NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105582

Metagenome / Metatranscriptome Family F105582

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105582
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 58 residues
Representative Sequence MAPKKEPSRKVLDKHAKFLAAWEAAGFPDKFENEGTSLNNVRSTAEWYREQKQKASKD
Number of Associated Samples 64
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 78.00 %
% of genes near scaffold ends (potentially truncated) 29.00 %
% of genes from short scaffolds (< 2000 bps) 74.00 %
Associated GOLD sequencing projects 60
AlphaFold2 3D model prediction Yes
3D model pTM-score0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (51.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(42.000 % of family members)
Environment Ontology (ENVO) Unclassified
(38.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(73.000 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 36.05%    β-sheet: 4.65%    Coil/Unstructured: 59.30%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.42
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF00543P-II 5.00
PF00702Hydrolase 4.00
PF02492cobW 3.00
PF07238PilZ 3.00
PF03949Malic_M 3.00
PF00072Response_reg 2.00
PF00144Beta-lactamase 2.00
PF02627CMD 1.00
PF00873ACR_tran 1.00
PF00122E1-E2_ATPase 1.00
PF00578AhpC-TSA 1.00
PF00665rve 1.00
PF13174TPR_6 1.00
PF11154DUF2934 1.00
PF01029NusB 1.00
PF08471Ribonuc_red_2_N 1.00
PF05988DUF899 1.00
PF13185GAF_2 1.00
PF14317YcxB 1.00
PF07589PEP-CTERM 1.00
PF04325DUF465 1.00
PF07719TPR_2 1.00
PF00069Pkinase 1.00
PF00462Glutaredoxin 1.00
PF08323Glyco_transf_5 1.00
PF11026DUF2721 1.00
PF01878EVE 1.00
PF16694Cytochrome_P460 1.00
PF13231PMT_2 1.00
PF02912Phe_tRNA-synt_N 1.00
PF07927HicA_toxin 1.00
PF07963N_methyl 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG0347Nitrogen regulatory protein PIISignal transduction mechanisms [T] 5.00
COG0515Serine/threonine protein kinaseSignal transduction mechanisms [T] 4.00
COG0281Malic enzymeEnergy production and conversion [C] 3.00
COG0686Alanine dehydrogenase (includes sporulation protein SpoVN)Amino acid transport and metabolism [E] 3.00
COG1680CubicO group peptidase, beta-lactamase class C familyDefense mechanisms [V] 2.00
COG1686D-alanyl-D-alanine carboxypeptidaseCell wall/membrane/envelope biogenesis [M] 2.00
COG2367Beta-lactamase class ADefense mechanisms [V] 2.00
COG0016Phenylalanyl-tRNA synthetase alpha subunitTranslation, ribosomal structure and biogenesis [J] 1.00
COG0209Ribonucleotide reductase alpha subunitNucleotide transport and metabolism [F] 1.00
COG0297Glycogen synthaseCarbohydrate transport and metabolism [G] 1.00
COG0438Glycosyltransferase involved in cell wall bisynthesisCell wall/membrane/envelope biogenesis [M] 1.00
COG0474Magnesium-transporting ATPase (P-type)Inorganic ion transport and metabolism [P] 1.00
COG0599Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase familyGeneral function prediction only [R] 1.00
COG1673Predicted RNA-binding protein, contains PUA-like EVE domainGeneral function prediction only [R] 1.00
COG1724Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase familyGeneral function prediction only [R] 1.00
COG2128Alkylhydroperoxidase family enzyme, contains CxxC motifInorganic ion transport and metabolism [P] 1.00
COG2216K+ transport ATPase, ATPase subunit KdpBInorganic ion transport and metabolism [P] 1.00
COG2217Cation-transporting P-type ATPaseInorganic ion transport and metabolism [P] 1.00
COG2801Transposase InsO and inactivated derivativesMobilome: prophages, transposons [X] 1.00
COG2826Transposase and inactivated derivatives, IS30 familyMobilome: prophages, transposons [X] 1.00
COG2947Predicted RNA-binding protein, contains EVE domainGeneral function prediction only [R] 1.00
COG3316Transposase (or an inactivated derivative), DDE domainMobilome: prophages, transposons [X] 1.00
COG4312Predicted dithiol-disulfide oxidoreductase, DUF899 familyGeneral function prediction only [R] 1.00
COG4584TransposaseMobilome: prophages, transposons [X] 1.00


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms51.00 %
UnclassifiedrootN/A49.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001593|JGI12635J15846_10405174Not Available822Open in IMG/M
3300002245|JGIcombinedJ26739_100059047All Organisms → cellular organisms → Bacteria → Acidobacteria3510Open in IMG/M
3300004631|Ga0058899_10114266Not Available1114Open in IMG/M
3300005174|Ga0066680_10036849All Organisms → cellular organisms → Bacteria2804Open in IMG/M
3300005530|Ga0070679_100364733All Organisms → cellular organisms → Bacteria1392Open in IMG/M
3300005538|Ga0070731_10328605Not Available1015Open in IMG/M
3300005538|Ga0070731_10558793All Organisms → cellular organisms → Bacteria → Acidobacteria762Open in IMG/M
3300005538|Ga0070731_10862072Not Available600Open in IMG/M
3300005586|Ga0066691_10679022All Organisms → cellular organisms → Bacteria610Open in IMG/M
3300005921|Ga0070766_10011299All Organisms → cellular organisms → Bacteria4587Open in IMG/M
3300005921|Ga0070766_10803659Not Available641Open in IMG/M
3300006176|Ga0070765_100305607All Organisms → cellular organisms → Bacteria1471Open in IMG/M
3300006176|Ga0070765_100854499Not Available860Open in IMG/M
3300009143|Ga0099792_11234626Not Available508Open in IMG/M
3300010379|Ga0136449_100266430All Organisms → cellular organisms → Bacteria3163Open in IMG/M
3300010379|Ga0136449_101781035Not Available923Open in IMG/M
3300011120|Ga0150983_13163299Not Available1071Open in IMG/M
3300011120|Ga0150983_15915344Not Available917Open in IMG/M
3300011120|Ga0150983_16520490Not Available1216Open in IMG/M
3300012004|Ga0120134_1099218All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium544Open in IMG/M
3300012203|Ga0137399_10324084All Organisms → cellular organisms → Bacteria1276Open in IMG/M
3300012582|Ga0137358_10452760All Organisms → cellular organisms → Bacteria → Acidobacteria866Open in IMG/M
3300012683|Ga0137398_10146974All Organisms → cellular organisms → Bacteria1527Open in IMG/M
3300012917|Ga0137395_10297969All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1142Open in IMG/M
3300012925|Ga0137419_10037779All Organisms → cellular organisms → Bacteria → Acidobacteria3019Open in IMG/M
3300012925|Ga0137419_10948703Not Available710Open in IMG/M
3300012944|Ga0137410_10361236Not Available1163Open in IMG/M
3300012944|Ga0137410_11184172Not Available657Open in IMG/M
3300014056|Ga0120125_1166600All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium541Open in IMG/M
3300014501|Ga0182024_10014458All Organisms → cellular organisms → Bacteria15257Open in IMG/M
3300015241|Ga0137418_10099710All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2614Open in IMG/M
3300017955|Ga0187817_10177554Not Available1356Open in IMG/M
3300018007|Ga0187805_10069612Not Available1583Open in IMG/M
3300020579|Ga0210407_10514256Not Available935Open in IMG/M
3300020579|Ga0210407_11204453Not Available570Open in IMG/M
3300020580|Ga0210403_10120735Not Available2133Open in IMG/M
3300020580|Ga0210403_10382692All Organisms → cellular organisms → Bacteria1150Open in IMG/M
3300020580|Ga0210403_10701917Not Available810Open in IMG/M
3300020580|Ga0210403_11262069Not Available566Open in IMG/M
3300020581|Ga0210399_10996369All Organisms → cellular organisms → Bacteria675Open in IMG/M
3300020581|Ga0210399_11097985Not Available637Open in IMG/M
3300020581|Ga0210399_11358673All Organisms → cellular organisms → Bacteria → Acidobacteria557Open in IMG/M
3300020582|Ga0210395_10774341All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium716Open in IMG/M
3300020582|Ga0210395_10823228Not Available692Open in IMG/M
3300020583|Ga0210401_10105578Not Available2645Open in IMG/M
3300020583|Ga0210401_10403617All Organisms → cellular organisms → Bacteria1229Open in IMG/M
3300021088|Ga0210404_10043954All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2071Open in IMG/M
3300021088|Ga0210404_10871316Not Available515Open in IMG/M
3300021168|Ga0210406_10334689Not Available1224Open in IMG/M
3300021168|Ga0210406_10441889All Organisms → cellular organisms → Bacteria1036Open in IMG/M
3300021168|Ga0210406_10642971Not Available823Open in IMG/M
3300021170|Ga0210400_10802503Not Available771Open in IMG/M
3300021171|Ga0210405_10678638All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium797Open in IMG/M
3300021171|Ga0210405_10741218Not Available756Open in IMG/M
3300021178|Ga0210408_10016189All Organisms → cellular organisms → Bacteria6019Open in IMG/M
3300021178|Ga0210408_10218307Not Available1517Open in IMG/M
3300021181|Ga0210388_10297797All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1417Open in IMG/M
3300021402|Ga0210385_10076131All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2296Open in IMG/M
3300021404|Ga0210389_10279260All Organisms → cellular organisms → Bacteria1308Open in IMG/M
3300021406|Ga0210386_10237948All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1551Open in IMG/M
3300021407|Ga0210383_10441357Not Available1124Open in IMG/M
3300021420|Ga0210394_10002980All Organisms → cellular organisms → Bacteria22192Open in IMG/M
3300021420|Ga0210394_10709747All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.881Open in IMG/M
3300021420|Ga0210394_11706116Not Available527Open in IMG/M
3300021432|Ga0210384_10000143All Organisms → cellular organisms → Bacteria108556Open in IMG/M
3300021432|Ga0210384_10004046All Organisms → cellular organisms → Bacteria16565Open in IMG/M
3300021432|Ga0210384_10022470All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS1916031Open in IMG/M
3300021432|Ga0210384_10037690All Organisms → cellular organisms → Bacteria4463Open in IMG/M
3300021432|Ga0210384_10374560All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingosinicellaceae → Sandaracinobacteroides → Sandaracinobacteroides saxicola1282Open in IMG/M
3300021432|Ga0210384_11351150All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium617Open in IMG/M
3300021477|Ga0210398_11468568Not Available531Open in IMG/M
3300021479|Ga0210410_10008086All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales9092Open in IMG/M
3300021479|Ga0210410_10049461All Organisms → cellular organisms → Bacteria → Acidobacteria3662Open in IMG/M
3300022726|Ga0242654_10400278All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium527Open in IMG/M
3300026499|Ga0257181_1022763Not Available942Open in IMG/M
3300026555|Ga0179593_1023409All Organisms → cellular organisms → Bacteria3227Open in IMG/M
3300026557|Ga0179587_10059140All Organisms → cellular organisms → Bacteria → Acidobacteria2227Open in IMG/M
3300027266|Ga0209215_1005495All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1462Open in IMG/M
3300027565|Ga0209219_1115839Not Available656Open in IMG/M
3300027660|Ga0209736_1011169All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2875Open in IMG/M
3300027674|Ga0209118_1015869All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2469Open in IMG/M
3300027674|Ga0209118_1044723Not Available1322Open in IMG/M
3300027674|Ga0209118_1146627Not Available652Open in IMG/M
3300027854|Ga0209517_10176774Not Available1339Open in IMG/M
3300027869|Ga0209579_10661824Not Available566Open in IMG/M
3300028906|Ga0308309_10565843Not Available985Open in IMG/M
3300028906|Ga0308309_10831882Not Available802Open in IMG/M
3300030007|Ga0311338_12015815Not Available512Open in IMG/M
3300030730|Ga0307482_1166477Not Available652Open in IMG/M
3300031128|Ga0170823_10866774All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria532Open in IMG/M
3300031231|Ga0170824_104734102Not Available632Open in IMG/M
3300031236|Ga0302324_100047171All Organisms → cellular organisms → Bacteria7822Open in IMG/M
3300031708|Ga0310686_119080559Not Available875Open in IMG/M
3300031753|Ga0307477_10168040Not Available1529Open in IMG/M
3300031753|Ga0307477_11042178Not Available535Open in IMG/M
3300031823|Ga0307478_10723069All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium834Open in IMG/M
3300031962|Ga0307479_10007075All Organisms → cellular organisms → Bacteria → Acidobacteria10341Open in IMG/M
3300031962|Ga0307479_10062647Not Available3585Open in IMG/M
3300031962|Ga0307479_12100885Not Available513Open in IMG/M
3300032180|Ga0307471_102195646All Organisms → cellular organisms → Bacteria695Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil42.00%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil12.00%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil12.00%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil8.00%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil6.00%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil4.00%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil3.00%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment2.00%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost2.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.00%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil2.00%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa2.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.00%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost1.00%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300004631Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005174Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129EnvironmentalOpen in IMG/M
3300005530Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaGEnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300012004Permafrost microbial communities from Nunavut, Canada - A30_5cm_6MEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014056Permafrost microbial communities from Nunavut, Canada - A20_5cm_0MEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300015241Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300018007Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300022726Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300026499Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-BEnvironmentalOpen in IMG/M
3300026555Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027266Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027565Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027660Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027674Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027854Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)EnvironmentalOpen in IMG/M
3300027869Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300030007I_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300030730Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031128Oak Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031236Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12635J15846_1040517413300001593Forest SoilYRDVGKWDSEANMAPKKEPSRKVLDKHAKFLAAWEAAGFPDKFENEGTWLNNVRSTAEWYREQKQKAAKD*
JGIcombinedJ26739_10005904743300002245Forest SoilASMAPRTEPSKKVIDKHAKFLASWEAAGFPDKFEYEGTSLNNVRSTAEWYREQKQKAAND
Ga0058899_1011426613300004631Forest SoilMAPRTEPSKKVIDKHAKFLAAWEAAGFPDKFEYEGTSLNNVRSTAEWYREQKQKAAND*
Ga0066680_1003684963300005174SoilMAAKREPSKKVVDKHAKFLAAWEAAGFPDKFEYEGTTLNNVRSTADWYREQKLRAARD*
Ga0070679_10036473343300005530Corn RhizosphereMAPPKEPSRKVLDKHAKFLAAWEAAGFPDKFQYEGTSLNNVRSTAEWYREQKRK
Ga0070731_1032860533300005538Surface SoilMMPKREPSNKLLDKHAKFLAAWEAAGFPDKFESDGTSLNNIRPTAEWYRAQKQKGAGTKPS*
Ga0070731_1055879323300005538Surface SoilVATPRREPSDKLLDKHAKFLAAWEAAGYPDKFEYDGTTLNNVRTTAEWYRKQKQQKSSKATTSR*
Ga0070731_1086207223300005538Surface SoilMMPKKEPSNKLLDKHAKFLAAWEAAGFPDKFEADGTSLNNIRPTAEWYREQKKKAAGTKPS*
Ga0066691_1067902223300005586SoilMAATKREPSKKVIDKHAKFLAAWEAAGFPNKFEFEGTSLNNVRSTADWYREQKQRIAKDF
Ga0070766_1001129953300005921SoilMAPKKEPSRKVFDKHAKFLAAWEAAGFPDKFENEGTSLNNVRSTAEWYRKQKQKAAKD*
Ga0070766_1080365923300005921SoilMAPRTEPSKKVIDKHAKFLAAWEAAGFPDKFEYEGTSLNNVRSTAEWYREQKQKATND*
Ga0070765_10030560723300006176SoilMAPKREPSRKILDKHAKFLAAWEAAGFPDKFEKDGTTLNNVRSAAEWYRKQKQKATKD*
Ga0070765_10085449923300006176SoilMAAKREPSKKVVDKHAKFLAAWEAAGFPDKFEYEGTTLNNVRSTADWYREQKQKADED*
Ga0099792_1123462613300009143Vadose Zone SoilMGSKANVAPKREPSKRVIDKHAKFLAAWEAAGFPDKFEYEGTSLINVRSTAEWYREQKLRAAKG*
Ga0136449_10026643023300010379Peatlands SoilMTAKKEPSAKLLDKHAKFLAAWAAAGYPDKFELEGTTLNNIRTTAEWYREQKQQKKKSAKA*
Ga0136449_10178103513300010379Peatlands SoilLKGPSKKVIDKHAKFLAAWEAAGFPDKFEYEGTSLVNLRVVADWYRGQKQKAAKAASSH*
Ga0150983_1316329913300011120Forest SoilMAPRTEPSKKVIDKHAKFLAAWEAAGFPDKFEYEGTSLNNVRSTAEWYR
Ga0150983_1591534413300011120Forest SoilKVIDKHAKFLAAWEAAGFPDKFEYEGTSLNNVRSTAEWYREQKQKAAND*
Ga0150983_1652049023300011120Forest SoilMTPKKEPSRKILDKHAKFLAAWEAAGFPNKFDKEGTSLNNVRSTADWYREQKQKATKD*
Ga0120134_109921813300012004PermafrostMANRKGPSKKVLEKHSKFLAAWEAAGFPDKFENEGTWLNNVRSTAEWYREQKQKAAKD*
Ga0137399_1032408423300012203Vadose Zone SoilMRKWNSEASMASKKEPSRKVLDKHAKFLAAWEAAGFPNKFENEGTSLNNVRSTAEWYRKQKQKATKD*
Ga0137358_1045276033300012582Vadose Zone SoilVLDKHAKFLAAWEAAGFPNKFENEGTSLNNVRSTAEWYRKQKQKATKD*
Ga0137398_1014697423300012683Vadose Zone SoilMAPQKEPSRKVLDKHAKFLAAWEAAGFPDKFQYEGTSLNNVRSTAEWYREQKRKAAKD*
Ga0137395_1029796923300012917Vadose Zone SoilMAPKKEPSWKVLDKHAKFLAAWEAAGFPDKFENGGTSLNNVRSTAEWYRKQKQKAAKD*
Ga0137419_1003777933300012925Vadose Zone SoilMASKKEPSRKVLDKHAKFLAAWEAAGFPNKFENEGTSLNNVRSTAEWYRKQKQKATKD*
Ga0137419_1094870313300012925Vadose Zone SoilMPPKKEPSRKILDKHAKFLAAWEAAGFPDKFEKEGTSLNNVRSTAEWYRKQKQKAAKD*
Ga0137410_1036123623300012944Vadose Zone SoilMPPKKEPSRKILDKHAKFLAAWEAAGFPDKFEKEGTSLNNVRSTAEWYREQKQKAAKD*
Ga0137410_1118417213300012944Vadose Zone SoilMRQWNSEASIASKKEPSRKLLDKHAKFLAAWEAAGFPNKFENEGTSLNNVRSTAEWY
Ga0120125_116660013300014056PermafrostSSKVLDKHAKFLAAWEAAGFPDKFENEGTWLNNVRSTAEWYREQKQKAAKD*
Ga0182024_1001445823300014501PermafrostMAPKKEPSRKVLDKHAKFLAAWEAAGFPDKFENGGTSLHNVQSTADWYREQKQKAVKN*
Ga0137418_1009971033300015241Vadose Zone SoilMPPKKEPSRKILDKHAKFLAAWEAAGFPDKFEKEGTSLNNVRSTAEWYRKQKQKATKD*
Ga0187817_1017755423300017955Freshwater SedimentMTAKREPSNKLLDKHAKFLAAWEAAGFPDKFEYDGTTLNNIRTTAEWYREQKQQKQQKQKAAKAGKG
Ga0187805_1006961223300018007Freshwater SedimentMTAKREPSNKLLDKHSKFLAAWEAAGFPDKFEYDGTTLNNIRTTAEWYREQKQQKQQKQKAAKAGKG
Ga0210407_1051425623300020579SoilMAPRTEPSKKVIDKHAKFLAAWEAAGFPEKFEYEGTSLNNVRSTAEWYREQRQKAAND
Ga0210407_1120445313300020579SoilMAPKKEPSGKILDKHAKFLAAWEAAGFPDKFEKEGTSLNNVRSAAEWYRKQKQKATKD
Ga0210403_1012073523300020580SoilMAPNKGPSRKVLNKHAKFLEAWETAGFPDKFEYQGTSLNNVRPTADWYREQKQKAAED
Ga0210403_1038269233300020580SoilMAPRKEPSRKILDKHAKFLAAWEAAGFPDKFEKEGTSLNNVRSAAEWYRKQKQKATKD
Ga0210403_1070191723300020580SoilMAPRTEPSKKVIDKHAKFLAAWEAAGFPEKFEYEGTSLNNVRSTAEWYREQRQ
Ga0210403_1126206923300020580SoilMMPKREPSNKLLDKHAKFLAAWEAAGFPDKFESDGTSLNNIRPTAEWYREQKKKAAGTKP
Ga0210399_1099636913300020581SoilMASKKEPSRKILDKHAKFLAAWEAAGFPDKFDKEGTSLNNVRPTAEWYREQKQK
Ga0210399_1109798513300020581SoilEPSRKILDKHAKFLAAWEAAGFPDKFEKEGSTLNNVRSTAEWYREQKQKATKD
Ga0210399_1135867323300020581SoilLDKHAKFLAAWAAAKFPDHFEYEGASLNTLRSTADWFREHKEKVGKDPASH
Ga0210395_1077434113300020582SoilMAPRTEPSKKVIDKHAKFLAAWEAAGFPDKFEYEGTSLNNVRSTAEWYREQKQKAAND
Ga0210395_1082322823300020582SoilNSEASMAPKREPSKKILDKHAKFLAAWEAAGFPDKFEKDGTTLNNVRSAAEWYRKQKQKATKD
Ga0210401_1010557823300020583SoilMAPKKEPSGKVLDKHAKFLGAWEAAGYPDKFEYQGTSLINVRPTADWYREQKQKAARG
Ga0210401_1040361723300020583SoilMAPKKEPSRKVLDKHAKFLAAWEAAGFPDKFEQEGTTLNNVRSTADWYREQKQKADED
Ga0210404_1004395433300021088SoilMAPKKEPSRKVFDKHAKFLAAWEAAGFPDKFENEGTSLNNVRSTAEWYRKQKQKAAKD
Ga0210404_1087131623300021088SoilMAPKREPSKKILDKHAKFLAAWEAAGFPDKFEKDGTTLNNVRSAAEWYRKQKQKATKD
Ga0210406_1033468913300021168SoilMAAKREPSKKVVDKHAKFLAAWEAAGFPDKFEYEGTTLNNVRSTADWYREQKLRAARD
Ga0210406_1044188923300021168SoilMAPKREPSRKILDKHAKFLAAWEAAGFPDKFEKEGTTLNNVRSAAEWYRKQKQKATKD
Ga0210406_1064297113300021168SoilMAPKKEPTRKILDKHAKFLVAWEAAGFPDKFEYQGTSLNNVRSTADWYRIQKQKAAKG
Ga0210400_1080250323300021170SoilMAPKKEPTRKILDKHAKFLVAWEAAGYPDKFEYQGTSLNNVRSTADWYRIQKQKAAKG
Ga0210405_1067863813300021171SoilLEANIAATRERSKKVVDKHAKLLAAWEAAGFPDKFEYEGTTLNNVRSTADWYREQKLRAARD
Ga0210405_1074121823300021171SoilMGKWVLEAIMAPKKEPSGKVLDKHAKFLAAWEAAGYPDKFEYQGTSLINVRSTADWYREQKQKSARD
Ga0210408_1001618933300021178SoilMAPKKEPSRKVLDKHAKFLAAWEAAGFPDKFDNEGTSLNNVRSTAEWYREQKQKAAKD
Ga0210408_1021830743300021178SoilMAPKKEPSRKVLDKHAMFLAAWEAAGFPDKFENEGTWLNNVWSTAEWYREQKQKAA
Ga0210388_1029779723300021181SoilMMPKKEPSSKLLDKHAKFLAAWEVAGFPDKFEKDGTSLHNIQSTADWFRELKQKAVKD
Ga0210385_1007613123300021402SoilMAPKKEPSKKVLDKHARFLAAWEAAGFPDKFEQEGTTLNNVRSTADWYREQKQKAARG
Ga0210389_1027926023300021404SoilMAQVKGLSKKVIDKHAKFLAAWEAAGFPDKFEYEGASLANLRVVADWYREQKQKVTKAASSH
Ga0210386_1023794833300021406SoilMAPRTEPSKKVIDKHAKFLAAWEAAGFPDKFEYEGTSLNNVRSTAEWFREQKQKAAND
Ga0210383_1044135723300021407SoilMMPKKEPSSKLLDKHAKFLAAWEAAGFPDKFEKDGTSLHNIQSTADWFRELKQKAVKD
Ga0210394_10002980113300021420SoilMAPKKEPSKKVVDKHARFLAAWEAAGFPDKFEYEGTSLNNVRSTAEWYREQKQKAAKD
Ga0210394_1070974723300021420SoilMEPKKEPSRKVLDKHAKFLAAWEAAGFPDKFQYEGTSLNNVRSTADWYREQKRNAAKD
Ga0210394_1170611623300021420SoilREPSRKILDKHAKFLAAWEAAGFPDKFEKEGTTLNNVRSAAEWYRKQKQKATKD
Ga0210384_10000143563300021432SoilMAPKKEPSRKVFDKHAKFLAAWEAAGFPDKFENEGTSLNNVRSTAEWYRKQKQKGAKD
Ga0210384_10004046183300021432SoilMAPKKEPSRKILDKHAKFLAAWEAAGFPDKFEKEGTTLNNVRSTAEWYREQKQKSTKD
Ga0210384_1002247063300021432SoilMASKKEPSRKVLDKHAKFLAAWEAAGFPDKFEKEGTALNNVRSTADWYRKQKQKATKG
Ga0210384_1003769033300021432SoilMAPKKEPSRKVLDKHAMFLAAWEAAGFPDKFENEGTWLNNVWSTAEWYREQKQKAAKD
Ga0210384_1037456033300021432SoilMTTDWEEGVTSRRGPSKKVLEKHAKFLAAWETAGFPDHFEYEGASLNTLRATADWYREQKQKATK
Ga0210384_1135115013300021432SoilEPSKIVIDKHAKFLAAWEAAGFPDKFEYEGTSLNNVRSTAEWYREQKQKAAND
Ga0210398_1146856823300021477SoilMMPKREPSNKLLDKHAKFLAAWEAAGFPDKFESDGTSLNNIRPTAEWYREQKKKA
Ga0210410_10008086103300021479SoilMAPKKEPSRKILDKHAKFLAAWEAAGFPDKFKKEGTTLNNVRPAAEWYRQQKQKANKD
Ga0210410_1004946133300021479SoilMAPNKGPSRKVLNRHAKFLEAWETAGFPDKFEYQGTSLNNVRPTADWYREQKQKAAED
Ga0242654_1040027823300022726SoilGKWGSEASMAPRTEPSKKVIDKHAKFLAAWEAAGFPDKFEYEGTSLNNVRSTAEWYREQKQKAAND
Ga0257181_102276313300026499SoilMAPKKEPSRKVLDKHAKFLAAWETAGFPDKFEKEGTTLNNVRSTADWYREQKQKADKD
Ga0179593_102340943300026555Vadose Zone SoilMAPKKEPSRKILDKHAKFLAAWEAAGFPDKFEKEGTTLNNVRPAAEWYRKQKQKATKY
Ga0179587_1005914033300026557Vadose Zone SoilMAPKKEPSRKVLDKHAKFLAAWEAAGFPDKFEYQGTSLNNVRSTADWYREQKQKATKD
Ga0209215_100549523300027266Forest SoilMAPKKEPSRKVLDKHAKFLAAWEAAGFPDKFEKEGTSLNNVRSTADWYRQQKQKVTRG
Ga0209219_111583923300027565Forest SoilMAPKKEPSRKVFDKHAKFLAAWEAAGFPDKFENEGTSLNNVRSTAEWYRKQKQKDAKD
Ga0209736_101116933300027660Forest SoilMKPKKEPSRKVLDKHAKFLAAWEAAGFPDKFEHEGTSLINVRSTAEWYREQKQKAAKD
Ga0209118_101586933300027674Forest SoilSRKVLDKHAKFLAAWKAAGFPDKFEYQGTSLINVRSTADWYREQKQKAAKD
Ga0209118_104472313300027674Forest SoilMAPKKEPSRKVLDKHAKFLAAWEAAGFPDKFENEGTWLNNVRSTAEWYREQKQKAAKD
Ga0209118_114662723300027674Forest SoilMAPKKEPSRKVLDKHAKFLAAWEAAGFPDKFENEGTSLNNVRSTAEWYREQKQKASKD
Ga0209517_1017677423300027854Peatlands SoilMTAKKEPSAKLLDKHAKFLAAWAAAGYPDKFELEGTTLNNIRTTAEWYREQKQQKKKSAK
Ga0209579_1066182413300027869Surface SoilMMPKREPSNKLLDKHAKFLAAWEAAGFPDKFESDGTSLNNIRPTAEWYRAQKQKGAGTKP
Ga0308309_1056584313300028906SoilVFDKHAKFLAAWEAAGFPDKFENEGTSLNNVRSTAEWYRKQKQKAAKD
Ga0308309_1083188213300028906SoilVGKWDLEANMAAKREPSKKVVDKHAKFLAAWEAAGFPDKFEYEGTTLNNVRSTADWYREQKLRAARD
Ga0311338_1201581513300030007PalsaIFAVRHSEANMAQIKGPSKKVIDKHADFLAAWEAAGFPAKFEFQGTALGNIRPVAQWYQAQKKKPAKTS
Ga0307482_116647713300030730Hardwood Forest SoilRALTQEVRMAQVKGPSKKVIDKHAKFLAAWEAAGFPDKFEYEGASLVNLRVVADWYREQKQKVAKAASSH
Ga0170823_1086677423300031128Forest SoilMEPKREPSRKLLDKHAKFLAAWEAAGFPDKFEYEGASLNNIRSTAEWYWEQKQRTAK
Ga0170824_10473410223300031231Forest SoilMAHKKEPSWKVLDKHAKFLAAWEAAGFPDKFENGGTSLNNVRSTAEWYREQKQKAAKD
Ga0302324_10004717173300031236PalsaMAQIKGPSKKVIDKHADFLAAWEAAGFPAKFEFQGTALGNIRPVAQWYQAQKKKPAKTS
Ga0310686_11908055913300031708SoilKKVVDKHAKFLAAWEAAGFPDKFEYEGTTLNNVRSTADWYREQKLRAARTRTS
Ga0307477_1016804023300031753Hardwood Forest SoilMAPKKEPSRKVLDKHAKFLAAWEAAGFPDKFEKEGTSLNNVRSTADWYRQQKQKATKG
Ga0307477_1104217813300031753Hardwood Forest SoilLEANMAAKREPSKKVVDKHAKFLAAWEAAGFPDKFEYEGTTLNNVRSTADWYREQKLRAARG
Ga0307478_1072306923300031823Hardwood Forest SoilMAPRTEPSKKVVDKHAKFLAAWEAAGFPDKFEYEGTSLNNVRSTAEWYREQKQKAAND
Ga0307479_1000707593300031962Hardwood Forest SoilMAAKREPSKKVVDKHAKFLAAWEAAGFPDKFEYEGTTLNNVRSTADWYREQKLRAARG
Ga0307479_1006264743300031962Hardwood Forest SoilMAPKKEPSRKILDKHAKFLAAWEAAGFPDKFEKEGTSLNNVRSTAEWYREQKQKATKD
Ga0307479_1210088523300031962Hardwood Forest SoilMEPKKEPSRKVLDKHAKFLAAWEAAGFPDKFEYAGTSLINVRSTADWYRKQKRNA
Ga0307471_10219564623300032180Hardwood Forest SoilKEPSRKILDKHAKFLAAWEAAGFPDKFEKEGTSLNNVRSTADWYREQKHKGAKD


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