Metagenome / Metatranscriptome Family F105103

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F105103
Family Type	Metagenome / Metatranscriptome
Number of Sequences	100
Average Sequence Length	69 residues
Representative Sequence	CIEFIQTGEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP
Number of Associated Samples	62
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	75.86 %
% of genes near scaffold ends (potentially truncated)	17.00 %
% of genes from short scaffolds (< 2000 bps)	26.00 %
Associated GOLD sequencing projects	47
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (97.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh (86.000 % of family members)
Environment Ontology (ENVO)	Unclassified (86.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (98.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.62% β-sheet: 28.38% Coil/Unstructured: 50.00%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF05951	Peptidase_M15_2	8.00
PF13181	TPR_8	4.00
PF02348	CTP_transf_3	4.00
PF06941	NT5C	2.00
PF00149	Metallophos	1.00
PF02880	PGM_PMM_III	1.00
PF13424	TPR_12	1.00
PF01041	DegT_DnrJ_EryC1	1.00

COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG3108	Uncharacterized conserved protein YcbK, DUF882 family	Function unknown [S]	8.00
COG1083	CMP-N-acetylneuraminic acid synthetase, NeuA/PseF family	Cell wall/membrane/envelope biogenesis [M]	4.00
COG1212	CMP-2-keto-3-deoxyoctulosonic acid synthetase	Cell wall/membrane/envelope biogenesis [M]	4.00
COG1861	Spore coat polysaccharide biosynthesis protein SpsF, cytidylyltransferase family	Cell wall/membrane/envelope biogenesis [M]	4.00
COG4502	5'(3')-deoxyribonucleotidase	Nucleotide transport and metabolism [F]	2.00
COG0033	Phosphoglucomutase/phosphomannomutase	Carbohydrate transport and metabolism [G]	1.00
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	1.00
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	1.00
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	1.00
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	1.00
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	1.00
COG1109	Phosphomannomutase	Carbohydrate transport and metabolism [G]	1.00
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	1.00

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
All Organisms	root	All Organisms	3.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
cellular organisms	root	All Organisms → cellular organisms	3.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	3.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	1.00 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005837\|Ga0078893_10674789	All Organisms → cellular organisms → Bacteria	3072	Open in IMG/M
3300006026\|Ga0075478_10080234	Not Available	1051	Open in IMG/M
3300006621\|Ga0101441_114728	Not Available	2322	Open in IMG/M
3300006874\|Ga0075475_10133830	Not Available	1098	Open in IMG/M
3300016749\|Ga0182053_1379250	Not Available	612	Open in IMG/M
3300017818\|Ga0181565_10209075	Not Available	1339	Open in IMG/M
3300017818\|Ga0181565_10357589	Not Available	970	Open in IMG/M
3300017951\|Ga0181577_10555799	Not Available	712	Open in IMG/M
3300017952\|Ga0181583_10906713	Not Available	513	Open in IMG/M
3300017958\|Ga0181582_10609557	Not Available	667	Open in IMG/M
3300017967\|Ga0181590_10570479	Not Available	778	Open in IMG/M
3300017968\|Ga0181587_10332082	Not Available	1018	Open in IMG/M
3300018041\|Ga0181601_10022782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	4766	Open in IMG/M
3300018041\|Ga0181601_10662832	Not Available	529	Open in IMG/M
3300018418\|Ga0181567_10695819	Not Available	650	Open in IMG/M
3300018418\|Ga0181567_11015728	Not Available	517	Open in IMG/M
3300018421\|Ga0181592_10631245	Not Available	723	Open in IMG/M
3300019261\|Ga0182097_1080615	Not Available	928	Open in IMG/M
3300019459\|Ga0181562_10585795	Not Available	522	Open in IMG/M
3300020014\|Ga0182044_1054071	Not Available	554	Open in IMG/M
3300020207\|Ga0181570_10175715	Not Available	1151	Open in IMG/M
3300021356\|Ga0213858_10054609	Not Available	1936	Open in IMG/M
3300021379\|Ga0213864_10098762	All Organisms → cellular organisms → Bacteria	1445	Open in IMG/M
3300022914\|Ga0255767_1215125	Not Available	766	Open in IMG/M
3300022926\|Ga0255753_1227186	Not Available	769	Open in IMG/M
3300022927\|Ga0255769_10118829	Not Available	1301	Open in IMG/M
3300023084\|Ga0255778_10336064	Not Available	678	Open in IMG/M
3300023108\|Ga0255784_10405285	Not Available	647	Open in IMG/M
3300023175\|Ga0255777_10555375	Not Available	580	Open in IMG/M

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	98.00%
Freshwater	Environmental → Aquatic → Freshwater	1.00%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	1.00%

Habitat	Taxonomy	Distribution
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	86.00%
Coastal	Environmental → Aquatic → Marine → Coastal	12.00%
River	Environmental → Aquatic → Freshwater → River	1.00%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	1.00%

Habitat	Taxonomy	Distribution
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	86.00%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	12.00%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	1.00%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	1.00%

Habitat	Taxonomy	Distribution
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	86.00%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	5.00%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	3.00%
Marine Surface Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water	3.00%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	1.00%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	1.00%
Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water	1.00%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005837	Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18	Environmental	Open in IMG/M
3300006026	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA	Environmental	Open in IMG/M
3300006621	Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ07 time point	Environmental	Open in IMG/M
3300006874	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA	Environmental	Open in IMG/M
3300007623	Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_H2O_MG	Environmental	Open in IMG/M
3300010297	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNA	Environmental	Open in IMG/M
3300016734	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041410CS metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016749	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011512AT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016791	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041412BS metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017818	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017949	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017950	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)	Environmental	Open in IMG/M
3300017951	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017952	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017956	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017957	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017958	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017962	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071404AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017964	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071410BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017967	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017968	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017969	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017985	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017986	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018039	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071402CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018041	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaG (megahit assembly)	Environmental	Open in IMG/M
3300018048	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaG (megahit assembly)	Environmental	Open in IMG/M
3300018049	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018416	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018418	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101403AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018421	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018423	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018424	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300019261	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041413BS (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019262	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101412AT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019459	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011511BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300019937	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW29Aug16_MG	Environmental	Open in IMG/M
3300020014	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011503CT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020174	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041409US metaG (spades assembly)	Environmental	Open in IMG/M
3300020178	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041405US metaG (spades assembly)	Environmental	Open in IMG/M
3300020188	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041411US metaG (spades assembly)	Environmental	Open in IMG/M
3300020191	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041410US metaG (spades assembly)	Environmental	Open in IMG/M
3300020207	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101406AT metaG (spades assembly)	Environmental	Open in IMG/M
3300021356	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245	Environmental	Open in IMG/M
3300021379	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247	Environmental	Open in IMG/M
3300022914	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071402CT metaG	Environmental	Open in IMG/M
3300022926	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaG	Environmental	Open in IMG/M
3300022927	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG	Environmental	Open in IMG/M
3300022934	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG	Environmental	Open in IMG/M
3300022935	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405AT metaG	Environmental	Open in IMG/M
3300022939	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaG	Environmental	Open in IMG/M
3300023084	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG	Environmental	Open in IMG/M
3300023105	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG	Environmental	Open in IMG/M
3300023108	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101403AT metaG	Environmental	Open in IMG/M
3300023110	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG	Environmental	Open in IMG/M
3300023116	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG	Environmental	Open in IMG/M
3300023172	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG	Environmental	Open in IMG/M
3300023175	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaG	Environmental	Open in IMG/M
3300023180	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG	Environmental	Open in IMG/M
3300025610	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025840	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300028109	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 41R (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0078893_106747894	3300005837	Marine Surface Water	MFGHSNTGCIEFIQTGEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP*
Ga0078893_124844433	3300005837	Marine Surface Water	TKHDADGMQTSVNDWLNGYFSGRIRETGRNLTIINTLNVPLYDLLLKMCENDPNLHLSEAADAVYVIIP*
Ga0075478_100802342	3300006026	Aqueous	MFGHSNTECIEFIQTGEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP*
Ga0101441_1147285	3300006621	Marine Surface Water	MFGHSNTACIEFIQADEEGGPEPAVNSWILGYFSGRIRETNRELTIINELNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP*
Ga0075475_100400231	3300006874	Aqueous	VNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP*
Ga0075475_101338301	3300006874	Aqueous	MFGHSNTGCIEFIQTGEENGPDPSVNSWILGYFSGRIRETNRELQIINELNIPLYDLLRKTCVNDPNLNLQEAADLVYLSIP*
Ga0102948_11637271	3300007623	Water	GPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADLVYVSIP*
Ga0129345_11805002	3300010297	Freshwater To Marine Saline Gradient	YFSGRIRETNRELQIINELNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP*
Ga0182092_14387941	3300016734	Salt Marsh	VNGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP
Ga0182053_13792502	3300016749	Salt Marsh	QTMFGHSNTGCIEFIQTGEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP
Ga0182095_15690393	3300016791	Salt Marsh	DPSVNSWILGYFSGRIRETNRELQIINELNIPLYDLLHKTCVNDPNLNLQEAADLVYLSI
Ga0181565_102090751	3300017818	Salt Marsh	MFGHSNTGCIEFIQAGEENGPDPSVDSWILGYFSGRIRETNRELQIVNVLNIPLYDLLYKTCVNDPNLNLQEAADLVYLSIP
Ga0181565_103575892	3300017818	Salt Marsh	MFGYSNTECIEFIQAGEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP
Ga0181565_105960032	3300017818	Salt Marsh	EENGPDPSVNSWILGYFSGRIRETNRELQIINELNIPLYDLLHKTCVNDPNLNLQEAADLVYLLIP
Ga0181584_100757431	3300017949	Salt Marsh	TGEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADRVYLSIP
Ga0181584_102516523	3300017949	Salt Marsh	GYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP
Ga0181584_104505141	3300017949	Salt Marsh	NPSNSAVSNWILGYFSGRIRETGRELKIVNELNIPLYDLLHKECSNNPNLTLREAADIVYTIIP
Ga0181584_108396831	3300017949	Salt Marsh	MFGHSNNGCIEFIQTDEENGPDPSVNSWILGYFSGRIRETNRELQIINELNIPLYDLLRKTCVNDPNLNLQEAADLVYLSIP
Ga0181607_100223871	3300017950	Salt Marsh	GEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP
Ga0181577_100903921	3300017951	Salt Marsh	GEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADRVYLSIP
Ga0181577_105557991	3300017951	Salt Marsh	MFGHSNTGCIEFIQTGEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP
Ga0181577_107613711	3300017951	Salt Marsh	VNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP
Ga0181583_109067131	3300017952	Salt Marsh	MFGYSNTECIEFIQAGEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAA
Ga0181580_102151541	3300017956	Salt Marsh	TCIDFLTKHDADGMQTAVNDWLNGYFSGRIRETGRNLTIINTLNVPLYDLLLKMCETNPNLHLSEAADAVYVIIP
Ga0181571_101321842	3300017957	Salt Marsh	MFGFSNTGCIEFIQKGEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADRVYLSIP
Ga0181571_104006732	3300017957	Salt Marsh	SWILGYFSGRIRETNRELQIVNVLNIPLYDLLYKTCVNDPNLNLQEAADLVYLSIP
Ga0181571_106844522	3300017957	Salt Marsh	ISNWIFGYFSGRIRETGRELQIINDLNIPLYDLLHKTCSGDPNMNLQQAADIVYVIIP
Ga0181582_102257062	3300017958	Salt Marsh	MFGFSNTGCIEFIQKGEENGPDLSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADRVYLSIP
Ga0181582_103792072	3300017958	Salt Marsh	SVNSWILGYFSGRIRETNRELKIINELNIPLYDLLRKSCVNDPNLNLQEAADLVYFSIP
Ga0181582_104028302	3300017958	Salt Marsh	MFGYSNTECIEFIQAGEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVND
Ga0181582_106095572	3300017958	Salt Marsh	MFGHSNTECIEFMQAEEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP
Ga0181581_108314171	3300017962	Salt Marsh	MFGQSNTTCIDFLTKHDADGMQTAVNDWLNGYFSGRIRETGRNLTIINTLNVPLYDLLLKMCETNPNLHLSEAADAVYVIIP
Ga0181589_103494612	3300017964	Salt Marsh	NWIDGYFSGRIRETGREMKIVNELNIPLYELLRKTCDNDPTLNLQQAADIVYVAIP
Ga0181589_107828671	3300017964	Salt Marsh	YFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQGAADLVYLSIP
Ga0181589_108626681	3300017964	Salt Marsh	FIQKGEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADRVYLSIP
Ga0181590_105556351	3300017967	Salt Marsh	NTGCIEFIQKGEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADRVYLSIP
Ga0181590_105704791	3300017967	Salt Marsh	MFGYSNTECIEFIQAGEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLN
Ga0181587_100830021	3300017968	Salt Marsh	DPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADLVYLSI
Ga0181587_103320822	3300017968	Salt Marsh	MFGYYNTECIEFIQAGEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP
Ga0181587_106643291	3300017968	Salt Marsh	SVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP
Ga0181585_106190082	3300017969	Salt Marsh	MFGHSNTGCIEFIQAGEENGPDPSVDSWILGYFSGRIRETNRELQIVNVLNIPLYDLLYKTCVNDP
Ga0181585_107250842	3300017969	Salt Marsh	IQTDEENGPDPSVNSWILGYFSGRIRETNRELQIINELNIPLYDLLRKTCVNDPNLNLQEAADLVYLSIP
Ga0181576_105967242	3300017985	Salt Marsh	MFGHSNTGCIEFIQAGEENGPDPSVDSWILGYFSGRIRETNRELQIVNVLNIPLYDLL
Ga0181576_106945661	3300017985	Salt Marsh	ADGMQTAVNDWLNGYFSGRIRETGRNLTIINTLNVPLYDLLLKMCETNPNLHLSEAADAVYVIIP
Ga0181569_104234032	3300017986	Salt Marsh	ENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP
Ga0181579_105354361	3300018039	Salt Marsh	SGRIRETNRELKIINELNIPLYDLLRKSCVNDPNLNLQEAADLVYFSIP
Ga0181601_100227823	3300018041	Salt Marsh	MFGHSNTGCIEFIQTGEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLYKTCVNDPNLNLQEAADLVYLSIP
Ga0181601_104125562	3300018041	Salt Marsh	CIEFIQTGEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP
Ga0181601_105340021	3300018041	Salt Marsh	GTDLAISNWILGYFSGRIRETGRELQIINDLNIPLYDLLLKTCSGDPNMNLQQAADIVYVIIP
Ga0181601_106628321	3300018041	Salt Marsh	MFGYSNTECIEFIQAGEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQE
Ga0181606_103876391	3300018048	Salt Marsh	EENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP
Ga0181572_100883521	3300018049	Salt Marsh	PDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADRVYLSIP
Ga0181553_102091481	3300018416	Salt Marsh	LEDHKVNGINTSVLNWIDGYFSGRIRETGREMKIVNELNIPLYDLLRKTCDNDPTLNLQQAADIVYVAIP
Ga0181567_106958191	3300018418	Salt Marsh	IEFIQAGEENGPDPSVDSWILGYFSGRIRETNRELQIVNVLNIPLYDLLYKTCVNDPNLNLQEAADLVYLSIP
Ga0181567_110157281	3300018418	Salt Marsh	MFGHSNTGCIEFMQAGEENGPDPSVNSWILGYFSGRIRETNRDLQIINVLNIPLYDLLHKACVNDPNLNLQEAADAVYLSIP
Ga0181592_106312451	3300018421	Salt Marsh	SQTMFGHSNTGCIEFIQAGEENGPDPSVNSWILGYFSGRIRETNRELKIINELNIPLYDLLRKSCVNDPNLNLQEAADLVYFSIP
Ga0181592_108227142	3300018421	Salt Marsh	FGQSNTTCIDFLTKHDADGMQTAVNDWLNGYFSGRIRETGRNLTIINTLNVPLYDLLLKMCETNPNLHLSEAADAVYVIIP
Ga0181593_101516951	3300018423	Salt Marsh	TNRELKIINELNIPLYDLLRKSCVNDPNLNLQEAADLVYFSIP
Ga0181591_104242661	3300018424	Salt Marsh	VLNWIDGYFSGRIRETGREMKIVNELNIPLYELLRKTCDNDPTLNLQQAADIVYVAIP
Ga0181591_106686602	3300018424	Salt Marsh	LEEHQKSGTDLAISNWIFGYFSGRIRETGRELQIINDLNIPLYDLLHKTCSGDPNMNLQQAADIVYVIIP
Ga0182097_10806152	3300019261	Salt Marsh	ATSGKGQTMFGHSNNGCIEFIQTDEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP
Ga0182066_10832522	3300019262	Salt Marsh	KHDADGMQTAVNDWLNGYFSGRIRETGRNLTIINTLNVPLYDLLLKMCENNPNLHLSEAADAVYVIIP
Ga0181562_105857951	3300019459	Salt Marsh	MFGHSNNGCIEFIQTDEENGPDPSVNSWILGYFSGRIRETNRELQIINELNIPLYDLLHKTCVNDPNLNLQEAADLVYLSI
Ga0194022_10448962	3300019937	Freshwater	SWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVKDPNLNLQEAADLVYLSIP
Ga0182044_10540711	3300020014	Salt Marsh	TMFGHSNTGCIEFMQAGEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP
Ga0181603_101111842	3300020174	Salt Marsh	MFGHSNNGCIEFIQTDEENGPDPSVNSWILGYFSGRIRETNRELQIINELNIPLYDLLHKTCVNDPNLNLQEAA
Ga0181599_12539381	3300020178	Salt Marsh	MFGYSNTECIEFIQAGEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLY
Ga0181605_101299731	3300020188	Salt Marsh	GPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP
Ga0181605_102073552	3300020188	Salt Marsh	MFGHSNNGCIEFIQTDEENGPDPSVNSWILGYFSGRIRETNRELQIINELNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP
Ga0181605_102575151	3300020188	Salt Marsh	SDPSVNNWILGYFSGRIRETNRELQIINELNIPLYDLLNKTCVNNPNLNLQEAADLIYLSIP
Ga0181604_100672623	3300020191	Salt Marsh	NSWILGYFSGRIRETNRELQIINVLNIPLYDLLYKTCVNDPNLNLQEAADLVYLSIP
Ga0181570_101757151	3300020207	Salt Marsh	MFGHSNTGCIEFIQTGEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEA
Ga0213858_100546093	3300021356	Seawater	MFGHSNTGCIEFIQTDEENGPDPSVNSWILGYVSGRIRETNRELQIINELNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP
Ga0213864_100987621	3300021379	Seawater	MFGHSNTECIEFIQTDEENGPDPSVNSWILGYFSGRIRETNRELQIINELNIPLYDLLHKTCINDPNLNL
Ga0255767_12151251	3300022914	Salt Marsh	MFGYSNTECIEFIQAGEENGPDPSVNSWILGYFSGRIRETNRELQIINVLSIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP
Ga0255753_10110161	3300022926	Salt Marsh	MQAEEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP
Ga0255753_12271862	3300022926	Salt Marsh	NTECIEFIQAGEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP
Ga0255769_101188291	3300022927	Salt Marsh	MFGHSNTGCIEFIQTGEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLYKTCVNDPNLNLQEAA
Ga0255769_102950021	3300022927	Salt Marsh	MFGYSNTECIEFIQAGEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVN
Ga0255769_103191222	3300022927	Salt Marsh	FIQTGEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP
Ga0255781_103551791	3300022934	Salt Marsh	GEENGPDPSVDSWILGYFSGRIRETNRELQIVNVLNIPLYDLLYKTCVNDPNLNLQEAADLVYLSIP
Ga0255780_100233875	3300022935	Salt Marsh	TVEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP
Ga0255780_102279512	3300022935	Salt Marsh	MFGYSNTECIEFIQAGEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDLN
Ga0255754_101597851	3300022939	Salt Marsh	VNSWILGYFSGRIRETNRELQIINELNIPLYDLLHKTCVNDPNLNLQEAADLVYLLIP
Ga0255778_103360641	3300023084	Salt Marsh	MFGYSNTECIEFIQAGEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADVVYLS
Ga0255782_102228992	3300023105	Salt Marsh	PSVNSWILGYFSGRIRETNRELQIINELNIPLYDLLHKTCVNDPNLNLQEAADLVYLLIP
Ga0255784_104052852	3300023108	Salt Marsh	TMFGYSNTECIEFIQAGEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP
Ga0255743_100957462	3300023110	Salt Marsh	MFGHSNTGCIEFIQTGEENGPDPSVNSWILGYFSGRIRETNRELQIINELNIPLYDLLHKTCVNDPNLNLQEAADLVYLLIP
Ga0255751_100829384	3300023116	Salt Marsh	TGEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP
Ga0255766_101423653	3300023172	Salt Marsh	IEFIQTGEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP
Ga0255777_104400692	3300023175	Salt Marsh	TGCIEFIQTGEENGPDPSVNSWILGYFSGRIRETNRELQIINELNIPLYDLLHKTCVNDPNLNLQEAADLVYLLIP
Ga0255777_105553751	3300023175	Salt Marsh	MFGYSNTECIEFIQAGEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADLVYL
Ga0255777_106538052	3300023175	Salt Marsh	YFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP
Ga0255768_101497562	3300023180	Salt Marsh	MFGHSNTGCIEFIQTDEENGPDPSVNSWILGYFSGRIRETNRELQIINELNIPLYDLLRKTCVNDPNLNLQEAADLVYLSIP
Ga0255768_103505702	3300023180	Salt Marsh	NSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP
Ga0255768_104073272	3300023180	Salt Marsh	DLSISNWILGYFSGRIRETGRELEIINDLNIPLYDLLLKTCSGDPNMNLQQAADIVYVII
Ga0255768_105961491	3300023180	Salt Marsh	MFGHSNTGCIEFIQTGEENGPDPAVNSWILGYFSGRIRETNRELQIINELNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP
Ga0208149_10995012	3300025610	Aqueous	ECIEFMQAEEENGPDPSVNSWILGYFSGRIRETNRELQIINVLNIPLYDLLHKTCVNDPNLNLQEAADLVYLSIP
Ga0208917_12836582	3300025840	Aqueous	QTDEENGPDPSVNSWILGYFSGRIRETNRELQIINELNIPLYDLLRKTCVNDPNLNLQEAADLVYLSIP
Ga0247582_10731321	3300028109	Seawater	NTTCIDFLTKHDADGMQTSVNDWLNGYFSGRIRETGRNLTIINTLNVPLYDLLLKTCENDPNLHLSEAADAVYVIIP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F105103

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences