NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F105095

Metagenome Family F105095

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F105095
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 64 residues
Representative Sequence MSYQDEYPTCYNLKPVTLEKPSPSITDVELAALRGVDLAERVAEPINRFSVARAAIKLSAHIARKFR
Number of Associated Samples 61
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 87.00 %
% of genes near scaffold ends (potentially truncated) 45.00 %
% of genes from short scaffolds (< 2000 bps) 77.00 %
Associated GOLD sequencing projects 43
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (87.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(68.000 % of family members)
Environment Ontology (ENVO) Unclassified
(75.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(89.000 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 49.25%    β-sheet: 0.00%    Coil/Unstructured: 50.75%
Feature Viewer
Powered by Feature Viewer


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF01381HTH_3 18.00
PF03837RecT 15.00
PF01695IstB_IS21 7.00
PF00436SSB 3.00
PF13518HTH_28 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG3723Recombinational DNA repair protein RecTReplication, recombination and repair [L] 15.00
COG1484DNA replication protein DnaCReplication, recombination and repair [L] 7.00
COG0629Single-stranded DNA-binding proteinReplication, recombination and repair [L] 3.00
COG2965Primosomal replication protein NReplication, recombination and repair [L] 3.00


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A87.00 %
All OrganismsrootAll Organisms13.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000116|DelMOSpr2010_c10022185Not Available3079Open in IMG/M
3300000116|DelMOSpr2010_c10088398Not Available1204Open in IMG/M
3300000117|DelMOWin2010_c10210034Not Available593Open in IMG/M
3300005512|Ga0074648_1000894Not Available34464Open in IMG/M
3300005512|Ga0074648_1137519Not Available767Open in IMG/M
3300006025|Ga0075474_10042040Not Available1569Open in IMG/M
3300006025|Ga0075474_10083105Not Available1048Open in IMG/M
3300006026|Ga0075478_10092467Not Available969Open in IMG/M
3300006027|Ga0075462_10047051All Organisms → cellular organisms → Bacteria1374Open in IMG/M
3300006027|Ga0075462_10087649Not Available973Open in IMG/M
3300006027|Ga0075462_10233282Not Available548Open in IMG/M
3300006637|Ga0075461_10003932All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium4897Open in IMG/M
3300006637|Ga0075461_10009278Not Available3260Open in IMG/M
3300006637|Ga0075461_10018696Not Available2288Open in IMG/M
3300006637|Ga0075461_10048551Not Available1379Open in IMG/M
3300006637|Ga0075461_10064950Not Available1172Open in IMG/M
3300006802|Ga0070749_10102964Not Available1687Open in IMG/M
3300006802|Ga0070749_10119598Not Available1547Open in IMG/M
3300006802|Ga0070749_10383745Not Available777Open in IMG/M
3300006802|Ga0070749_10438366Not Available717Open in IMG/M
3300006810|Ga0070754_10075927Not Available1706Open in IMG/M
3300006810|Ga0070754_10292761Not Available732Open in IMG/M
3300006867|Ga0075476_10189721Not Available753Open in IMG/M
3300006867|Ga0075476_10197190Not Available735Open in IMG/M
3300006868|Ga0075481_10195496Not Available725Open in IMG/M
3300006869|Ga0075477_10039077Not Available2146Open in IMG/M
3300006869|Ga0075477_10198050Not Available823Open in IMG/M
3300006870|Ga0075479_10438836Not Available501Open in IMG/M
3300006874|Ga0075475_10321755Not Available634Open in IMG/M
3300006874|Ga0075475_10344432Not Available607Open in IMG/M
3300006916|Ga0070750_10259425Not Available752Open in IMG/M
3300006919|Ga0070746_10021076All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium3579Open in IMG/M
3300006919|Ga0070746_10468864Not Available557Open in IMG/M
3300006919|Ga0070746_10548842Not Available501Open in IMG/M
3300007345|Ga0070752_1180601Not Available851Open in IMG/M
3300007346|Ga0070753_1164272Not Available836Open in IMG/M
3300007539|Ga0099849_1260817Not Available635Open in IMG/M
3300007539|Ga0099849_1321110Not Available555Open in IMG/M
3300009124|Ga0118687_10016214Not Available2441Open in IMG/M
3300010296|Ga0129348_1071974Not Available1233Open in IMG/M
3300010299|Ga0129342_1062540Not Available1439Open in IMG/M
3300010300|Ga0129351_1348478Not Available556Open in IMG/M
3300017951|Ga0181577_10050511Not Available2960Open in IMG/M
3300017967|Ga0181590_10151591Not Available1774Open in IMG/M
3300017967|Ga0181590_11006172Not Available543Open in IMG/M
3300018421|Ga0181592_10199360Not Available1497Open in IMG/M
3300019732|Ga0194014_1020609Not Available824Open in IMG/M
3300019751|Ga0194029_1070281Not Available594Open in IMG/M
3300019753|Ga0194010_1059762Not Available647Open in IMG/M
3300019756|Ga0194023_1110516Not Available557Open in IMG/M
3300021356|Ga0213858_10002220All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.9267Open in IMG/M
3300021356|Ga0213858_10033425Not Available2477Open in IMG/M
3300021356|Ga0213858_10167989Not Available1070Open in IMG/M
3300021364|Ga0213859_10531992Not Available508Open in IMG/M
3300021368|Ga0213860_10407769Not Available588Open in IMG/M
3300021957|Ga0222717_10086389Not Available1976Open in IMG/M
3300021958|Ga0222718_10185237Not Available1148Open in IMG/M
3300021958|Ga0222718_10241831Not Available963Open in IMG/M
3300021958|Ga0222718_10375212Not Available717Open in IMG/M
3300021959|Ga0222716_10108740All Organisms → Viruses → Predicted Viral1863Open in IMG/M
3300021959|Ga0222716_10136210Not Available1618Open in IMG/M
3300021960|Ga0222715_10076210Not Available2224Open in IMG/M
3300021960|Ga0222715_10089505All Organisms → Viruses → Predicted Viral2012Open in IMG/M
3300021960|Ga0222715_10173677Not Available1314Open in IMG/M
3300022057|Ga0212025_1082585Not Available552Open in IMG/M
3300022067|Ga0196895_1005118Not Available1383Open in IMG/M
3300022068|Ga0212021_1035075Not Available991Open in IMG/M
3300022158|Ga0196897_1008211Not Available1298Open in IMG/M
3300022167|Ga0212020_1023203Not Available1014Open in IMG/M
3300022168|Ga0212027_1044111Not Available569Open in IMG/M
3300022176|Ga0212031_1011768Not Available1257Open in IMG/M
3300022183|Ga0196891_1035502Not Available928Open in IMG/M
3300022183|Ga0196891_1084033Not Available563Open in IMG/M
3300022187|Ga0196899_1011474All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium3479Open in IMG/M
3300025151|Ga0209645_1009974Not Available3851Open in IMG/M
3300025646|Ga0208161_1018953Not Available2629Open in IMG/M
3300025671|Ga0208898_1005365All Organisms → cellular organisms → Bacteria → Proteobacteria7195Open in IMG/M
3300025671|Ga0208898_1055969Not Available1398Open in IMG/M
3300025671|Ga0208898_1102646Not Available865Open in IMG/M
3300025671|Ga0208898_1105824Not Available844Open in IMG/M
3300025687|Ga0208019_1013100All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium3450Open in IMG/M
3300025759|Ga0208899_1008989All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon5709Open in IMG/M
3300025769|Ga0208767_1187872Not Available708Open in IMG/M
3300025769|Ga0208767_1258358Not Available538Open in IMG/M
3300025771|Ga0208427_1049216Not Available1559Open in IMG/M
3300025815|Ga0208785_1095671Not Available740Open in IMG/M
3300025818|Ga0208542_1025689Not Available1954Open in IMG/M
3300025818|Ga0208542_1084370Not Available934Open in IMG/M
3300025818|Ga0208542_1092613Not Available879Open in IMG/M
3300025828|Ga0208547_1078452Not Available1061Open in IMG/M
3300025840|Ga0208917_1084265Not Available1188Open in IMG/M
3300025840|Ga0208917_1239639Not Available586Open in IMG/M
3300025889|Ga0208644_1016590All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium4779Open in IMG/M
3300025889|Ga0208644_1053347Not Available2225Open in IMG/M
3300025889|Ga0208644_1079742Not Available1680Open in IMG/M
3300025889|Ga0208644_1134953Not Available1155Open in IMG/M
3300034374|Ga0348335_006133All Organisms → cellular organisms → Bacteria → Proteobacteria7296Open in IMG/M
3300034374|Ga0348335_012236All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium4601Open in IMG/M
3300034375|Ga0348336_190152Not Available560Open in IMG/M
3300034418|Ga0348337_111388Not Available863Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous68.00%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water9.00%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater5.00%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh4.00%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient3.00%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine3.00%
SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment2.00%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater2.00%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment2.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine1.00%
SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment1.00%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300005512Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_waterEnvironmentalOpen in IMG/M
3300006025Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006026Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006027Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300006637Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNAEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006867Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300006868Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300006869Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300006870Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNAEnvironmentalOpen in IMG/M
3300006874Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNAEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300007345Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30EnvironmentalOpen in IMG/M
3300007346Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31EnvironmentalOpen in IMG/M
3300007539Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaGEnvironmentalOpen in IMG/M
3300009124Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsfEnvironmentalOpen in IMG/M
3300010296Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNAEnvironmentalOpen in IMG/M
3300010299Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_DNAEnvironmentalOpen in IMG/M
3300010300Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNAEnvironmentalOpen in IMG/M
3300017951Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017967Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018421Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019732Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRC_0-1_MGEnvironmentalOpen in IMG/M
3300019751Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MGEnvironmentalOpen in IMG/M
3300019753Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLC_6-7_MGEnvironmentalOpen in IMG/M
3300019756Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW6Sep16_MGEnvironmentalOpen in IMG/M
3300021356Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245EnvironmentalOpen in IMG/M
3300021364Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304EnvironmentalOpen in IMG/M
3300021368Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300022057Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v2)EnvironmentalOpen in IMG/M
3300022067Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v3)EnvironmentalOpen in IMG/M
3300022068Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v2)EnvironmentalOpen in IMG/M
3300022158Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v3)EnvironmentalOpen in IMG/M
3300022167Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v2)EnvironmentalOpen in IMG/M
3300022168Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v2)EnvironmentalOpen in IMG/M
3300022176Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022183Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v3)EnvironmentalOpen in IMG/M
3300022187Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)EnvironmentalOpen in IMG/M
3300025151Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)EnvironmentalOpen in IMG/M
3300025646Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025671Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)EnvironmentalOpen in IMG/M
3300025687Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025759Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)EnvironmentalOpen in IMG/M
3300025769Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)EnvironmentalOpen in IMG/M
3300025771Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025815Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025818Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025828Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025840Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025889Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)EnvironmentalOpen in IMG/M
3300034374Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)EnvironmentalOpen in IMG/M
3300034375Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)EnvironmentalOpen in IMG/M
3300034418Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
DelMOSpr2010_1002218543300000116MarineMSYQDEYPTCYNLKPVTLEKPLPSITDVELAALRGVDLAERVAEPINRFSVARALITASAHIARKLRDAT*
DelMOSpr2010_1008839833300000116MarineMCQSDLYPTEYNLKPVTLEKRPSITDVEVAALKGVDLAERAAEPVNRFSIARGVIRLSAHIARKFR*
DelMOWin2010_1021003413300000117MarineMSYQDEYPTCYNLKPVTLEKPSPSITDVELAALRGVDLAERVAEPVNRFSVARAAIKLSAHIARKFR*
Ga0074648_1000894163300005512Saline Water And SedimentMSITDPQPTCYDLKPVVLTVEPQAPSITDVELAALRGVDIAENLAEPINRFSVARGVIKLSAYVARRFR*
Ga0074648_113751923300005512Saline Water And SedimentMCITDPQPTSYDLKPVVLTVEPQAPSITDVELAALRGVDIAENLAEPINRFSVARGAIRLSAYVARKFRR*
Ga0075474_1004204033300006025AqueousMCQSDLYPTEYNLKPVTLEKPRPSITDVEVAALKGVDLAERAAEPVNRYSIARGVIRLSAHIARKFR*
Ga0075474_1008310533300006025AqueousMCQSDLYPTEYNLKPVTLEKKPSITDVEVAALKGVDLAERVAEPVNRYSIARGVIRLSAHIARKFR*
Ga0075478_1009246733300006026AqueousCQSDLYPTEYNLKPVTLEKKPSITDVEVAALKGVDLAERVAEPVNRYSIARGVIRLSAHIARKFR*
Ga0075462_1004705133300006027AqueousMCITDPQPTCYDLKPVKLTLEPQTPSITDVELAALRGVDIAERVAEPINRFSVARGAIRLSAYVARKLRR*
Ga0075462_1008764913300006027AqueousMCQSDLYPTEYNLKPVTLEKKPSITDVEVAALKGVDLAERAAEPVNRYSIARGVIRLSAHIARK
Ga0075462_1023328213300006027AqueousMSYQDEYPTCYNLKPVTLEKPSPSITDVELAALRGVDLAERVAEPVNRFSLARAAIKLSAHIA
Ga0075461_1000393223300006637AqueousMSYQDEYPTCYNLKPVTLEKPSPSITDVELAALRGVDLAERVAEPVNRFSLARAAIKLSAHIARKLR*
Ga0075461_1000927833300006637AqueousMCQSDLYPTEYNLKPVTLEKKPSITDVEVAALKGVDLAERAAEPVNRYSIARGVIRLSAHIARKFR*
Ga0075461_1001869623300006637AqueousMSYQDEYPTCYNLRPVTLEKPSPSITDVELAALRGVDLAERVAEPVNRFSVARAAIKLSAHIARKFR*
Ga0075461_1004855123300006637AqueousMCQSDLYPTEYDLKPIVLNQSTSLSITEMEIQALKGIDLAERITDPINRFSVARGVIKLSAHVARKFRNATR*
Ga0075461_1006495033300006637AqueousMSYQDEYPTCYNLKPVTLEKPSPSITDVELAALRGVDLAERVAEPINRFSVARALITASAHIARKLRDAT*
Ga0070749_1010296413300006802AqueousMSYQDEYPTCYNLKPVTLEKPSPSITDVELAALRGVDLAERVAEPVNRFS
Ga0070749_1011959833300006802AqueousMSYQDEYPTCYNLKPVTLEKPSPSITDVELAALRGVDLAERVAEPINRFSVARAAIKLSAHIARKFR*
Ga0070749_1038374513300006802AqueousMCQSDLYPTCYDLKPIVLDEPTSLSITEMEIQALKGIDLAERITDPINRFSVARGLVRLSAHVARKFRNASR*
Ga0070749_1043836613300006802AqueousMCQSDLYPTEYNLKPVTLEKRPSITDVEVAALKGVDLAERAAEPVNRYSIARGVIRLSAHIARKF
Ga0070754_1007592743300006810AqueousMSYQDEYPTCYDLKPVTLEKPLPSITDVELAALRGVDLAERVAEPINRFSVARA
Ga0070754_1029276113300006810AqueousMSYQDEYPTCYNLKPVTLEKPLPSITDVELAALRGVDLAERVAEPINRFSVAR
Ga0075476_1018972133300006867AqueousMSYQDEYPTCYDLKPVTLEKPLPSITDVELAALRGVDLAERVAEPINRFSVARAAIKLSAHI
Ga0075476_1019719013300006867AqueousMSYQDEYPTCYDLKPVTLEKPSPSITDVELAALRGVDLAERVAEPINRFSVAR
Ga0075481_1019549623300006868AqueousMSYQDEYPTCYDLKPVTLEKPSPSITDVELAALRGVDLAERVAEPINRFS
Ga0075477_1003907723300006869AqueousMSYQDEYPTCYDLKPVTLEKPSPSITDVELAALRGVDLAERVAEPINRFSVARALITASAHIARKLRDAT*
Ga0075477_1019805033300006869AqueousMSYQDEYPTCYNLKPVTLEKPLPSITDVELAALRGVDLAERVAEPINRFSVARALITA
Ga0075479_1043883623300006870AqueousMCQSDLYPTEYNLKPVTLEKKPSITDVEVAALKGVDLAERAAEPVNRFSIARGVIRLSAHIARKFR*
Ga0075475_1032175513300006874AqueousMSYQDEYPTCYNLKPVTLEKPLPSITDVELAALRGVDLAERVAEPINRFSVARAAIKLSAHIARKFR*
Ga0075475_1034443233300006874AqueousMCQSDLYPTEYNLKPVTLEKPRPSITDVEVAALKGVDLAERAAEPVNRYSIARGVIRLSAHIAR
Ga0070750_1025942513300006916AqueousMCITDPQPTCYGLEPVKLTVEPQTPSITDVELAALRGVDIAERVAEPINRFSVARGAIRLSAYVARKLRR*
Ga0070746_1002107613300006919AqueousMSYQDEYPTCYNLKPVTLEKPSPSITDVELAALRGVDLAERVAEPINRFSVARALIT
Ga0070746_1046886413300006919AqueousPSRGGQSMSYQDEYPTCYNLRPVTLEKPSPSITDVELAALRGVDLAGRVAEPVNRFSVARAAIKLSAHIARKFR*
Ga0070746_1054884213300006919AqueousMCITDPQPTCYGLEPVKLTVEPQTPSITDVELAALRGVDIAERVAEPINRFSVARGAI
Ga0070752_118060113300007345AqueousMSYQDEYPTCYNLKPVTLEKPLPSITDVELAALRGVDLAERVAEPINRFSVARALITAS
Ga0070753_116427233300007346AqueousMSYQDEYPTCYNLKPVTLEKPLPSITDVELAALRGVDLAERVAEPINRFSVARA
Ga0099849_126081713300007539AqueousQSDLYPTEYNLKPVTLEKKPSITDVEVAALKGVDLAERAAEPVNRFSIARGVIRLSAHIARKFR*
Ga0099849_132111023300007539AqueousMCQSDLYPTEYNLKPVTLEKPRPSITDVEVAALKGVDLAERASEPVNRYSIARGVIRLSAHIARKFR*
Ga0118687_1001621433300009124SedimentMCQSDLYPTEYNLKPVTLENKPSITDVELAALKGVDLAERAAEPVNRFSIARGVIRLSAHIARKFR*
Ga0129348_107197433300010296Freshwater To Marine Saline GradientMCQSDLYPTEYNLKPVTLEKKPSITDVEVAALKGVDLAERAAEPVNRYSIARGVIRLSAHIARKF
Ga0129342_106254033300010299Freshwater To Marine Saline GradientMCQSDLYPTEYNLKPVTLEKRPSITDVEVAALKGVDLAERASEPVNRYSIARGVIRLSAHIARKFR*
Ga0129351_134847823300010300Freshwater To Marine Saline GradientMCITDPQPTCYDLQPVKLTVEPQAPSITDVELAALHVVDIAERVAEPVNRFSVARSVIKLSAYVARRFR*
Ga0181577_1005051123300017951Salt MarshMSYQDEYPTCYNLRPVTLEKPSPSITDVELAALRGVDLAERVAEPVNRFSVARAAIKLSAHIARKFR
Ga0181590_1015159123300017967Salt MarshMSYQDEYPTCYNLKPVTLEKPSPSITDVELAALRGVDLAERVAEPINRFSVARAAIKLSAHIARKFR
Ga0181590_1100617223300017967Salt MarshMCQSDLYPTEYNLKPVTLEKRPSITDVEVAALKGVDLAERAAEPVNRYSIARGVIRLSAHIARKFR
Ga0181592_1019936033300018421Salt MarshMCQSDLYPTEYNLKPVTLEKKPSITDVEVAALKGVDLAERAAEPVNRFSIARGVIRLSAHIARKFR
Ga0194014_102060923300019732SedimentMCQSDLYPTEYNLKPVTLEKPRPSITDVEVAALKGVDLAERAAEPVNRYSIARGVIRLSAHIARKFR
Ga0194029_107028123300019751FreshwaterMCQSDLYPTEYNLKPVTLEKKPSITDIEVAALKGVDLAERAAEPVNRYSIARGVIRLSAHIARKFR
Ga0194010_105976213300019753SedimentMCQSDLTEYNLKPVTLEKPRPSITDVEVAALKGIDLAERAAEPVNRFSIARGVIRLSAHIARKFR
Ga0194023_111051613300019756FreshwaterMCQSDLYPTEYNLKPVTLEKKPSITDVEVAALRGVDLAERAAEPVNRFSIARGVIRLSAHIARKFR
Ga0213858_1000222053300021356SeawaterMCVTDQDPTCYDLKPVKLTVEPQTPSITDVELAALRGVDIAERVAEPINRFSVARGAIRLSAYVARKFRR
Ga0213858_1003342533300021356SeawaterMCITDPQPTCYGLEPVKLTVEPQTPSITDVELAALRGVDIAERVAEPINRFSVARSVIKLSAYVARKFR
Ga0213858_1016798923300021356SeawaterMCQSDLYPTEYNLKPVTLEKPRPSITDVEVAALKGVDLAERAAEPVNRFSIARGVIRLSAHIARKFR
Ga0213859_1053199213300021364SeawaterGLEPVKLTIEPQTPSITDVELAALRGVDIAERVAEPINRFSVARGAIRLSAYVARKFRR
Ga0213860_1040776913300021368SeawaterMCITDPQPTCYGLEPVKLTVEPQTPSITDVELAALRGVDIAERVAEPINRFSVARGAIRLSAYVARKFRR
Ga0222717_1008638933300021957Estuarine WaterMSYQDEYPTCYNLKPVTLEKPSITDVDLTASILATRVANMRYEKPSITDVELAALRGVDLAERVAEPVNRFSVARAAIKLSAHTARKFR
Ga0222718_1018523713300021958Estuarine WaterMSYQDEYPTCYNLRPVTLEKPSPSITDVELAALRGVDLAERVAEPVNRFSVARAAIKLSAHTARKFR
Ga0222718_1024183123300021958Estuarine WaterMCQSDLYPTEYNLKPVTLEKRPSITDVEVAALKGVDLAERAAEPVNRFSIARGVIRLSAHIARKFR
Ga0222718_1037521213300021958Estuarine WaterMCQSDLYPTEYNLKPVTLEKKPSITDVEVAALKGVDLAERAAEPVNRYSIARGVIRLSAHIARKFR
Ga0222716_1010874043300021959Estuarine WaterMSYQDEYPTCYNLKPVTLEKPSPSITDVELAALRGVDLAERVAEPVNRFSVARAAIKLSAHTARKFR
Ga0222716_1013621023300021959Estuarine WaterMSYQDEYPTCYNLKPVTLEKPSPSITDVELAALRGVDLAERVAEPVNRFSVARAAIKLSAHIARKFR
Ga0222715_1007621043300021960Estuarine WaterMSYQDEYPTCYNLKPVTLEKPSITDVDLTASILATRVANMRYEKPSITDVELAALRGVDLAERVAEPVNRFSVARAAIKLSAHTAR
Ga0222715_1008950513300021960Estuarine WaterMSYQDEYPTCYNLKPVTLEKPSPSITDVELAALRGVDLAERVAEPVNRFSVARA
Ga0222715_1017367723300021960Estuarine WaterMCQSDLYPTCYDLKPVVLTAESQAPSITDVELAALKGVDLAERVAEPVNRFSIARGVIRLSAHIARKFR
Ga0212025_108258523300022057AqueousMSYQDEYPTCYDLKPVTLEKPLPSITDVELAALRGVDLAERVAEPINRFSVARALITASAHIARKLRDAT
Ga0196895_100511833300022067AqueousMCQSDLYPTEYNLKPVTLEKKPSITDVEVAALKGVDLAERVAEPVNRYSIARGVIRLSAHIARKFR
Ga0212021_103507533300022068AqueousMSYQDEYPTCYNLKPVTLEKPSPSITDVELAALRGVDLAERVAEPINRFSVARAAIKLSAHIARKLR
Ga0196897_100821123300022158AqueousMSYQDEYPTCYDLKPVTLEKPSPSITDVELAALRGVDLAERVAEPINRFSVARALITASAHIARKLRDAT
Ga0212020_102320333300022167AqueousMSYQDEYPTCYNLKPVTLEKPSPSITDVELAALRGVDLAERVAEPVNRF
Ga0212027_104411113300022168AqueousGQSMSYQDEYPTCYDLKPVTLEKPLPSITDVELAALRGVDLAERVAEPINRFSVARALITASAHIARKLRDAT
Ga0212031_101176813300022176AqueousMSYQDEYPTCYNLKPVTLEKPLPSITDVELAALRGVDLAERVAEPINRFSVARALITASAHIAR
Ga0196891_103550233300022183AqueousMSYQDEYPTCYNLKPVTLEKPSPSITDVELAALRGVDLAERVAEPVNRFSLARAAIKLSAHIARKLR
Ga0196891_108403313300022183AqueousQSDLYPTEYNLKPVTLEKPRPSITDVEVAALKGVDLAERASEPVNRYSIARGVIRLSAHIARKFR
Ga0196899_101147423300022187AqueousMSYQDEYPTCYNLKPVTLEKPLPSITDVELAALRGVDLAERVAEPINRFSVARALITASAHIARKLRDAT
Ga0209645_100997463300025151MarineMCITDPQPTCYDLKPVKLTLEPQAPSITDVELAALRGVDIAENLAEPINRFSVARSVIKLSAYVARKFR
Ga0208161_101895313300025646AqueousDEYPTCYNLKPVTLEKPSPSITDVELAALRGVDLAERVAEPVNRFSVARAAIKLSAHIARKFR
Ga0208898_1005365113300025671AqueousMSYQDEYPTCYDLKPVTLEKPLPSITDVELAALRGVDLAERVAEPINRFSVARAA
Ga0208898_105596933300025671AqueousMCQSDLYPTCYDLKPIVLDEPTSLSITEMEIQALKGIDLAERITDPINRFSVARGLVRLSAHVARKFRNASR
Ga0208898_110264633300025671AqueousMCQSDLYPTEYNLKPVTLEKRPSITDVEVAALKGVDLAERAAEPVNRYSIARGV
Ga0208898_110582433300025671AqueousMSYQDEYPTCYNLKPVTLEKPLPSITDVELAALRGVDLAERVAEPINRFSVARAA
Ga0208019_101310073300025687AqueousMSYQDEYPTCYNLKPVTLEKPSPSITDVELAALRGVDLAERVAEPINRFSV
Ga0208899_100898993300025759AqueousMCITDPQPTCYDLKPVKLTLEPQTPSITDVELAALRGVDIAERVAEPINRFSVARGAIRLSAYVARKLRR
Ga0208767_118787223300025769AqueousLKPVTLEKPSPSITDVELAALRGVDLAERVAEPINRFSVARALITASAHIARKLRDAT
Ga0208767_125835813300025769AqueousMSYQDEYPTCYNLKPVTLEKPSPSITDVELAALRGVDLAERVAEPINRFSVARAAIKLSAHIAR
Ga0208427_104921613300025771AqueousMSYQDEYPTCYDLKPVTLEKPLPSITDVELAALRGVDLAERVAEPINR
Ga0208785_109567123300025815AqueousMSYQDEYPTCYNLKPVTLEKPLPSITDVELAALRGVDLAERVAEPINRFSVARAAIKLSAHIARKFR
Ga0208542_102568943300025818AqueousMCQSDLYPTEYDLKPIVLNQSTSLSITEMEIQALKGIDLAERITDPINRFSVARGVIKLSAHVARKFRNATR
Ga0208542_108437013300025818AqueousLKPVTLEKPSPSITDVELAALRGVDLAERVAEPINRFSVARAAIKLSAHIARKFR
Ga0208542_109261313300025818AqueousMSYQDEYPTCYNLKPVTLEKPLPSITDVELAALRGVDLAERVAEPINRFSVARAAIKLSAHIA
Ga0208547_107845233300025828AqueousMSYQDEYPTCYDLKPVTLEKPSPSITDVELAALRGVDLAERVAEPINRFSVARALITASAHIARK
Ga0208917_108426513300025840AqueousMSYQDEYPTCYNLKPVTLEKPSPSITDVELAALRGVDLAERVAEPINRFSVARAAIK
Ga0208917_123963933300025840AqueousMCQSDLYPTEYNLKPVTLEKPRPSITDVEVAALKGVDLAERAAEPVNRYSIARGVIRLSAHIA
Ga0208644_101659013300025889AqueousCYNLKPVTLEKPSPSITDVELAALRGVDLAERVAEPVNRFSLARAAIKLSAHIARKLR
Ga0208644_105334743300025889AqueousMCQSDLYPTEYDLKPIVLNQSTSLSITEMEIQALKGIDLAERITDPINRFSVARGVIKLSAHVARKFRNASR
Ga0208644_107974243300025889AqueousMSYQDEYPTCYNLKPVTLEKPSPSITDVELAALRGVDLAERVAEPVNRFSL
Ga0208644_113495313300025889AqueousDLYPTEYNLKPVTLEKKPSITDVEVAALKGVDLAERVAEPVNRYSIARGVIRLSAHIARKFR
Ga0348335_006133_6499_67023300034374AqueousMSYQDEYPTCYDLKPVTLEKPLPSITDVELAALRGVDLAERVAEPINRFSVARAAIKLSAHIARKFR
Ga0348335_012236_1_1563300034374AqueousMSYQDEYPTCYNLKPVTLEKPLPSITDVELAALRGVDLAERVAEPINRFSVA
Ga0348336_190152_396_5603300034375AqueousMCQSDLYPTEYNLKPVTLEKRPSITDVEVAALKGVDLAERAAEPVNRYSIARGVI
Ga0348337_111388_651_8543300034418AqueousMSYQDEYPTCYNLKPVTLEKPLPSITDVELAALRGVDLAERVAEPINRFSVARAAIKLSAHISRKFR


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.