAHKEKELINEG*
Ga0098044_122819233300006754MarineMVKVSECCGARLLKYDRNWDDGVCSECNEHSPAHKEEELTE*
Ga0098044_125357023300006754MarineMKVSECCNARLLKYDSNWDDGICFECKEHSPAQKEEGELVE*
Ga0098044_136715023300006754MarineMKLSECCGERLTCYDKNWDDGVCSKCNEHSPAQTEEEPVDV*
Ga0098044_139440513300006754MarineMKLSDCCGARLLRYDRNWDDGICSECKEHSPAHKEKELTE*
Ga0098054_120761733300006789MarineAVKLRITMKLSECCGERLTRYDKNWDDGVCSKCNEHSPAQTEEEPVDV*
Ga0098054_123664033300006789MarineMVKVSECCGARLMKYDRNWDDGICSECNEHSPARKEKELINEG*
Ga0098055_138454113300006793MarineMKVSECCGERLMKYDKNWDDGVCSKCNEHTPAQKEEEPVDA*
Ga0098034_101356423300006927MarineMVKVSECCNARLLKYDRTWDDGICSECKEHTPAQKEEKGELTE*
Ga0098034_102012063300006927MarineMESECCGARLLKYDRNWDDGICSECKEHSPAHKEKELINEG*
Ga0098034_106293033300006927MarineMKESECCGARLLKYDRNWDDGICSECKEHSPAQKEEGELINE*
Ga0098034_110076743300006927MarineMVKVSECCGAKLMKYDKSWDDGICSECKEHSPAHKEKELTE
Ga0104999_101485053300007504Water ColumnMNISECCGERLTYYNKEWDDGICSKCNEHSPASREEEEVE*
Ga0110931_126288413300007963MarineMVKVSECCGARLMKYDKNWDDGICSECNEHSPAHKEKELTE*
Ga0098052_104730113300008050MarineRITMKLSECCGERLTRYDKNWDDGVCSKCNEHSPAQTEEEPVDV*
Ga0098052_105137363300008050MarineMKVSECCGERLTRYDKNWDDGVCSKCNEHTPAQKEEEPVDA*
Ga0098052_105642553300008050MarineMVKVSECCGARLMKYDRNWDDGVCSECNEHSPAQKEKELINEGY*
Ga0098052_119465333300008050MarineMKVSECCGARLLKYDRNWDDGICSECKEHSPAHKEKELTE*
Ga0114898_111399933300008216Deep OceanMKVSECCGARLLRYDKNWDAGVCSECNEHSPAHKEKELTE*
Ga0114899_116292933300008217Deep OceanMKVSECCGAKLMKYDKNWDDGICSECNEHSPAHKEKELTE*
Ga0114899_123924723300008217Deep OceanMKVSECCGERLLKFDKAWQDGICSKCKEHSPAQKEEGELIE*
Ga0114904_115401713300008218Deep OceanMKISECCGARLTHYDKNWDDGICSECNEHSPAQKEKGELVNEE*
Ga0114904_116259033300008218Deep OceanMKVSECCGARLLRYDRNWDDGVCSECNEHTPAHKEKELTE*
Ga0114905_108648623300008219Deep OceanMVKVSECCGARLMKYDKNWDDGICSECNEHSPAHKEKELINEG*
Ga0114905_111069513300008219Deep OceanRYTARQMKVSECCGARLLRYDRNWDDGVCSECNEHTPAHKEKELTE*
Ga0114905_115428123300008219Deep OceanMKVSECCNARLLKYDRTWDDGICSECKEHTPAQKEEKGELIE*
Ga0114905_115501313300008219Deep OceanMVKVSECCNARLLKYNRTWDDGICSECKEHTPSKKEEKGELTE*
Ga0114905_123765733300008219Deep OceanSECCGARLLKYDTSWDDGICSECKEHSPAHKEEELTE*
Ga0114910_107472433300008220Deep OceanMKVSECCGAKLMKYDKNWDDGICSECNEHSPAHKEKELINEG*
Ga0115649_106366823300009008MarineMNISECCGERLTYYNKEWDDGICSKCNEHSPALREEEEVE*
Ga0114996_1081290223300009173MarineMKVSECCNARLLKYDRNWDDGICSECKEHSPAQEEEGELIE*
Ga0114996_1116491733300009173MarineMNENISECCKARLTRYDKNWDDGVCAECNEHSPALREKELDTV*
Ga0114902_112661623300009413Deep OceanMKVSECCNARLLKYDRTWDDGICSECKEHTPAQKEEKGELIE
Ga0114902_114365533300009413Deep OceanMKVSECCGARLLRYDKNWDDGICSECNEHSPAHKEKELINEG*
Ga0114908_111820813300009418Deep OceanMKVSECCNARLLKYDRTWDDGICSECKEHTPAQKQKKGELTE*
Ga0114908_126233213300009418Deep OceanMKLSECCGARLLKYDKNWDDGICSECKEHSPAHKEKELTE*
Ga0114911_106452543300009603Deep OceanMVKVSECCGARLMKYDKNWDDGICSECKEHSPAHKEKELINEG*
Ga0114911_110715033300009603Deep OceanMVSECCGARLLKYDTSWDDGICSECKEHSPAQKEKEKE*
Ga0114911_122623513300009603Deep OceanMKVSECCGARLLRYDKNWDDGVCSECNEHSPAHKEKELTE*
Ga0114901_112345023300009604Deep OceanMVKVSECCNERLLKYNRTWDDGICSKCKEHTPAQKQKKGELTE*
Ga0114906_108043043300009605Deep OceanMVSECCGARLLKYDTSWDDGICSECKEHSPAHKEEELTE*
Ga0114906_123185723300009605Deep OceanMKVSECCGERLTRYDKNWDDGVCSKCNEHSPAQKEEGELINE*
Ga0098061_103464233300010151MarineMKLSECCGERLTRYDKNWDDGVCSKCNEHSPAQTEEEPVDV*
Ga0098061_105901513300010151MarineMKVSECCGAKLTNYDKNWDDGICIECKEHSPAQTEEEVC*
Ga0098061_106393653300010151MarineMKVSECCNARLLRYDRTWDDGICSECKEHTPAQKEEKGELTE*
Ga0098061_117360233300010151MarineMVKVSECCGARLLKYDRNWDDGVCSECNEHSPAHKEKELTE*
Ga0098061_121438543300010151MarineMKMSECCGARLMKYDRNWDDGICSECNEHTPAHKEKELIDER*
Ga0098061_128850423300010151MarineMKVSECCGARLLKYDKNWDDGVCSKCNEHSPAQTEEEPVDA*
Ga0098059_131514733300010153MarineMVKVSECCGARLMKYDRNWDDGVCSECNEHSPAHKEKELTE*
Ga0098047_1023474613300010155MarineMKVSECCNARLLKYDRAWDDGICSKCKEHTPAQKEEKGELIE*
Ga0098047_1029439333300010155MarineMKVSECCGARLLKYDKNWDDGICLECKEHSPAQKNPEKP
Ga0098047_1035383513300010155MarineRITMKVSECCGARLLKYDKNWDDGVCSKCNEHSPAQTEEEPVDA*
Ga0098047_1040094513300010155MarineMVSECCGARLLKYDRNWDDGVCSECNEHSPAHKEEELTE*
Ga0133547_1085204253300010883MarineMVKVSECCNAKLWKYDRTWDDGICSKCKEHSPAQKEEKGELINEE*
Ga0133547_1155951443300010883MarineMKVSECCNARLLKYDRNWDDGICSECKEHSPAQEEEGELTQ*
Ga0181374_103477233300017702MarineMVKVSECCGARLMKYDRNWDDGVCSECNEHSPAHKEEELTE
Ga0181432_116516133300017775SeawaterMKVSECCNERLLKYNRTWDDGICSKCKEHTPAQKEEELTE
Ga0181432_126924723300017775SeawaterMKVSECCNARLIKYDRNWDDGICSECKEHSPAQKEEGELVE
(restricted) Ga0255047_1064996923300024520SeawaterMKVSECCGERLTRYDKNWDDGVCSKCNEHSPAQKEEGELVE
Ga0208920_106370923300025072MarineMKVSECCNARLLKYDRTWDDGICSKCKEHTPAQKEEKGELIE
Ga0208011_104858923300025096MarineMESECCGARLLKYDRNWDDGICSECKEHSPAHKEKELTE
Ga0208010_106202133300025097MarineMKVSECCGERLTRYDKNWDDGVCSKCNEHSPAQKEGEPVDA
Ga0208793_119361813300025108MarineELVSECCGERLMKYDKNWDDGVCSKCNEHTPAQKEEEPVDA
Ga0208553_108582823300025109MarineMESECCGARLWKYDRNWDDGICSKCNEHSPAHKEKELINERQ
Ga0208433_113672123300025114MarineMKVSECCGERLMKYDKNWDDGVCSKCNEHSPAQTEEEPVDA
Ga0209434_115467613300025122MarineMTEEKLSECCNAQLLKYDKNWDDGICSECKEHSPAQKEEGELINE
Ga0209128_100187123300025131MarineMKISECCGAKLTNYDKNWDDGICIECKEHSPAINEEVKELRMEIQK
Ga0208299_104675453300025133MarineMVKVSECCGARLMKYDRNWDDGVCSECNEHSPAQKEKELINEGY
Ga0208299_120553513300025133MarineMKLSECCGERLTRYDKNWDDGVCSKCNEHSPAQTEEEPVDV
Ga0208813_108045023300025270Deep OceanMVKVSECCGARLMKYDKNWDDGICSECKEHSPAQEEEEQAVVD
Ga0208183_105710423300025274Deep OceanMKVSECCGAKLMKYDKNWDDGICSECKEHSPAQKEKELTE
Ga0208560_100506233300026115Marine OceanicMVKVSECCGARLMKYDRNWDDGVCSECNEHSPAHKEKELTE
Ga0209402_1038161813300027847MarineMKVSECCNARLLKYDRNWDDGICSECKEHSPAQEE
Ga0315316_1131144843300032011SeawaterMKESECCGARLLKYDKNWDDGICSECKEHSPAQKEEGELVE

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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