 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F105644 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 100 |
| Average Sequence Length | 79 residues |
| Representative Sequence | MDVRGYPTRFMKALAISIIAALCSGMAVPASAMPNMPHLFAKHEVASCGGDVAHASEHDRYRNSSRGYSGDAGCYGYGLSSPGYR |
| Number of Associated Samples | 79 |
| Number of Associated Scaffolds | 100 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.00 % |
| % of genes near scaffold ends (potentially truncated) | 1.00 % |
| % of genes from short scaffolds (< 2000 bps) | 1.00 % |
| Associated GOLD sequencing projects | 74 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.24 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (99.000 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (15.000 % of family members) |
| Environment Ontology (ENVO) | Unclassified (27.000 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (54.000 % of family members) |
| ⦗Top⦘ |
| ⦗Top⦘ |
| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 15.04% β-sheet: 0.00% Coil/Unstructured: 84.96% | Feature Viewer |
|
|
|||||
| Powered by Feature Viewer | |||||
| Structure Viewer | |
|---|---|
|
| |
| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.24 |
| Powered by PDBe Molstar | |
| ⦗Top⦘ |
| Pfam ID | Name | % Frequency in 100 Family Scaffolds |
|---|---|---|
| PF00126 | HTH_1 | 24.00 |
| PF03466 | LysR_substrate | 10.00 |
| PF03150 | CCP_MauG | 8.00 |
| PF02518 | HATPase_c | 4.00 |
| PF05598 | DUF772 | 3.00 |
| PF08327 | AHSA1 | 3.00 |
| PF04909 | Amidohydro_2 | 2.00 |
| PF00005 | ABC_tran | 2.00 |
| PF07731 | Cu-oxidase_2 | 1.00 |
| PF00248 | Aldo_ket_red | 1.00 |
| PF07883 | Cupin_2 | 1.00 |
| PF08240 | ADH_N | 1.00 |
| PF04392 | ABC_sub_bind | 1.00 |
| PF02852 | Pyr_redox_dim | 1.00 |
| PF04545 | Sigma70_r4 | 1.00 |
| PF14417 | MEDS | 1.00 |
| PF13533 | Biotin_lipoyl_2 | 1.00 |
| PF06827 | zf-FPG_IleRS | 1.00 |
| COG ID | Name | Functional Category | % Frequency in 100 Family Scaffolds |
|---|---|---|---|
| COG1858 | Cytochrome c peroxidase | Posttranslational modification, protein turnover, chaperones [O] | 8.00 |
| COG2132 | Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA) | Cell cycle control, cell division, chromosome partitioning [D] | 1.00 |
| COG2984 | ABC-type uncharacterized transport system, periplasmic component | General function prediction only [R] | 1.00 |
| ⦗Top⦘ |
| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 99.00 % |
| All Organisms | root | All Organisms | 1.00 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300027903|Ga0209488_10298783 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pusillimonas (ex Stolz et al. 2005) → unclassified Pusillimonas → Pusillimonas sp. ANT_WB101 | 1202 | Open in IMG/M |
| ⦗Top⦘ |
| Habitat | Taxonomy | Distribution |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 15.00% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 13.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 11.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 7.00% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 6.00% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 6.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 5.00% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 4.00% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 4.00% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere | 4.00% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 3.00% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 3.00% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 3.00% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 2.00% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 2.00% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 2.00% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 1.00% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 1.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 1.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 1.00% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 1.00% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil | 1.00% |
| Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere | 1.00% |
| Populus Endosphere | Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere | 1.00% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 1.00% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 1.00% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2228664022 | Soil microbial communities from Great Prairies - Iowa, Native Prairie soil | Environmental | Open in IMG/M |
| 3300002245 | Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027) | Environmental | Open in IMG/M |
| 3300002568 | Grasslands soil microbial communities from Hopland, California, USA - 2 | Environmental | Open in IMG/M |
| 3300005332 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300005434 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG | Environmental | Open in IMG/M |
| 3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Environmental | Open in IMG/M |
| 3300005437 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG | Environmental | Open in IMG/M |
| 3300005439 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG | Environmental | Open in IMG/M |
| 3300005553 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 | Environmental | Open in IMG/M |
| 3300005598 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 | Environmental | Open in IMG/M |
| 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Environmental | Open in IMG/M |
| 3300006051 | Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 | Host-Associated | Open in IMG/M |
| 3300006175 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG | Environmental | Open in IMG/M |
| 3300006797 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108 | Environmental | Open in IMG/M |
| 3300006844 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Host-Associated | Open in IMG/M |
| 3300006845 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 | Host-Associated | Open in IMG/M |
| 3300006854 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4 | Host-Associated | Open in IMG/M |
| 3300006880 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 | Host-Associated | Open in IMG/M |
| 3300006903 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5 | Host-Associated | Open in IMG/M |
| 3300006904 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3 | Host-Associated | Open in IMG/M |
| 3300007076 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 | Host-Associated | Open in IMG/M |
| 3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Host-Associated | Open in IMG/M |
| 3300009100 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2 | Host-Associated | Open in IMG/M |
| 3300009137 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158 | Environmental | Open in IMG/M |
| 3300009143 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 | Environmental | Open in IMG/M |
| 3300009147 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009156 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Host-Associated | Open in IMG/M |
| 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Host-Associated | Open in IMG/M |
| 3300010104 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_16_1 metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300010371 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1 | Environmental | Open in IMG/M |
| 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Host-Associated | Open in IMG/M |
| 3300010398 | Tropical forest soil microbial communities from Panama - MetaG Plot_35 | Environmental | Open in IMG/M |
| 3300010401 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1 | Environmental | Open in IMG/M |
| 3300010403 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3 | Environmental | Open in IMG/M |
| 3300012199 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG | Environmental | Open in IMG/M |
| 3300012206 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG | Environmental | Open in IMG/M |
| 3300012212 | Combined assembly of Hopland grassland soil | Host-Associated | Open in IMG/M |
| 3300012359 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG | Environmental | Open in IMG/M |
| 3300012392 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_4_1 metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300012400 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_4_2 metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300012406 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_1 metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300012955 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG | Environmental | Open in IMG/M |
| 3300012957 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG | Environmental | Open in IMG/M |
| 3300012958 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG | Environmental | Open in IMG/M |
| 3300012960 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG | Environmental | Open in IMG/M |
| 3300012961 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG | Environmental | Open in IMG/M |
| 3300012986 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG | Environmental | Open in IMG/M |
| 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Host-Associated | Open in IMG/M |
| 3300015371 | Combined assembly of cpr5 and col0 rhizosphere and soil | Host-Associated | Open in IMG/M |
| 3300015372 | Soil combined assembly | Host-Associated | Open in IMG/M |
| 3300015373 | Combined assembly of cpr5 rhizosphere | Host-Associated | Open in IMG/M |
| 3300015374 | Col-0 rhizosphere combined assembly | Host-Associated | Open in IMG/M |
| 3300017792 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG | Host-Associated | Open in IMG/M |
| 3300018073 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1 | Environmental | Open in IMG/M |
| 3300018431 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104 | Environmental | Open in IMG/M |
| 3300018468 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111 | Environmental | Open in IMG/M |
| 3300018469 | Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T | Environmental | Open in IMG/M |
| 3300020579 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M | Environmental | Open in IMG/M |
| 3300020581 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M | Environmental | Open in IMG/M |
| 3300021168 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M | Environmental | Open in IMG/M |
| 3300021178 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M | Environmental | Open in IMG/M |
| 3300021478 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M | Environmental | Open in IMG/M |
| 3300022726 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300025905 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025915 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025928 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027605 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027903 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027909 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028047 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes) | Environmental | Open in IMG/M |
| 3300028881 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116 | Environmental | Open in IMG/M |
| 3300031723 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23 | Environmental | Open in IMG/M |
| 3300031740 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05 | Environmental | Open in IMG/M |
| 3300031744 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2) | Environmental | Open in IMG/M |
| 3300032174 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05 | Environmental | Open in IMG/M |
| 3300032180 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 | Environmental | Open in IMG/M |
| 3300033551 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| INPgaii200_11749181 | 2228664022 | Soil | MDTRGYPTRFIKALAISIIAALCSGMVVPASAMPNMPHLFAEHEVARSGGDVAHAGEQYRYRNSSRGYFGDAAGFYGYGRGSSWHQ |
| INPgaii200_11760711 | 2228664022 | Soil | MDVRGYPTRFMKALAISIIAALSSGMAVPASAMPNMPHLFAKHEVASCGGDVAHASEHDRHRNSSRGYSGDAGCNGYGLSSPGYRK |
| JGIcombinedJ26739_1003984552 | 3300002245 | Forest Soil | MDVRGYPTCFRKALAISIIVATLCGGMAVPAWAMPNMPHLFARHEVASCGGDVAHPSKHYLYGNSSRGYSGDAAGCYGYGPSSPLYR* |
| C688J35102_1186377251 | 3300002568 | Soil | MDVPGYVLTVSIVAGLCSGVAAPASALANMPHAFATHEVTRCGGDVAHAGKHHPYQNSSRSYSGSAAGCHGSGRSTPWNPK* |
| C688J35102_1201525132 | 3300002568 | Soil | MDVRGYPTCFMKPLAISIVAALCSGMAVPASALPNTPHAFAKREFARCGGDVAQASKHYRYRNSSCGYSCDAAGCHGYGPSSP* |
| Ga0066388_1001755442 | 3300005332 | Tropical Forest Soil | MDVRGHPTCFRKALAIGIVAALCSGMAVPASAMPNMPHLFARHEVASCGGDVAHPSKDYRYRNSSLGYSGDAAGCYGYEPSSPWYP* |
| Ga0070709_100974051 | 3300005434 | Corn, Switchgrass And Miscanthus Rhizosphere | MGNRGYPTRFMKALAISIIAALCSGMAVPASAMPNMPHLFAKHEVASCGGDVAHASEHDRYRNSSRGYSGDAGCYGYGLSSPGYR* |
| Ga0070713_1000641791 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | MDVRGYPTRFMKALAISVIAALCSGMAVPASAMPNMPHLFAKHEVASCGGDVAHASEHDRYRNSSRGYNSSRGYSGDAGCYGYGLSSPGYR* |
| Ga0070710_109295621 | 3300005437 | Corn, Switchgrass And Miscanthus Rhizosphere | MGNRGYPTRFMKALAISIIAALCSGMAVPASAMPNMPHLFAKHEVASCGGDVAHASEHDRYRNSSRGYNSSRGYSGDAGCYGYGLSSPGYR* |
| Ga0070711_1004058212 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | MDVRGYPICFMKALAISIIAALCSGMAVPASAMPNMPHLFVERHVVRCGGDVAHASKHYRYYSDDAAGCYSHGPSSPWYP* |
| Ga0070711_1010470141 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | MDARGYPTRFMKALAISIIAALSSGMAVPASAMPNMPHLFAKHEVASCGGDVAHAGEHDRYRNSSRGYSGDAGCYGYGLSSPGYR* |
| Ga0066695_100371553 | 3300005553 | Soil | MDVRGYPTCFMKALAISIVAALCSSMAVPASAMPNMPHLFAEHEVVARCSGDVAPASKHYRCRNSSPGYSGNAAGCDGHGPSSPGHPY* |
| Ga0066706_112043761 | 3300005598 | Soil | MDVRGYPTCFMKALAISIVAALCSSMAVPASAMPNMPHLFAEHEVVARCSGDVAPASKHYRCRNSSPGYS |
| Ga0070717_100444433 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | MDVRGYPTRFMKALAISVIAALCSGMAVPASAMPNMPHLFAKHEVASCGGDVAHASEHDRYRNSSRGYSGDAGCYGYGLSSPGYR* |
| Ga0075364_102134582 | 3300006051 | Populus Endosphere | MDTQGYPTRFIKALATSITVALCSGMAVPALAMPNMPHLFAEHEVARSGDAHASEQYRYRNSSRGYSGDATGLYGYPVR* |
| Ga0070712_1002747012 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | MDVRGYPTCFRKALAISIVAALCSGMAVPATAMPNMPHLFAKHEVATCGGDVAHVSHPYRNSSRGYPGDAAACYGYGPGSPWHQ* |
| Ga0070712_1019488441 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | MDVRGYPTRFMKALAISVIAALCSGMAVPASAMPNMPHLFAKHEVASCGGDVAHASEHDRYRNSSRGY |
| Ga0066659_118093501 | 3300006797 | Soil | MDVRGYPTCFMKALAISIVAALCSSMAVPASAMPNMPHLFAEHEVVARCSGDVAPASKHYRCRNSSPGYSGN |
| Ga0075428_1001494834 | 3300006844 | Populus Rhizosphere | MDTRGYPTRFMKALATSIIVALCSGMAMPASAMPNMPHLFAEHEVARSGGAASEQYRYRNSSRGYSGDAAGLYGYPVR* |
| Ga0075428_1013731222 | 3300006844 | Populus Rhizosphere | MDVRRYPICFMKALAISIIAALCSGMAVPASAMPNMPHLFVERQVVRCGGDVAHASKRYRYYSDDTAGCSGHGPNSPWRP* |
| Ga0075421_1009748872 | 3300006845 | Populus Rhizosphere | MDTRGYPTRFIKALAISIIAALCSGMVVPASAMPNMPHLFADEVARSGGDVAHAGEQYRYRNSSRGYSGDAAGFYGYGRGSSWHQ* |
| Ga0075421_1020971102 | 3300006845 | Populus Rhizosphere | MKTLAISIIAALCSGMAVPASAMPNMPHAFAKREVARCGGDVAHRNSSRVHSGDAAGCYGYGPSSPWYYPQ* |
| Ga0075425_1015064392 | 3300006854 | Populus Rhizosphere | MDVRGYPTRFMKALAISIIAALSSGMAVPASAMPNMPHLFAKHEVASCGGDVAHAGEHDRYRNSSRGYSGDAGCYGYGLSSPGYR* |
| Ga0075429_1011535182 | 3300006880 | Populus Rhizosphere | MDTRGYPTRLMKTLAISIIAALCSGMAVPASAMPNMPHLFAEHEVARSGGDVAHASEQYRYRNSSRGYSGDAAGLYGYPVR* |
| Ga0075426_112732291 | 3300006903 | Populus Rhizosphere | MDVRGYPTRFMKALAISVIAALCSGMAVPASAMPNMPHLFAKHEVASCGDYVAHASEHDRYRNSSRGYSGDAGCYGYGLSSPGYR* |
| Ga0075424_1002172743 | 3300006904 | Populus Rhizosphere | MDVRGYPTRFMKALAISVIAALCSGMAGPASAMPNMPHLFAKHEVASCGGDVAHAGEHDRYRNSSRGYSGDAGCYGYGLSSPGYR* |
| Ga0075435_1017552891 | 3300007076 | Populus Rhizosphere | MDVRGYPTRFMKALAISIIAALCSGMAVPASAMPNMPHLFAKHEVATCGGNEPHVSHPYRNSSRGYSGDAAACYGYGPGSPWRQ* |
| Ga0105245_124166262 | 3300009098 | Miscanthus Rhizosphere | MKALAISIIAALSSGMAVPASAMPNMPHLFAKHEVASCGGDVAHAGEHDRYRNSSRGYSGDAGCYGYGLSSPGYR* |
| Ga0075418_105386552 | 3300009100 | Populus Rhizosphere | MKTLAISIIAALCSGMAVPASAMPNMPHAFAKREVARCGGDVAHRNSSRVHSGDAAGCYGYGPSSPWYPQ* |
| Ga0066709_1033057431 | 3300009137 | Grasslands Soil | MKALAISIVAALCSSMAVPASAMPNMPHLFAEHEVVARCSGDVAPASKHYRCRNSSPGYSGNAAGCDGHGPSSPGHPY* |
| Ga0099792_110943112 | 3300009143 | Vadose Zone Soil | MKALAISIIAALCSGMAVPASAMPNMPHLFAKHEVASCAGDVAHASEHDRYRNSSRSYSGDAAGCY |
| Ga0114129_130345201 | 3300009147 | Populus Rhizosphere | MKALAISIIAALCSGMVVPASAMPNMPHLFADEVARSGGDVAHAGEQYRYRNSSRGYSGDAAGFYGYGRGSSWHQ* |
| Ga0114129_131227882 | 3300009147 | Populus Rhizosphere | MKALAISVIAALCSGMAVPASAMPNMPHLFAKHEVASCGDYVAHASEHDRYRNSSRGYSGDATGLYGYPVR* |
| Ga0111538_111515562 | 3300009156 | Populus Rhizosphere | MKALAISVIAALCSGMAVPASAMPNMPHLFAKHEVASCGDYVAHASEHDRYRNSSRGYSGDAGCYGYGLSSPGYR* |
| Ga0105242_110904101 | 3300009176 | Miscanthus Rhizosphere | MKALAISIIAALSSGMAVPASAMPNMPHAFAKREFARCGGDVAQASKHYRYRNSSCGYSCDAAGCHGYGPSSP* |
| Ga0105249_134676691 | 3300009553 | Switchgrass Rhizosphere | QSNRLRASRGKTVMDNRGYPTRFMKALAISIIAALCSLMAVPASAMPNMPHLFAKHEVATCGGDIAHVTHPYRNSSRSYSGDAAACQGYGPGSPRHQ* |
| Ga0127446_10667191 | 3300010104 | Grasslands Soil | MKALAISIVAALCSGMAVPASALPNMEHLFAEREVAHCGGNVAHASHRYRNSSRGYSGDAAGCYGYGLSSPWYP* |
| Ga0134125_102196322 | 3300010371 | Terrestrial Soil | MKALAISIIAALCSGMAVPASAMPNMPHLFAEHEVASCGGDVAHAGEHDRYRNSSRGYSGDAGCYGYGLSSPGYR* |
| Ga0105239_107934142 | 3300010375 | Corn Rhizosphere | VAALCSGMAVPASAMPNMPHLFAKHEVATCGGDIAHVTHPYRNSSRSYSGDAAACQGYGPGSPRHQ* |
| Ga0126383_104560572 | 3300010398 | Tropical Forest Soil | MDIRGYPTCFRKVLAISIVAALCSGMAVPASAMPNMPHLFASHEVVARCGGDVAHASKHYRYRNSSLGYSDDAASCYGYDPSSP* |
| Ga0134121_123927711 | 3300010401 | Terrestrial Soil | MDVRGYPTCFRKALAISIVAALCSGMAVPASAMPNMPHAFAKREVARCGGDVAQASKHYRYQNSSRSYSGDAAGCYGHGPSSPWYPE* |
| Ga0134123_116331052 | 3300010403 | Terrestrial Soil | MKALAISIAAALCIGMAVPASAMPNMPHLFAKHEVATCGGDIAHVTHPYRNSSRGYSGDAGCYGYGLSSPGYR* |
| Ga0137383_103480502 | 3300012199 | Vadose Zone Soil | MKALAISIVAALCSGMAVPASALPNMEHLSAEREVAHCGGNVAHASHQYRNSSRGYSGDAAGCYGYGLSSPWYP* |
| Ga0137380_110579972 | 3300012206 | Vadose Zone Soil | MKALAISIVAALCSGMAVPASALPNMEHLSAEREVADCGGNVAHASHQYRNSSRGYSGDAAGCYGYGLSSPWYP* |
| Ga0150985_1005546632 | 3300012212 | Avena Fatua Rhizosphere | MKPLAISIVAALCSGMAVPASALPNTPHAFAKREFARCGGDVAQASKHYRYRNSSCGYSCDAAGCHGYGPSSP* |
| Ga0137385_102068902 | 3300012359 | Vadose Zone Soil | MKALAISIVAALCSGMAVPASALPNMEHLSAEREVAHCGGNVAHASHRYRNSSRGYSGDAAGCYGYGLSSPWYP* |
| Ga0134043_11126062 | 3300012392 | Grasslands Soil | IVAALCSGMAVPASALPNMEHLFAEREVAHCGGNVAHASHRYRNSSRGYSGDAAGCYGYGLSSPWYP* |
| Ga0134048_10483882 | 3300012400 | Grasslands Soil | MKALAISIVAALCSGMAVPASALPNMEHIFAEREVAHCGGNVAHASHRYRNSSRGYSGDAAGCYGYGLSSPWYP* |
| Ga0134053_11542492 | 3300012406 | Grasslands Soil | MKALAISIVAALCSGMAVPASALPNMEHLFAEREVAHCGGNVAHASHRYRNSSRGYSGDAAGCYGYGLSS |
| Ga0164298_112882232 | 3300012955 | Soil | MDIRGYPTCFRKALAISVVAALCIGMAVPASAMPNMPHLYAKHEVVRCSGDVAHASEHYRYRNSSRGYSGDAAGCSGYGPNSPWYP* |
| Ga0164303_104151041 | 3300012957 | Soil | SAMDIRGYPTCFRKALAISVVAALCIGMAVPASAMPNMPHLYAKHEVVRCSGDVAHASEHYRYRNSSRGYSGDAAGC* |
| Ga0164303_115089181 | 3300012957 | Soil | RFMKALAISIIAALCSGMAVPASAMPNMPHLFAKHEVASCGGDVAHASEHDRYRNSSRGYNSSRGYSGDAGCYGYGLSSPGYR* |
| Ga0164299_108042282 | 3300012958 | Soil | MKALAISVIAALCSGMAVPASAMPNMPHLFAKHEVASCGGDVAHASEHDRYRNSSRGYSGDAGCYGYGLSSPGYR* |
| Ga0164299_115560511 | 3300012958 | Soil | MDIRGYPTCFRKALAISVVAALCIGMAVPASAMPNMPHLYAKHEVVRCSGDVAHASEHYRYRNSSRGYSGDAAGC* |
| Ga0164301_108453271 | 3300012960 | Soil | MKPLAISIVAAVCSGMAVPASALPNTPHAFAKREFARCGGDVAQASKHYRYRNSSCGYSGDAAGGYGYGPSSP |
| Ga0164302_100047445 | 3300012961 | Soil | MKALAISIIAALCSGMAVPASAMPNMPHLFAKHEVASCGGDVAHASEHDRYRNSSRGYSGDAGCYGYGLSSPGYR* |
| Ga0164302_106229931 | 3300012961 | Soil | ALAISVVAALCIGMAVPASAMPNMPHLYAKHEVVRCSGDVAHASEHYRYRNSSRGYSGDAAGC* |
| Ga0164304_117681752 | 3300012986 | Soil | MKPLAISIVAALCSGMAVPASALPNTPHAFAKREFARCGGYVAQASKHYRYRNSSCGYSGDRYGYGPSSP* |
| Ga0163162_116214601 | 3300013306 | Switchgrass Rhizosphere | MKALAISIVAALCSGMAVPASALPNTPHAFAKREFARCGGDVAQASKHYRYRNSSCGCSGDAAGCYGYGPSSP* |
| Ga0132258_101175544 | 3300015371 | Arabidopsis Rhizosphere | MKALVIGIIAALCSGMAVPASAMPNMPHLFAEHEVARSGGDVAHAGEQYRYRNSSRGYSGDAAGFYGYGPSSSRYP* |
| Ga0132258_108370312 | 3300015371 | Arabidopsis Rhizosphere | MDNRGYSTRFMKALAISLIAASCSLTALPASAMPNMPHLFAKHEAATCGGDVAHVTHPYRNSSRGYSAAAAACQGYGPGSPWHQ* |
| Ga0132256_1000348843 | 3300015372 | Arabidopsis Rhizosphere | MKALAISVITALCSGMAVPASAMPNMPHLFAEHEVARSGGDVAHAGEQYRYRNSSRGYSGDAAGFYGYGPSSSRYP* |
| Ga0132256_1004423292 | 3300015372 | Arabidopsis Rhizosphere | MKALAISLIAASCSLTALPASAMPNMPHLFAKHEAATCGGDVAHVTHPYRNSSRGYSAAAAACQGYGPGSPWHQ* |
| Ga0132256_1008285402 | 3300015372 | Arabidopsis Rhizosphere | MKALATSIIVALCSGMAMPASAMPNMPHLFAEHEVARSGGDVAHASEQYRYRNSSRGYSGDAAGLYGYPVR* |
| Ga0132256_1010065852 | 3300015372 | Arabidopsis Rhizosphere | MKALATSIVIALCSGMAVPASAMPNMPHLFADEVARSGGDVAHAGEQYRYRNSSRGYSGDAAGFYGYGRGSSWHQ* |
| Ga0132257_1017547742 | 3300015373 | Arabidopsis Rhizosphere | AALCSGMVVPASAMPNMPHLFADEVARSGGDVAHAGEQYRYRNSSRGYSGDAAGFYGYGRGSSWHQ* |
| Ga0132257_1022300372 | 3300015373 | Arabidopsis Rhizosphere | MDTRGYPTRFIKALAISIIAALCSGMAVPASALPNTPHAFAKREFARYGGDVAQASKHYRYRNSSCGYSCDAAGCHGYGPSSP* |
| Ga0132255_1019862281 | 3300015374 | Arabidopsis Rhizosphere | SIIAALCSGMVVPASAMPNMPHLFADEVARSGGDVAHAGEQYRYRNSSRGYSGDAAGFYGYGRGSSWHQ* |
| Ga0132255_1032826532 | 3300015374 | Arabidopsis Rhizosphere | MKALATSIVVALCSGMAVPASAMPNMPHLFADEVARSGAHASEQYRYRNSSRGYSGDAAGLY |
| Ga0163161_100647613 | 3300017792 | Switchgrass Rhizosphere | MDVRGYPTCFMKAFAISIVAALCSGIAVPASALPNTPHAFAKREFARCGGDVAQASKHYRYRNSSCGYSGDAAGCHGYGPSSP |
| Ga0184624_100969372 | 3300018073 | Groundwater Sediment | MDVRGHTTCFMKALGISIVVAALCGMAVPASAMPNMPHLFASEVARCGGDVAHASKHHRYRNSSRSYSGDVC |
| Ga0066655_103148221 | 3300018431 | Grasslands Soil | MDVRGYPTCFMKALAISIVAALCSSMAVPASAMPNMPHLFAEHEVVARCSGDVAPASKHYRCRNSSPGYSGNAAGCDGHGPSSPGHPY |
| Ga0066662_107122312 | 3300018468 | Grasslands Soil | MSAEAQQRTDCLDVRGYPTRFMKALAISVIAALCSGMAVPASAMPNMPHLFAKHEVASCGGDVAHASQHDRYRNSSRGYSGDAGCYGYGLSSPRVR |
| Ga0190270_123978761 | 3300018469 | Soil | MDVRGYALTISIVAALCSGMAGPASAMPNMPHAFAKREVARCGGDVSQASKHYRYQNSSRSYSGDAAGCYGYGPSSPSYPE |
| Ga0210407_100984211 | 3300020579 | Soil | MDIRGYPTCFRKALAISVVAALCIGMAVPASAMPNMPHLYAKHEVVRCSGDVAHASEHYRYRNSSRGYSGDAAGC |
| Ga0210399_109977632 | 3300020581 | Soil | MDVRGYPTCFMKGLAISIVAVVCGGMAVPASAMPNMPHLFAEHAVVTRCGGDVAPASKHYRYRNSFPGYSGNAAACDGHGPSS |
| Ga0210406_107455932 | 3300021168 | Soil | MDVRGYPTCFMKGLAISIVAVVCGGMAVPASAMPNMPHLFAEHAVVTRCGGDVAPASKQYRYRNSSPGYSGNAAGCDGHGPSSPGHPY |
| Ga0210408_104016631 | 3300021178 | Soil | MDVRGYPTYFRKALAIGIVAALCSGMAVPASAMPNMPHLFAEHEVVARCGGDTAHARKHYLYGNSSRGNSSDAAGCYRYGPSSPLYR |
| Ga0210402_112758672 | 3300021478 | Soil | MDIRGYPTCFRKALAISVVAALCIGMAVPASAMPNMPHLFAKHEVASCGRDVAHASEHDRYRNSSRGYSGDAAGC |
| Ga0242654_103990001 | 3300022726 | Soil | SRRAADRLKLTESAMDIRGYPTCFRKALAISVVAALCIRMAVPASAMPNMPHLYAKHEVVRCSGDVAHASEHYRYRNSSRGYSGDAAGC |
| Ga0207685_100773361 | 3300025905 | Corn, Switchgrass And Miscanthus Rhizosphere | MDARGYPTRFMKALAISIIAALSSGMAVPASAMPNMPHLFAKHEVASCGGDVAHASEHDRYRNSSRGYSGD |
| Ga0207693_101797312 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | MDVRGYPTRFMKALAISIIAALCSGMAVPASAMPNMPHLFAKHEVASCGGDVAHASEHDRYRNSSRGYSGDAGCYGYGLSSPGYR |
| Ga0207693_104835771 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | MDNRGYPTRFMKALAISIIAALCSLMAVPASAMPNMPHLFAKHEVATCGGDIAHVTHPYRNSSRSYSGDAAACQGYGPGSPRHQ |
| Ga0207693_109424031 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | MDVRGYPTCFRKALAISIVAALCSGMAVPATAMPNMPHLFAKHEVATCGGDVAHVSHPYRNSSRGYPGDAA |
| Ga0207700_107667091 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | MDVRGYPTRFMKALAISVIAALCSGMAVPASAMPNMPHLFAKHEVASCGGDVAHASEHDRYRNSSRGYNSSRGYSGDAGCYGYGLSSPGYR |
| Ga0207664_111492301 | 3300025929 | Agricultural Soil | MGNRGYPTRFMKALAISIIAALCSGMAVPASAMPNMPHLFAKHEVASCGGDVAHASEHDRYRNSSRGYNSSRGYSGDAGCYGYGLSSPGYR |
| Ga0209329_11209981 | 3300027605 | Forest Soil | LKETAMDVRGYPTCFRKALAISIIVATLCGGMAVPAWAMPNMPHLFARHEVASCGGDVAHPSKHYLYGNSSRGYSGDAAGCYGYGPSSPLYR |
| Ga0209488_102987833 | 3300027903 | Vadose Zone Soil | ENASLRLKEIAMDVRGYPTCFMKALAISIVAALCSGMAVPASAMPNMPHLFAEHEVVARCSGDVAPASKHYRYRNSSRGYSGDAGCYGYGLSSPGYR |
| Ga0209488_112379622 | 3300027903 | Vadose Zone Soil | MDNRGYPTRFMKALAISIIAALCSGMAVPASAMPNMPHLFAKHEVASCAGDVAHASEHDRYRNSSRSYSGDAAGCYGYG |
| Ga0209382_110139072 | 3300027909 | Populus Rhizosphere | RFMKALAISIIAALCSGMVVPASAMPNMPHLFADEVARSGGDVAHAGEQYRYRNSSRGYSGDAAGFYGYGRGSSWHQ |
| Ga0209382_122192012 | 3300027909 | Populus Rhizosphere | MKTLAISIIAALCSGMAVPASAMPNMPHAFAKREVARCGGDVAHRNSSRVHSGDAAGCYGYGPSSPWYYPQ |
| Ga0209526_102909682 | 3300028047 | Forest Soil | MDVRGYPTCFRKALAISIIVATLCGGMAVPAWAMPNMPHLFARHEVASCGGDVAHPSKHYLYGNSSRGYSGDAAGCYGYGPSSPLYR |
| Ga0307277_100027604 | 3300028881 | Soil | MGNRGYPTRFMKALAISIIAAVSSGMAVPASAMPNMPHLFPKHEVASCGGGVAHASEHDRYRNSSRGYSGDAGCYGYGLSSPGYR |
| Ga0318493_104429562 | 3300031723 | Soil | MDVRGYPTCFMKALATSIVAALCSSMAVPASAMPNMPHLFAEHAVVTRCGGDVAPASKHYRYRNSFPGYSGNAAACDGHGPSSPGHPY |
| Ga0307468_1000479544 | 3300031740 | Hardwood Forest Soil | MDVRGYPTCFMKALAISIVAALCSGMAVPASALPNTPHAFAKREFARCGGDVAQASKHYRYRNSSCGYSCDAAGCHGYGPSSP |
| Ga0306918_108364132 | 3300031744 | Soil | LKEIAMDVRGYPTCFMKALATSIVAALCSSMAVPASAMPNMPHLFAEHAVVTRCGGDVAPASKHYRYRNSFPGYSGNAAACDGHGPSSPGHPY |
| Ga0307470_111523372 | 3300032174 | Hardwood Forest Soil | MDTRGYPTRFMKALAISIIAALCSGMVVPASAMPNMPHLFADEVARSGGDVAHAGEQYRYRNSSRGYSGDAAGLYGYPVR |
| Ga0307471_1003164632 | 3300032180 | Hardwood Forest Soil | MDTRGYPTRFMKALATSIIVALCSGMAMPASAMPNMPHLFAEHEVARSGGAHASEQYRYRNSSRGYSGDATGLYGYPVR |
| Ga0307471_1021432781 | 3300032180 | Hardwood Forest Soil | MDIRGYPTCFRKALAISVVAALCIGMAVPASAMPNMPHLYAKHEVVRCGGDVAHASEHYRYRNSSRGYSGDAAGC |
| Ga0247830_115114681 | 3300033551 | Soil | MDVRGYPTCFMKPLAISIVAALCSGMAVPASALPNTPHAFAKREFARCGGHVAQASKHYRYRNSSCGYSGDAAGAATATGRALPEADRI |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |