NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105040

Metagenome / Metatranscriptome Family F105040

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105040
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 58 residues
Representative Sequence MTSSVPAGQTDVDDWFDLDKYRQAAGVAYEFSKKKMETAGEQERETIGKGAEEQR
Number of Associated Samples 84
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 28.57 %
% of genes near scaffold ends (potentially truncated) 48.00 %
% of genes from short scaffolds (< 2000 bps) 42.00 %
Associated GOLD sequencing projects 77
AlphaFold2 3D model prediction Yes
3D model pTM-score0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (53.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(27.000 % of family members)
Environment Ontology (ENVO) Unclassified
(42.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(45.000 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 50.60%    β-sheet: 0.00%    Coil/Unstructured: 49.40%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.28
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF13649Methyltransf_25 1.00


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A53.00 %
All OrganismsrootAll Organisms47.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002488|JGI25128J35275_1025183All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl1429Open in IMG/M
3300005613|Ga0074649_1045811All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl1955Open in IMG/M
3300006639|Ga0079301_1128128All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl761Open in IMG/M
3300006639|Ga0079301_1136928All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl730Open in IMG/M
3300006802|Ga0070749_10280488All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl938Open in IMG/M
3300006810|Ga0070754_10030132All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl3038Open in IMG/M
3300006916|Ga0070750_10276343All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl723Open in IMG/M
3300007346|Ga0070753_1083386All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl1265Open in IMG/M
3300007540|Ga0099847_1043987All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl1415Open in IMG/M
3300007542|Ga0099846_1208742All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl687Open in IMG/M
3300007542|Ga0099846_1222344All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl661Open in IMG/M
3300007960|Ga0099850_1028676All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl2442Open in IMG/M
3300008012|Ga0075480_10325334All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl774Open in IMG/M
3300010297|Ga0129345_1073321All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl1288Open in IMG/M
3300010300|Ga0129351_1397690All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl514Open in IMG/M
3300010354|Ga0129333_10963894All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl718Open in IMG/M
3300010370|Ga0129336_10327187All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl847Open in IMG/M
3300012706|Ga0157627_1174138All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl527Open in IMG/M
(restricted) 3300013131|Ga0172373_10539961All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl704Open in IMG/M
(restricted) 3300013131|Ga0172373_10820209All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl542Open in IMG/M
3300016699|Ga0180058_1038799All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl548Open in IMG/M
3300017707|Ga0181363_1016756All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl1460Open in IMG/M
3300017716|Ga0181350_1143710All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl560Open in IMG/M
3300017754|Ga0181344_1209844All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl545Open in IMG/M
3300017777|Ga0181357_1292347All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl555Open in IMG/M
3300017788|Ga0169931_10834744All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl588Open in IMG/M
3300017967|Ga0181590_10459242All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl894Open in IMG/M
3300017967|Ga0181590_10809307All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl623Open in IMG/M
3300018682|Ga0188851_1037401All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl516Open in IMG/M
3300019717|Ga0193972_1026352All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl650Open in IMG/M
3300020417|Ga0211528_10118167Not Available1062Open in IMG/M
3300020455|Ga0211664_10473658All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl574Open in IMG/M
3300022057|Ga0212025_1060589All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl654Open in IMG/M
3300022179|Ga0181353_1049467All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl1103Open in IMG/M
3300022190|Ga0181354_1020529All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl2091Open in IMG/M
3300022934|Ga0255781_10431272All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl549Open in IMG/M
3300025771|Ga0208427_1155614All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl752Open in IMG/M
3300025889|Ga0208644_1099120All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl1439Open in IMG/M
3300027393|Ga0209867_1003607All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl2204Open in IMG/M
3300027888|Ga0209635_10709827All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl734Open in IMG/M
3300027899|Ga0209668_10878576All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl604Open in IMG/M
3300031565|Ga0307379_10386515All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl1346Open in IMG/M
3300031673|Ga0307377_11097858All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl527Open in IMG/M
3300031952|Ga0315294_11570714Not Available511Open in IMG/M
3300032118|Ga0315277_11139468All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl698Open in IMG/M
3300033981|Ga0334982_0029138All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl3159Open in IMG/M
3300034061|Ga0334987_0061988All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl3034Open in IMG/M
3300034072|Ga0310127_258329All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl615Open in IMG/M
3300034106|Ga0335036_0013780All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl6598Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous27.00%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake16.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater12.00%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient10.00%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil5.00%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment4.00%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh3.00%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake2.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine2.00%
Marine SedimentEnvironmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment2.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine2.00%
Hypersaline Lake SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment2.00%
Deep SubsurfaceEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface2.00%
SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment1.00%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment1.00%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment1.00%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment1.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater1.00%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater1.00%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater1.00%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater1.00%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment1.00%
SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sand1.00%
Fracking WaterEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water1.00%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002488Marine viral communities from the Pacific Ocean - ETNP_2_60EnvironmentalOpen in IMG/M
3300005613Saline sediment microbial communities from Etoliko Lagoon, Greece - sedimentEnvironmentalOpen in IMG/M
3300006639Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11EnvironmentalOpen in IMG/M
3300006790Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaGEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006875Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300007346Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31EnvironmentalOpen in IMG/M
3300007538Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007539Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaGEnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007541Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaGEnvironmentalOpen in IMG/M
3300007542Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaGEnvironmentalOpen in IMG/M
3300007960Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaGEnvironmentalOpen in IMG/M
3300008012Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300009009Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015EnvironmentalOpen in IMG/M
3300010297Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNAEnvironmentalOpen in IMG/M
3300010299Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_DNAEnvironmentalOpen in IMG/M
3300010300Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNAEnvironmentalOpen in IMG/M
3300010354Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNAEnvironmentalOpen in IMG/M
3300010368Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNAEnvironmentalOpen in IMG/M
3300010370Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNAEnvironmentalOpen in IMG/M
3300012706Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES159 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300013129 (restricted)Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 10cmEnvironmentalOpen in IMG/M
3300013131 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10mEnvironmentalOpen in IMG/M
3300013132 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_9.5mEnvironmentalOpen in IMG/M
3300013310Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES153 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300016699Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES160 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017707Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MLB.S.NEnvironmentalOpen in IMG/M
3300017716Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.DEnvironmentalOpen in IMG/M
3300017722Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017747Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.NEnvironmentalOpen in IMG/M
3300017754Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.DEnvironmentalOpen in IMG/M
3300017761Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017777Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300017784Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300017785Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300017788Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20LEnvironmentalOpen in IMG/M
3300017967Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017987Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_1 metaGEnvironmentalOpen in IMG/M
3300018682Metatranscriptome of marine microbial communities from Baltic Sea - GS680_0p1EnvironmentalOpen in IMG/M
3300019717Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRT_8-9_MGEnvironmentalOpen in IMG/M
3300020074Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200mEnvironmentalOpen in IMG/M
3300020109Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015016 Mahale Deep Cast 400mEnvironmentalOpen in IMG/M
3300020417Marine microbial communities from Tara Oceans - TARA_B100000073 (ERX556034-ERR599082)EnvironmentalOpen in IMG/M
3300020455Marine microbial communities from Tara Oceans - TARA_B100000965 (ERX555917-ERR599081)EnvironmentalOpen in IMG/M
3300021379Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247EnvironmentalOpen in IMG/M
3300022057Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v2)EnvironmentalOpen in IMG/M
3300022179Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.NEnvironmentalOpen in IMG/M
3300022190Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.NEnvironmentalOpen in IMG/M
3300022200Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022407Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300022934Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaGEnvironmentalOpen in IMG/M
3300024865Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Colum_RepC_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300025646Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025647Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025655Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025759Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)EnvironmentalOpen in IMG/M
3300025771Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025828Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025889Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)EnvironmentalOpen in IMG/M
3300027393Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_4-Nov-14 (SPAdes)EnvironmentalOpen in IMG/M
3300027720Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)EnvironmentalOpen in IMG/M
3300027785Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027888Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-30_32 (SPAdes)EnvironmentalOpen in IMG/M
3300027899Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)EnvironmentalOpen in IMG/M
3300027917Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)EnvironmentalOpen in IMG/M
3300031565Soil microbial communities from Risofladan, Vaasa, Finland - UN-2EnvironmentalOpen in IMG/M
3300031566Soil microbial communities from Risofladan, Vaasa, Finland - UN-1EnvironmentalOpen in IMG/M
3300031669Soil microbial communities from Risofladan, Vaasa, Finland - TR-1EnvironmentalOpen in IMG/M
3300031673Soil microbial communities from Risofladan, Vaasa, Finland - TR-3EnvironmentalOpen in IMG/M
3300031952Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40EnvironmentalOpen in IMG/M
3300032073Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416EnvironmentalOpen in IMG/M
3300032116Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119EnvironmentalOpen in IMG/M
3300032118Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15EnvironmentalOpen in IMG/M
3300032516Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0EnvironmentalOpen in IMG/M
3300033816Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005EnvironmentalOpen in IMG/M
3300033981Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011EnvironmentalOpen in IMG/M
3300034061Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028EnvironmentalOpen in IMG/M
3300034072Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-AEnvironmentalOpen in IMG/M
3300034101Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107EnvironmentalOpen in IMG/M
3300034106Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131EnvironmentalOpen in IMG/M
3300034418Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI25128J35275_102518333300002488MarineMASSVPQGQTDVDDWFDLDKYRQAAGVAYDFSKKKMEDAGEQDRKTIGEKGRQQRTSAEQEQSFR
Ga0074649_104581113300005613Saline Water And SedimentMTSSTGEILNADDWFDLDKYREAAGVAYEFSKKKAEDVGEQERQTIGKS
Ga0079301_112812813300006639Deep SubsurfaceMTSSVPAGQTDIDDWFDLDKYRQAAGVAYEFSKKKMETAGEQERETIG
Ga0079301_113692813300006639Deep SubsurfaceMTSSVPAGQTDIDDWFDLDKYRQAAGVAYEFSKKKMETAGEQERETIGKGA
Ga0098074_116676013300006790MarineMTSSVPTGQTDVDDWFDLDKYKQAAEVAYSFSKKKLEDAGTQERETIG
Ga0070749_1028048813300006802AqueousMTSSVPAGQTDTDEWFDLDKYKQAAEVAYSFSKKKMETAGEQERETVGKGAEEQRASAEQGQQ
Ga0070754_1003013263300006810AqueousMSSSVPAGQVDVDDWFDLDKYRQAAGVAYEFSKKKMETAGEQERETIGKGAEESRTS
Ga0075473_1015369913300006875AqueousMTSSVPAGQTDVDDWFDLDKYKQAAEVAYSFSKKKLEDAGTQERETIGKGAQEQRTSAEQGQQFKQ
Ga0070750_1027634313300006916AqueousMTSSVPAGQVDVDDWFDLDKYRQAAGVAYEFSKKKMETGGEQERETIGKGAEEQRTSAEQQQ
Ga0070753_108338613300007346AqueousMSSSVPAGQVDVDDWFDLDKYRQAAGVAYEFSKKKMETAGEQERETIGKGAEESRTSAEQQQQYK
Ga0099851_105576043300007538AqueousMTSSLPSVPAGQTDVDDWFDLDKYKQAAEVAYGFSKQKMEEAGLQERETIG
Ga0099851_125998333300007538AqueousMTTSPASVPAGQTDVDDWFDLNKYKEAAEVAYGFSKKKMEEAGLQERETIGKGATEQ
Ga0099849_116270343300007539AqueousMTSSVPPGQIDVDDWFDLDKYRQAAGVAYEFSKKKMETAGEQERETIGKG
Ga0099847_104398713300007540AqueousMTSSVPEGQIDADDWFDLDKYRQAAGVAYEFSKKKMEESGAQERETIGKGATEQRTSAEQKQRFSEQ
Ga0099848_127223033300007541AqueousMTSSVPTGQTDVDDWFDLDKYKQAAEVAYSFSKKKLEDTGGQERETIGKGAEEQRTSA
Ga0099846_120874233300007542AqueousMASSVPTDQSNVDDWFDLDKYKQAAEVAYSFSKKKLEDTGEQERTTAA
Ga0099846_122234433300007542AqueousMTSSVPAGQVDVDDWFDLDKYRQAAGVAYEFSKKKMETAGEQERETIGKGAEESRTSAEQQQQ
Ga0099846_125249633300007542AqueousMTTSPASVPTGQSDVDDWFDLDKYKQAAEVAYGFSKQKMEEAGLQERETIGKGATEQRTSAEQAQRFKEG
Ga0099850_102867613300007960AqueousMSSSVPIDQSNVDDWFDLDKYKQAAEVAYSFSKKKLEDTGTQERETIGKGAEEQ
Ga0075480_1032533433300008012AqueousMADDNKSVPEGQIDADDWFDLDKYREAAGVAYEFSKKKAEDVGEQERQTIGKGAEEQRTSARQ
Ga0105105_1019337613300009009Freshwater SedimentMTTSPASVPEGQLDVDDWFDLDKYKQAAEVAYGFSKKKMEEAGLQERETIGKGATEQRTSAEQAQQ
Ga0129345_107332133300010297Freshwater To Marine Saline GradientMTSSVPAGQTDVDDWFDLDKYREAAGVAYEFSKKKMEEAGGQERETIGKGAEEQRTSAEQAQRFRQED
Ga0129342_103668653300010299Freshwater To Marine Saline GradientMTSSVPPGQIDVDDWFDLDKYRQAAGVAYEFSKKKMETAGEQERETIGKGAGEQR
Ga0129351_120368113300010300Freshwater To Marine Saline GradientMTSSVPTGQTDVDDWFDLDKYKQAAEVAYSFSKKKLEDTGGQERETIGKGAEEQRTSAEQAQ
Ga0129351_139769033300010300Freshwater To Marine Saline GradientMTSSVPAGQTDVDDWFDLDKYRQAAGVAYEFSKKKMETAGEQERETIGKG
Ga0129333_1005139883300010354Freshwater To Marine Saline GradientMTTSPASVPAGQTDVDDWFDLDKYKQAAEVAYGFSKKKMEEAGLQERETIGKGATEQRTSAEQAQRFKEGD
Ga0129333_1096389413300010354Freshwater To Marine Saline GradientMTSSVPEGQLNVDDWFDLDKYRQAAGVAYEFSKKKMETAGEQERETIGKGAEE
Ga0129333_1114274633300010354Freshwater To Marine Saline GradientMTSSLPSVPAGQTDVDDWFDLDKYKQAAEVAYGFSKQKMEEAGLQERETIGKGATEQRTSAEQAQRFK
Ga0129333_1157870233300010354Freshwater To Marine Saline GradientMTSSLPSVPAGQTDVDDWFDLNKYKQAAEVAYGFSKQKMEEAGLQERETIGKGATEQRTSAE
Ga0129324_1021355633300010368Freshwater To Marine Saline GradientMTSSVPTGQTDVDDWFDLDKYKQAAEVAYSFSKKKLEDTGGQERETIGKGAEEQRTSAEQ
Ga0129336_1032718743300010370Freshwater To Marine Saline GradientMTSSVPAGQTDADDWFDLDKYKQAAEVAYSFSKKKMEDAGTQERETIG
Ga0157627_117413833300012706FreshwaterMTSSVPAGQTDVDDWFDLDKYRQAAGVAYEFSKKKMETAGEQERETIGKGAEEQRGSAEQ
(restricted) Ga0172364_1058456343300013129SedimentMTSSVPSGQTDVDDWFDLDKYRQAAGVAYEFSKKKMETAGEQERETIGKGAE
(restricted) Ga0172373_1053996133300013131FreshwaterMTSSVPAGQVDVDDWFDLDKYRQAAGVAYEFSKKKMETAGEQERETIGKGAEEQRTSATQQQEFK
(restricted) Ga0172373_1082020913300013131FreshwaterMTSSVPAGQTDVDDWFDLDKYRQAAGVAYEFSKKKMETAGEQERETIGKGAEEQR
(restricted) Ga0172372_1073195433300013132FreshwaterMTSSVPAGQVDVDDWFDLDKYRQAAGVAYEFSKKKMETAGEQERETIGKGAEE
Ga0157622_123342433300013310FreshwaterMTSSVPAGQTDVDDWFDLDKYRQAAGVAYEFSKKKMETAGEQERETIGKGAEEQRGSAEQSQRFKQE
Ga0180058_103879933300016699FreshwaterMTSSVPAGQTDVDDWFDLDKYRQAAGVAYEFSKKKMETAGEQERETIGKGAEEQRGSAEQSQRFRQED
Ga0181363_101675633300017707Freshwater LakeMTSSVPAGQTDVDDWFDLDKYRQAAGVAYEFSKKKMETAGEQERETIGKGAEEQ
Ga0181350_114371033300017716Freshwater LakeMTSSVPSGQIDNDDYFDLDKYRQAAGVAFEFSKKKMEEAGGQERETIGKGATEQRTSAEQAQQLKE
Ga0181350_116298833300017716Freshwater LakeMTSSVPAGQTDVDDWFDLDKYKQAAGVAYEFSKKKAEDVGSQERETIGKGAQEQRTSAEQ
Ga0181347_101888353300017722Freshwater LakeMTSSVPPGQIDYDDPFDIDKYRQAAGVAYEFSKKKMEEAGAQERETIGKG
Ga0181352_118373133300017747Freshwater LakeMTSSVPAGQVDVDDWFDLDKYRQAAGVAYEFSKKKMETAGEQERETIGKGAEEQRGSAEQSQRF
Ga0181344_120984413300017754Freshwater LakeMTSSVPAGQTDIDDWFDLDKYRQAAGVAYEFSKKKMETAGEQERETIGKGAGEQRTSAEQSQQFRQ
Ga0181356_123850113300017761Freshwater LakeMTSSVPAGQTDVDDWFDLDKYKQAAGVAYEFSKKKAEDVGSQERETIGKGAQEQF
Ga0181357_129234733300017777Freshwater LakeMTSSVPPGQIDNDDYFDLDKYRQAAGVAFEFSKKKMEEAGGQERETIGKGATEQRTSAEQAQQ
Ga0181348_107987843300017784Freshwater LakeMASSVPPGQIDNDDYFDLDKYRQAAGVAFEFSKKKMEEAGGQERETIGKGATEQRTSAEQAQQLKEK
Ga0181355_113644533300017785Freshwater LakeMTSSVPSGQIDNDDYFDLDKYRQAAGVAFEFSKKKMEEAGGQERETIGKGATEQRTSAEQAQQ
Ga0181355_132796333300017785Freshwater LakeMSGSVPVGQIDNDDYFDLDKYRQAAGVAFEFSKKKMEEAGGQERATIGKGATEQRTSAEQTQQ
Ga0169931_1083474413300017788FreshwaterMTSSVPAGQTDVDDWFDLDKYRQAAGVAYEFSKKKMETAGEQERETIGKGA
Ga0181590_1045924233300017967Salt MarshMSSSVPTGQVDADDWFDLDKYRQAAGVAYEFSKKKMETAGEQERETIGKGAEE
Ga0181590_1080930733300017967Salt MarshMTSSVPAGQVDVDDWFDLDKYRQAAGVAYEFSKKKMETGGEQERETIGKGAEEQRTSAEQQQQ
Ga0180431_1026382513300017987Hypersaline Lake SedimentMTSSVPAGQTDVDDWFDLDKYREAAGVAYEFSKKKMEEAGGQERETIGKGAE
Ga0180431_1027833833300017987Hypersaline Lake SedimentMTSSVPAGQTDIDDWFDLDKYREAAGVAYEFSKKKMEEAGGQERETIGKGAE
Ga0188851_103740113300018682Freshwater LakeMTNSVPQGQVDADDWFDLDKYRQAAGVAYEFSKKKMEESGAQERETIGKGATEQRTSAEQKQRFS
Ga0193972_102635233300019717SedimentMTSSVPAGQVDVDDWFDLDKYRQAAGVAYEFSKKKMETAGEQERETIGKGAEEQRTSAEQQQQFREK
Ga0194113_1107467033300020074Freshwater LakeMTTSVPAGQTNVDDWFDLDKYKQAAEVAYGFSKKKMEEAGLQERETIGKGATEQRTSAE
Ga0194112_1012401463300020109Freshwater LakeMTRSVPAGQIDTDDYFDLDKYRQAAGVAYEFSKKKMETAGEQERETIGRGAQEQRTSAEQAQRFKE
Ga0211528_1011816723300020417MarineMVVGAKPPSAGQVGMTSSTPPAPVPPGQQDDDDWFDLDKYRQAAGVAYEFGKKREEDRGKQERETISRGATEQRASAKQQQ
Ga0211664_1047365813300020455MarineMASSVPTGQSDVDDWFDIDKYKQAAGVAYEFSKKKMEDAGEQDRQTIGKGA
Ga0213864_1061303113300021379SeawaterMTSSVPAGQTDVDDWFDLDKYKQAAGVAYEFSKKKMESAGEQERETIGRGAT
Ga0212025_106058933300022057AqueousMTSSVPAGQTDVDDWFDLDKYRQAAGVAYEFSKKKMETAGEQERETIGKGAGEQRASAI
Ga0212025_107552913300022057AqueousMTSSVPAGQVDVDDWFDLDKYRQAAGVAYEFSKKKMETAGGEERETIGKGAE
Ga0181353_104946733300022179Freshwater LakeMTSSVPAGQTDVDDWFDLDKYRQAAGVAYEFSKKKMETAGEQERETI
Ga0181354_102052913300022190Freshwater LakeMTSSVPSGQIDNDDYFDLDKYRQAAGVAFEFSKKKMEEAGGQERETIGKGATEQRTSAEQAQ
Ga0196901_117478113300022200AqueousMTSTPATPTNPDDWFDLEKYKQAAGVAYEFSKKKAETAGEQERETIGKG
Ga0181351_109065143300022407Freshwater LakeMASSVPPGQIDNDDYFDLDKYRQAAGVAFEFSKKKMEEAGGQERETIGK
Ga0255781_1043127233300022934Salt MarshMTSSVPAGQTDVDDWFDLDKYRQAAGVAYEFSKKKMETAGEQERETIGKGAGEQR
Ga0256340_116187633300024865FreshwaterMSSSIPSGQTDVDDWFDLDKYRQAAGVAYEFSKKKMETAGEQERETIGKGAQEQ
Ga0208161_102770553300025646AqueousMTSSVPTGQTNVDDWFDLDKYKQAAEVAYSFSKKKLEDTGGQERETIGKGAEEQRTSAEQ
Ga0208160_103924343300025647AqueousMTSSVPTGQTDVDDWFDLDKYKQAAEVAYSFSKKKLEDTGGQERETIGKGA
Ga0208795_113810233300025655AqueousMTSSVPAGQTDVDDWFDLDKYREAAGVAYEFSKKKMEEAGGQERETIGKGAEEQRTSAEQTQRFR
Ga0208795_116343233300025655AqueousMTTSPASVPAGQTDVDDWFDLNKYKQAAEVAYGFSKQKMEEAGLQERETIGKGA
Ga0208899_120169013300025759AqueousMPGSVPTGQTDVDDWFDLDKYKQAAEVAYGFSKKKLEDTGGQERETIGKGAEEQRTSAEQSQRFKQ
Ga0208427_115561413300025771AqueousMTSSVPAGQVDVDDWFDLDKYRQAAGVAYEFSKKKMETGGEQERETIGKGAEEQRTSAEQQQEF
Ga0208547_117019033300025828AqueousMTSSVPTGQVDVDDWFDLDKYRQAAGVAYEFSKKKMETGGEQERETIGKGAEEQRTSAEQQQQFKEK
Ga0208644_109912013300025889AqueousMSSSVPAGQVDVDDWFDLDKYRQAAGVAYEFSKKKMETAGEQERETIGKGAEESRTSAE
Ga0209867_100360713300027393SandMTSSVPQGQIDSDDWFDLDKYRQAAGVAYEFSKKKMEESGAQERETIGKGATEQRTSA
Ga0209617_1015674713300027720Freshwater And SedimentMIDNNSLANSADTDDWFDLDKYRQAAGVAYEFSKKKMEESGAQERETIGKGATEQR
Ga0209246_1014656313300027785Freshwater LakeMAANPPIDYNAEDDPFDIDKYRQAAGVAYEFSKKKMEEAGGQERETIGKGATEQRTSAEQAQQLKEK
Ga0209635_1070982733300027888Marine SedimentMTSSVPAGQVDVDDWFDLDKYRQAAGVAYEFSKKKMETGGEQERETIGKGAEEQRTSAE
Ga0209668_1087857613300027899Freshwater Lake SedimentMTSSIQGFPSSVPSGQTDVDDWFDLDKYRQAAGVAYEFSKQKMETAGEQERETIGKGAEEQRA
Ga0209536_10315379413300027917Marine SedimentMTSTPATPTDPDDWFDLEKYKQAAGVAYEFSKKKAETAGEQERETIARAAQEK
Ga0307379_1038651513300031565SoilMSEERELIDPDDWFQLDKYRQAAGVAYEFSKKKMEESGAQERETIGKGA
Ga0307378_1090382213300031566SoilMSEERELIDPDDWFQLDKYRQAAGVAYEFSKKKMEESGAQERETIGKGATEQRTSAEQKQ
Ga0307375_1048672233300031669SoilMTSSVPEGQIDADDWFDLDKYRQAAGVAYEFSKKKMEESGAQERETIGKGA
Ga0307377_1109785813300031673SoilMTSSVPEGQIDADDWFDLDKYRQAAGVAYEFSKKKMEESGAQERETIGKG
Ga0307377_1117929613300031673SoilMTSSVPPGQIDYDDPFDIDKYRQAAGVAYEFSKKKMETAGEQERETIGKGATESRT
Ga0315294_1157071413300031952SedimentMTSSFADPSVPAGQSGADDWFDLDKYRQAAGVAYEFSKKKMEEAGAQERETIGKGAEESRTSG
Ga0315315_1170864913300032073SeawaterMATSNTVPPGQTDVDDWFDLDKYKQAAGVAYDFSKKKMEAAGEQDRKTIGEKGTQQRTSARQEQEFRQ
Ga0315903_1117794313300032116FreshwaterMSSSVPAGQSSADDWFDLDKYKQAAEVAYSFSKKKMEDAGTQERETIGKGAQEQ
Ga0315277_1113946833300032118SedimentMTSSVPAGQSNVDDWFDLDKYKQAAGVAYEFSKKKAEDVGSQERETIGKGAQEQRTSAE
Ga0315273_1028180753300032516SedimentMTSSVPAGQIDADDWFDLDKYRQAAGVAYDFSKQKMETAGAQERETIGKGAAESRASAEQQQ
Ga0334980_0006342_5114_52603300033816FreshwaterMTSSVPSGQTDVDDWFDLDKYRQAAGVAYEFSKKKMETAGEQERETIGK
Ga0334982_0029138_3006_31583300033981FreshwaterMTSSVPSGQTDVDDWFDLDKYRQAAGVAYEFSKKKMETAGEQERETIGKGA
Ga0334987_0061988_2833_30333300034061FreshwaterMTSSFADVPVGQSSEDDWFDLDKYRQAAGVAYEFSKKKMETAGEQERETIGKGATEQRTSAEQGQQF
Ga0310127_258329_476_6133300034072Fracking WaterMTSSVPAGQTDIDDWFDLDKYRQAAGVAYEFSKKKMETAGEQERET
Ga0335027_0061682_2797_29823300034101FreshwaterMTSSVPPGQTDVDDWFDLDLYRQAAGVAYEFSKKKMETAGEQERETIGKGAEEQRSSAEQGQ
Ga0335036_0013780_2_1933300034106FreshwaterMTSSVPAGQTDVDDWFDLDKYRQAAGVAYEFSKKKMETAGEQERETIGKGAEEQRGSAEQSQRF
Ga0348337_150627_2_1993300034418AqueousMTSSVPTGQTDVDDWFDLDKYKQAAEVAYSFSKKKLEDTGGQERETIGKGAEEQRTSAEQAQRFKQ

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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