NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F105755

Metagenome Family F105755

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F105755
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 105 residues
Representative Sequence LIRPLVVLLLLTALPACTVNVRRYAFNAALENQKHIDKLRIGQTLAEVERIMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRSASWESD
Number of Associated Samples 86
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 52.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 60.00 %
Associated GOLD sequencing projects 73
AlphaFold2 3D model prediction Yes
3D model pTM-score0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(13.000 % of family members)
Environment Ontology (ENVO) Unclassified
(52.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(60.000 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 30.83%    β-sheet: 8.27%    Coil/Unstructured: 60.90%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.45
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF08239SH3_3 5.00
PF13302Acetyltransf_3 3.00
PF10543ORF6N 2.00
PF14559TPR_19 2.00
PF01431Peptidase_M13 2.00
PF01850PIN 2.00
PF01678DAP_epimerase 2.00
PF05649Peptidase_M13_N 2.00
PF00106adh_short 1.00
PF07452CHRD 1.00
PF01242PTPS 1.00
PF14622Ribonucleas_3_3 1.00
PF01734Patatin 1.00
PF11006DUF2845 1.00
PF02705K_trans 1.00
PF00535Glycos_transf_2 1.00
PF07992Pyr_redox_2 1.00
PF16363GDP_Man_Dehyd 1.00
PF03544TonB_C 1.00
PF08482HrpB_C 1.00
PF01554MatE 1.00
PF13478XdhC_C 1.00
PF09699Paired_CXXCH_1 1.00
PF13414TPR_11 1.00
PF13692Glyco_trans_1_4 1.00
PF01061ABC2_membrane 1.00
PF06971Put_DNA-bind_N 1.00
PF00109ketoacyl-synt 1.00
PF02811PHP 1.00
PF03100CcmE 1.00
PF00691OmpA 1.00
PF04250DUF429 1.00
PF07719TPR_2 1.00
PF02738MoCoBD_1 1.00
PF00933Glyco_hydro_3 1.00
PF02146SIR2 1.00
PF01137RTC 1.00
PF01182Glucosamine_iso 1.00
PF03918CcmH 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG3590Predicted metalloendopeptidasePosttranslational modification, protein turnover, chaperones [O] 4.00
COG0253Diaminopimelate epimeraseAmino acid transport and metabolism [E] 2.00
COG03636-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminaseCarbohydrate transport and metabolism [G] 1.00
COG0430RNA 3'-terminal phosphate cyclaseRNA processing and modification [A] 1.00
COG07206-pyruvoyl-tetrahydropterin synthaseCoenzyme transport and metabolism [H] 1.00
COG0810Periplasmic protein TonB, links inner and outer membranesCell wall/membrane/envelope biogenesis [M] 1.00
COG0846NAD-dependent protein deacetylase, SIR2 familyPosttranslational modification, protein turnover, chaperones [O] 1.00
COG1472Periplasmic beta-glucosidase and related glycosidasesCarbohydrate transport and metabolism [G] 1.00
COG1643HrpA-like RNA helicaseTranslation, ribosomal structure and biogenesis [J] 1.00
COG1752Predicted acylesterase/phospholipase RssA, containd patatin domainGeneral function prediction only [R] 1.00
COG2332Cytochrome c biogenesis protein CcmEPosttranslational modification, protein turnover, chaperones [O] 1.00
COG2410Predicted nuclease (RNAse H fold)General function prediction only [R] 1.00
COG3088Cytochrome c-type biogenesis protein CcmH/NrfFPosttranslational modification, protein turnover, chaperones [O] 1.00
COG3158K+ uptake protein KupInorganic ion transport and metabolism [P] 1.00
COG3621Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotRGeneral function prediction only [R] 1.00
COG4667Predicted phospholipase, patatin/cPLA2 familyLipid transport and metabolism [I] 1.00

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms100.00 %
UnclassifiedrootN/A0.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2124908006|FWIROz_GJ87FRN02J5E0CAll Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium519Open in IMG/M
3300001991|JGI24743J22301_10031908All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1039Open in IMG/M
3300002568|C688J35102_120936261All Organisms → cellular organisms → Bacteria2582Open in IMG/M
3300002568|C688J35102_120945469All Organisms → cellular organisms → Bacteria → Proteobacteria2765Open in IMG/M
3300004081|Ga0063454_100843322All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium715Open in IMG/M
3300004153|Ga0063455_100177673All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1020Open in IMG/M
3300005327|Ga0070658_10009787All Organisms → cellular organisms → Bacteria → Proteobacteria7699Open in IMG/M
3300005329|Ga0070683_100537501All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1117Open in IMG/M
3300005331|Ga0070670_100000111All Organisms → cellular organisms → Bacteria76659Open in IMG/M
3300005331|Ga0070670_100223791All Organisms → cellular organisms → Bacteria1637Open in IMG/M
3300005331|Ga0070670_100873257All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium814Open in IMG/M
3300005336|Ga0070680_100258498All Organisms → cellular organisms → Bacteria1473Open in IMG/M
3300005343|Ga0070687_100715970All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium701Open in IMG/M
3300005345|Ga0070692_10008462All Organisms → cellular organisms → Bacteria4592Open in IMG/M
3300005439|Ga0070711_101480783All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium592Open in IMG/M
3300005535|Ga0070684_100115868All Organisms → cellular organisms → Bacteria2407Open in IMG/M
3300005539|Ga0068853_100075376All Organisms → cellular organisms → Bacteria2944Open in IMG/M
3300005546|Ga0070696_100221720All Organisms → cellular organisms → Bacteria1419Open in IMG/M
3300005564|Ga0070664_100931221All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium815Open in IMG/M
3300005564|Ga0070664_101827086All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium576Open in IMG/M
3300005578|Ga0068854_100012007All Organisms → cellular organisms → Bacteria5661Open in IMG/M
3300005578|Ga0068854_100016648All Organisms → cellular organisms → Bacteria → Proteobacteria4906Open in IMG/M
3300005836|Ga0074470_11158307All Organisms → cellular organisms → Bacteria7396Open in IMG/M
3300006173|Ga0070716_100411123All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium976Open in IMG/M
3300006237|Ga0097621_100128444All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2155Open in IMG/M
3300006358|Ga0068871_100638909All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium971Open in IMG/M
3300006854|Ga0075425_100028174All Organisms → cellular organisms → Bacteria6217Open in IMG/M
3300006871|Ga0075434_102082648All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium572Open in IMG/M
3300006904|Ga0075424_100917362All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium934Open in IMG/M
3300006914|Ga0075436_100205335All Organisms → cellular organisms → Bacteria1396Open in IMG/M
3300009098|Ga0105245_10000033All Organisms → cellular organisms → Bacteria148617Open in IMG/M
3300009148|Ga0105243_10107711All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2325Open in IMG/M
3300009176|Ga0105242_11970265All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobulbaceae → Desulfobulbus → unclassified Desulfobulbus → Desulfobulbus sp.626Open in IMG/M
3300010373|Ga0134128_12606062All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium557Open in IMG/M
3300010400|Ga0134122_13144696All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium517Open in IMG/M
3300010401|Ga0134121_10147028All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2007Open in IMG/M
3300011119|Ga0105246_10106367All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2052Open in IMG/M
3300012208|Ga0137376_10484831All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1073Open in IMG/M
3300012924|Ga0137413_11341909All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium575Open in IMG/M
3300012955|Ga0164298_10969265All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium625Open in IMG/M
3300012958|Ga0164299_10584359All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium760Open in IMG/M
3300012977|Ga0134087_10328657All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium724Open in IMG/M
3300013105|Ga0157369_10002039All Organisms → cellular organisms → Bacteria24348Open in IMG/M
3300013296|Ga0157374_10000005All Organisms → cellular organisms → Bacteria646767Open in IMG/M
3300013297|Ga0157378_10000904All Organisms → cellular organisms → Bacteria27354Open in IMG/M
3300013308|Ga0157375_10000009All Organisms → cellular organisms → Bacteria366440Open in IMG/M
3300013308|Ga0157375_10000396All Organisms → cellular organisms → Bacteria39655Open in IMG/M
3300014157|Ga0134078_10430218All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium599Open in IMG/M
3300014325|Ga0163163_10095597All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2991Open in IMG/M
3300014745|Ga0157377_10629103All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium769Open in IMG/M
3300014969|Ga0157376_10000003All Organisms → cellular organisms → Bacteria568634Open in IMG/M
3300014969|Ga0157376_10886683All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium909Open in IMG/M
3300015051|Ga0137414_1239577All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1343Open in IMG/M
3300015158|Ga0167622_1000896All Organisms → cellular organisms → Bacteria12806Open in IMG/M
3300015242|Ga0137412_10712514All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium746Open in IMG/M
3300015264|Ga0137403_10430095All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1197Open in IMG/M
3300019877|Ga0193722_1015705All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1947Open in IMG/M
3300021289|Ga0213903_112013All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium500Open in IMG/M
3300021358|Ga0213873_10000003All Organisms → cellular organisms → Bacteria973849Open in IMG/M
3300021358|Ga0213873_10008077All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2135Open in IMG/M
3300021363|Ga0193699_10092117All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1217Open in IMG/M
3300023046|Ga0233356_1000011All Organisms → cellular organisms → Bacteria94968Open in IMG/M
3300023268|Ga0247765_1066182All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium751Open in IMG/M
3300024177|Ga0247686_1000007All Organisms → cellular organisms → Bacteria51761Open in IMG/M
3300024224|Ga0247673_1041269All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium647Open in IMG/M
3300024245|Ga0247677_1007073All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1543Open in IMG/M
3300024279|Ga0247692_1031124All Organisms → cellular organisms → Bacteria819Open in IMG/M
3300024283|Ga0247670_1000655All Organisms → cellular organisms → Bacteria7590Open in IMG/M
3300024286|Ga0247687_1010182All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1255Open in IMG/M
3300024323|Ga0247666_1000156All Organisms → cellular organisms → Bacteria28856Open in IMG/M
3300024323|Ga0247666_1032872All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1078Open in IMG/M
3300024331|Ga0247668_1005638All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2675Open in IMG/M
3300025909|Ga0207705_10399468All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1063Open in IMG/M
3300025916|Ga0207663_11274398All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium592Open in IMG/M
3300025921|Ga0207652_11497479All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium579Open in IMG/M
3300025924|Ga0207694_10000001All Organisms → cellular organisms → Bacteria4078485Open in IMG/M
3300025925|Ga0207650_10000114All Organisms → cellular organisms → Bacteria105111Open in IMG/M
3300025925|Ga0207650_10030558All Organisms → cellular organisms → Bacteria3881Open in IMG/M
3300025925|Ga0207650_10217089All Organisms → cellular organisms → Bacteria1538Open in IMG/M
3300025927|Ga0207687_10000006All Organisms → cellular organisms → Bacteria641680Open in IMG/M
3300025927|Ga0207687_10001039All Organisms → cellular organisms → Bacteria18869Open in IMG/M
3300025934|Ga0207686_11797066All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium507Open in IMG/M
3300025935|Ga0207709_10150298All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1612Open in IMG/M
3300025941|Ga0207711_10991809All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium779Open in IMG/M
3300025942|Ga0207689_10010650All Organisms → cellular organisms → Bacteria7914Open in IMG/M
3300025944|Ga0207661_10000006All Organisms → cellular organisms → Bacteria537727Open in IMG/M
3300025945|Ga0207679_11318417All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium662Open in IMG/M
3300025945|Ga0207679_11577244All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium602Open in IMG/M
3300025981|Ga0207640_10008559All Organisms → cellular organisms → Bacteria → Proteobacteria5681Open in IMG/M
3300026023|Ga0207677_10000127All Organisms → cellular organisms → Bacteria62474Open in IMG/M
3300026320|Ga0209131_1291833All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium612Open in IMG/M
3300027326|Ga0209731_1070818All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium541Open in IMG/M
3300027459|Ga0207505_103166All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1012Open in IMG/M
3300027461|Ga0207601_106939All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium716Open in IMG/M
3300028145|Ga0247663_1024794All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium925Open in IMG/M
3300028281|Ga0247689_1046786All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium605Open in IMG/M
3300031199|Ga0307495_10263947All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium501Open in IMG/M
3300031366|Ga0307506_10042395All Organisms → cellular organisms → Bacteria1283Open in IMG/M
3300031366|Ga0307506_10101679All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium943Open in IMG/M
3300034268|Ga0372943_0943132All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium574Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil13.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil8.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere8.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere7.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere6.00%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere6.00%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil5.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere5.00%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere5.00%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil4.00%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere4.00%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere4.00%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil3.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil2.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere2.00%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere2.00%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere2.00%
Sediment (Intertidal)Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.00%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil1.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.00%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil1.00%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere1.00%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter1.00%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere1.00%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere1.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.00%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.00%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.00%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2124908006Soil microbial communities from sample at FACE Site Metagenome WIR_Oz2EnvironmentalOpen in IMG/M
3300001991Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2Host-AssociatedOpen in IMG/M
3300002568Grasslands soil microbial communities from Hopland, California, USA - 2EnvironmentalOpen in IMG/M
3300004081Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)EnvironmentalOpen in IMG/M
3300004153Grasslands soil microbial communities from Hopland, California, USA (version 2)EnvironmentalOpen in IMG/M
3300005327Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaGHost-AssociatedOpen in IMG/M
3300005329Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaGEnvironmentalOpen in IMG/M
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005336Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaGEnvironmentalOpen in IMG/M
3300005343Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaGEnvironmentalOpen in IMG/M
3300005345Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaGEnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005535Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaGEnvironmentalOpen in IMG/M
3300005539Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2Host-AssociatedOpen in IMG/M
3300005546Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaGEnvironmentalOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005578Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2Host-AssociatedOpen in IMG/M
3300005836Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBBEnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012955Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MGEnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300012977Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300013105Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaGHost-AssociatedOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014157Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014745Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaGHost-AssociatedOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015051Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015158Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G1A, Ice margin)EnvironmentalOpen in IMG/M
3300015242Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015264Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300019877Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1EnvironmentalOpen in IMG/M
3300021289Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States ? Hobet_Cave_3EnvironmentalOpen in IMG/M
3300021358Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3Host-AssociatedOpen in IMG/M
3300021363Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2EnvironmentalOpen in IMG/M
3300023046Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MSEnvironmentalOpen in IMG/M
3300023268Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L106-311C-6EnvironmentalOpen in IMG/M
3300024177Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK27EnvironmentalOpen in IMG/M
3300024224Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK14EnvironmentalOpen in IMG/M
3300024245Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK18EnvironmentalOpen in IMG/M
3300024279Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK33EnvironmentalOpen in IMG/M
3300024283Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK11EnvironmentalOpen in IMG/M
3300024286Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK28EnvironmentalOpen in IMG/M
3300024323Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07EnvironmentalOpen in IMG/M
3300024331Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK09EnvironmentalOpen in IMG/M
3300025909Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025921Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025924Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025925Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025927Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025934Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025935Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025942Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025944Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025981Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026023Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300027326Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027459Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE17-A (SPAdes)EnvironmentalOpen in IMG/M
3300027461Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE15-E (SPAdes)EnvironmentalOpen in IMG/M
3300028145Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK04EnvironmentalOpen in IMG/M
3300028281Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK30EnvironmentalOpen in IMG/M
3300031199Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_SEnvironmentalOpen in IMG/M
3300031366Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_SEnvironmentalOpen in IMG/M
3300034268Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
FWIROz_083395702124908006SoilMPRLTRSIIVLFLLTTTQACAVYVPRYAFEASLTNQKNIDRLRVGQTLSEVQRIMGKPPERRNAHVRFDGISIEEWSYITDYVRKMDTTITFVGGKV
JGI24743J22301_1003190813300001991Corn, Switchgrass And Miscanthus RhizosphereLRLIRPLAVLLLSVSLPACTVNVRRYAFNAALENQKHIDKLHIGQTLAEVERIMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRAAPWESD*
C688J35102_12093626143300002568SoilMRLIRPLVVLLLLAMLPGCTVNVRRYAFNAALENQKHIDKLRIGQTLSEVERIMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRAAPWESD*
C688J35102_12094546943300002568SoilMLSACTVNVRRYAFNAALENQKHIDKLRIGQTLSEVERIMGKPPERRNSHVRFDGISIEEWSYISDYVRRMDTTITFVGGKVDEIRAAPWESD*
Ga0063454_10084332213300004081SoilMRLIRPLVVLLLLAMLPGCTVNVRRYAFNAALENQKHIDKLHIGQTLAEVERVMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRAAPWE
Ga0063455_10017767323300004153SoilMRLIRPLVVLLVLAMLPACTVNVRRYAFNAALENQKHIDKLRIGQTLSEVERIMGKPPERRNAHVRFDGISIEEWSYISDYVRRMDTTITFVGGKVDEIRAAPWESD*
Ga0070658_1000978783300005327Corn RhizosphereLRLTRTIAVLFLLITLPACTVSVPRYAFEQALRNQQNVDKLRIGQTLAEVQKVMGKPPERRNAHVRFDGISIEEWSYITDYVRKMDTTITFVGGKVDEIRSAAWESD*
Ga0070683_10053750123300005329Corn RhizosphereVRRLQWAAVLAAALLLPRCTVSVSRYAFETALKNQANIDRIRIGQTLAEVQKIMGKPPERRSAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIHAAKWDAD*
Ga0070670_100000111433300005331Switchgrass RhizosphereVNVRRYAFNAALENQKHIDKLRIGQTLAEVERIMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRSASWESD*
Ga0070670_10022379123300005331Switchgrass RhizosphereMLPACTVNVRRYAFNAALENQKHIDKLHIGQTLAEVERVMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRAAPWESD*
Ga0070670_10087325713300005331Switchgrass RhizosphereLRLIRPLIVLLCLATLPACTVNVRRYAFNAALENQKHIDKLHIGQTLAEVERVMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRAAPWGSD*
Ga0070680_10025849823300005336Corn RhizosphereLRLIAVLLLLLTIPACTVSVPRYAFEQSLRNQQNVDKLRIGQTLSEVQRIMGKPPERRNAHVRFDGISIEEWSYITDYVRKMDTTITFVGGKVDEIRSAKWESD*
Ga0070687_10071597013300005343Switchgrass RhizosphereMVLTRRAAALLATVVLLQGCMCVPLHAFHAAVENQAHIDKLRIGQTLAEVQRIMGKPPERRNARVRFDGISIEEWSYITDYVRKQDTTITFVGGKVDEIRATSWAVD*
Ga0070692_1000846243300005345Corn, Switchgrass And Miscanthus RhizosphereMLRLIRPLAVLLLSVSLPACTVNVRRYAFNAALENQKHIDKLHIGQTLAEVERIMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRAAPWESD*
Ga0070711_10148078323300005439Corn, Switchgrass And Miscanthus RhizosphereMVLARRAALAALLVCTSCVVVPLHAFRAAAENQARIDKLRIGQTLAEVQRIMGKPPERRNARVRFDGISIEEWGYITDYVRKQDTTITFVGGKVEEIQTTPWEKD*
Ga0070684_10011586843300005535Corn RhizosphereLRLIRPLVVLLLLTALPACTVNVRRYAFNAALENQKHIDKLRIGQTLAEVERLMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRSASWESD*
Ga0068853_10007537613300005539Corn RhizosphereSVPRYAFEQALRNQQNVDKLRIGQTLAEVQKVMGKPPERRNAHVRFDGISIEEWSYITDYVRKMDTTITFVGGKVDEIRSAAWESD*
Ga0070696_10022172023300005546Corn, Switchgrass And Miscanthus RhizosphereVACLLSGCAVYVPRYAFHAALENQQRINQLRMGQTLAEVERIMGKGPERRHARLRFDGVSIEEWSYASDPVRKLDTVITFVGGKVNEINTAPWGGRESD*
Ga0070664_10093122123300005564Corn RhizosphereLRLIRPLVVLLLLTALPACTVNVRRYAFNAALENQKHIDKLRIGQTLAEVERIMGKPPERRNAHVRFDGISIEEWSYVTDYVRRMDTTITFVGGKVDEIRSASWESD*
Ga0070664_10182708613300005564Corn RhizosphereTRAGISLLFLLLLGMLLPGCTVNVRRYAFNAALENQKHIDKLHIGQTLAEVERVMGKPPERRNAHVRFDGISIEEWSYITDYLRHMDTTITFVGGKVDEIRAAPWESD*
Ga0068854_10001200783300005578Corn RhizosphereLVLIPSHPRRTPAGIWLVFLLLLVALPACTVNVRRYAFNTALENQRHIDKLRIGQTLSEVERIMGKGPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRAAPWESD*
Ga0068854_10001664843300005578Corn RhizosphereLRLIRPLVVLFVLVTLPACTVNVRRYAFNAALENQKHIDKLRIGQTLAEVERIMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRSASWESD*
Ga0074470_1115830743300005836Sediment (Intertidal)MRRLIFVLAALLVLDACVCIPRYAFQRALENQARVDRLRIGQTLAEVEAVMGRPPERRSTRLRFDGLSIEEWSYLTDYVRKMDTTITFVGGKVDEIGSASWEQD*
Ga0070716_10041112323300006173Corn, Switchgrass And Miscanthus RhizosphereMVLTRRAAALLAALLLLDGCVCVPLVAFRAATRNQARIDRLRIGQTLAEVQKVMGKPPERRNARVRFDGISIEEWSYLTDYVRKQDTTITFVGGKVDEIRATSWEVD*
Ga0097621_10012844423300006237Miscanthus RhizosphereMLPACTVNVRRYAFNAALENQKHIDKLRIGQTLAEVERIMGKPPERRNAHVRFDGISIEEWSYITDYVRKMDTTITFVGGKVDEIRSAAWEVD*
Ga0068871_10063890933300006358Miscanthus RhizosphereLRLIRPLVVLFVVVTLPACTVNVRRYAFNAALENQKHIDKLRIGQTLAEVERIMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRSASWESD*
Ga0075425_10002817453300006854Populus RhizosphereMVLIRRATSLLFALVLANACVCVPLHAFRAAQENQARIDKLRIGQTLAEVQKIMGKPPERRNARVRFDGISIEEWSYVTDYMRKQDTTITFVGGKVDEIRATPWEVD*
Ga0075434_10208264813300006871Populus RhizosphereVPGADQSGRKRMVLTRRAAALLVTLVLFQGCMCIPLHAFHAAMQNQAHIDKLRIGQTLAEVQRIMGKPPERRNARVRFDGISIEEWSYITDYVRKQDTTITFVGGKVDEIRATSWAVD*
Ga0075424_10091736223300006904Populus RhizosphereMVLTRRAAALLVTLVLFQGCMCIPLHAFHAAMQNQAHIDKLRIGQTLAEVQRIMGKPPERRNARVRFDGISIEEWSYITDYVRKQDTTITFVGGKVDEIRATSWAVD*
Ga0075436_10020533513300006914Populus RhizosphereRRATSLLFALVLADACVCVPLHAFRAAEQNQARIDKLRIGQTLAEVQRIMGKPPERRNARVRFDGISIEEWSYVTDYVRKQDTTITFVGGKVDEIRATSWEVD*
Ga0105245_10000033193300009098Miscanthus RhizosphereLIRPLIVLLFVFTASACTVNVRRYAFNAALENQKHIDKLHIGQTLAEVERVMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRSAPWESD*
Ga0105243_1010771113300009148Miscanthus RhizosphereMFRVISVLLLLITIPACTVSVPRYAFEQALRNQQNVDKLRIGQTLAEVQKVMGKPPERRNAHVRFDGISIEEWSYITDYVRKMDTTITFVGGKVDEIRSAAWESD*
Ga0105242_1197026513300009176Miscanthus RhizospherePGRERMVLRLRAAALLAALLFVDGCVCVPLHAFRAAAENQAHIDKLRIGQTLAEVQRIMGKPPERRNARVRFDGISIEEWSYITDYVRKQDTTITFVGGKVDEIRATSWEKD*
Ga0134128_1260606213300010373Terrestrial SoilLIRPLVVFFLLTTLPACTVNVRRYAFNAALENQKHIDKLRIGQTLSEVERIMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRSASWESD*
Ga0134122_1314469613300010400Terrestrial SoilLVLIPLDPRRNPAGIWLAVLLLLAALPACTVNVRRYAFNAALENQKHIDKLRIGQTLAEVERIMGKPPERRNAHVRFDGISIEEWSYITDYVRHMDTTITFVGGKVDEIRSAPWESD*
Ga0134121_1014702813300010401Terrestrial SoilVACLLSGCAVYVPRYAFHAALENQQRINQLRMGQTLAEVERIMGKGPERRHARLRFDGVSIEEWSYASDPVRKLDTVITFVGGKVNEINTAPW
Ga0105246_1010636723300011119Miscanthus RhizosphereLRLIAVLLLLITIPACTVSVPRYAFEQALRNQQNVDKLRIGQTMAEVQRTMGKPPERRNAHVRFDGISIEEWSYITDYVRKMDTTITFVGGKVDEIRSAAWEVD*
Ga0137376_1048483113300012208Vadose Zone SoilMSLVFLFLLTTLPACTVNVRRYAFNAALENQKHIDKLHIGQTLAEVERVMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRAVPWESD*
Ga0137413_1134190913300012924Vadose Zone SoilMPACTVYVPRYAFQAALTNQKNIDRLRVGQTLAEVQRIMGQPPERRNAHVRFDGISIEEWSYISDYVRKMDTTITFVGGKVDEVRTAKWETD*
Ga0164298_1096926523300012955SoilLVLIRLDPRRNPAGISLVILVLLTILPGCTVNVRRYAFNAALENQKHIDKLRIGQTMAEVERIMGKGPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRAAPWESD*
Ga0164299_1058435913300012958SoilTPAGISLIFLVLLAMLPACTVNVRRYAFNAALENQKHIDKLRIGQTLAEVERIMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRSARWESD*
Ga0134087_1032865713300012977Grasslands SoilAGESRRQRLVLSEIQSIHVRNPRRNPAGISVFRSRTLRLIAVLLLLITMPACTVSVPRYAFEQALSNQQNVDKLRIGQTLFEVQRIMGKPPERRNAHVRFDGISIEEWSYITDYVRKMDTTITFVGGKVDEIRSAAWEVD*
Ga0157369_1000203983300013105Corn RhizosphereLIRPLVVLLLLTALPACTVNVRRYAFNAALENQKHIDKLRIGQTLAEVERIMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRSASWESD*
Ga0157374_100000054943300013296Miscanthus RhizosphereLVLIPSHPRRTPAGIWLVFLLLLVALPGCTVNVRRYAFNTALENQRHIDKLRIGQTLSEVERIMGKGPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRAAPWESD*
Ga0157378_1000090423300013297Miscanthus RhizosphereMFRVISVLLLLITIPACTVSVPRYAFEQALRNQQNVDKLRIGQTLAEVQKVMGKPPERRNAHVRFDGISIEEWSYITDYVRKMDTTITFVGGKVDEIRSAKWESD*
Ga0157375_10000009323300013308Miscanthus RhizosphereLRLTRTIAVLFLLLTIPACTVSVPRYAFEQALRNQQNVDKLRIGQTLAEVQKVMGKPPERRNAHVRFDGISIEEWSYITDYVRKMDTTITFVGGKVDEIRSAAWESD*
Ga0157375_1000039673300013308Miscanthus RhizosphereMAMLPACTVNVRRYAFNTALENQKHIDKLRIGQTLAEVERIMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRSAPWESD*
Ga0134078_1043021823300014157Grasslands SoilLVLSNFQSTSDHPRRIPAGMSLVFLFLLTALPACTVNVRRYAFNAALENQKHIDKLHIGQTLAEVERVMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTIT
Ga0163163_1009559723300014325Switchgrass RhizosphereVLFLLVTLNACTVNVRRYAFNAALENQKHVDKLHIGQTLAEVERIMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRAAPWESD*
Ga0157377_1062910323300014745Miscanthus RhizosphereMVLLCLATMSACTVNVRRYAFNAALENQKHIDKLHIGQTLAEVERVMGKPPERRNAHVRFDGISIEEWSYITDYLRHMDTTITFVGGKVDEIRAAPWESD*
Ga0157376_100000033233300014969Miscanthus RhizosphereLIRPLVVLLLLTALPACTVNVRRYAFNAALENQKHVDKLRIGQTLAEVERIMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRSASWESD*
Ga0157376_1088668323300014969Miscanthus RhizosphereVQKIIGAIAATLLLSQGCGVYVPRYAFNLARDNQLHIDKLRAGQTLAEVERIMGHPPERRNARVRYDGISIEEWSYISDYVRRMDTTITFVGGKVDEIQTTPWVEKD*
Ga0137414_123957713300015051Vadose Zone SoilMLPACTVNVRRYAFNAALENQKHIDKLRIGQTLAEVERIMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRAAPWESD*
Ga0167622_1000896113300015158Glacier Forefield SoilLQLIRPFILLLLLLVTLPACTVNVRRYAFNAALENQKHIDKLRIGQTLSEVERIMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRAAPWESD*
Ga0137412_1071251423300015242Vadose Zone SoilMSRLIRSFAVLLFLVTMPACTVYVPRYAFQAALTNQKNIDRLRVGQTLAEVQRIMGKPPERRNAHVRFDGISIEEWSYISDYVRKMDTTITFVGGKVDEVRTAKWETD*
Ga0137403_1043009523300015264Vadose Zone SoilGACSVNVPRYAFRTALENQSRIDKIRIGQTLAEVQKIMGKPPERRSAHVRFDGISIEEWGYLTDYVRKMDVTITFVGGKVAEISTARWEND*
Ga0193722_101570523300019877SoilLVLRPRIILAALLLFAACGTYVPRYAFHAAQENQAHIDKVRIGQTLAEVQRIMAKPPERRNTHVRFDGISIEEWSYITDYVRKMDATITFVGGKVAEINTAKWEND
Ga0213903_11201313300021289SoilVRRLQRAAVLAAALLLPRCTVSVSRYAFETALKNQANVDRIRIGQTLAEVQKIMGKPPERRSAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIHAAKWD
Ga0213873_100000031263300021358RhizosphereVRFVRLAIVATALVLLPRCTVSVSRYAFETALKNQANIDRIHIGQTLAEVEKIMGKPPERRNARVRFDGISIEEWSYLTDYVRRMDTTITFVGGKVDEIHAAGWEEE
Ga0213873_1000807723300021358RhizosphereVNVRRYAFNAALENQKHVDKLRIGQTLSEVERIMGKGPERRNAHVRFDGISIEEWSYITDYVRHMDTTITFVGGKVDEIRAAPWESD
Ga0193699_1009211723300021363SoilLVLRTRLFLAALLLFAACGTYVPRYAFHAAQENQARIDKIRIGQTLAEVQRIMGKPPERRNTHVRFDGISIEEWSYLTDYVRKMDATITFVGGKVAEINTATWESE
Ga0233356_1000011173300023046SoilLVLSRLPSTNPRRIPAGISLVVLFLLATLPACTVNVRRYAFNAALENQKHIDKLRIGQTLSEVERIMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRAAPWESD
Ga0247765_106618213300023268Plant LitterVLAAALLLPCCTVSVPRYAFEIALKNQANVDRLRIGQTLAEVQKIMGKPPERRNARVRFDGISIEEWSYLTDYVRRMDTTITFVGGKVDEIHTASWETD
Ga0247686_100000793300024177SoilMPRLIRSIAILCLIATTQACAVYVPRYAFEASLTNQKNIDRLRVGQTLSEVQRIMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRSAKWEAD
Ga0247673_104126913300024224SoilMPRLIRSIAVLCFIATTQACAVYVPRYAFEASLTNQKNIDRLRVGQTLAEVQRIMGKAPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRSAKWEAD
Ga0247677_100707323300024245SoilLVLRPRIVLAALLLFAACGTYVPRYAFHAAQENQAHIDKLRIGQTLAEVQRIMGKAPERRNTHVRFDGISIEEWSYITDYVRKMDATITFVGGKVAEINTAKWEND
Ga0247692_103112413300024279SoilAFEASLTNQKNIDRLRVGQTLSEVQRIMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRSAKWEAD
Ga0247670_100065593300024283SoilMPRLIRSISILCFIATMQACAVYVPRYAFEASLTNQKNIDRLRVGQTLAEVQRIMGKAPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRSAKWEAD
Ga0247687_101018223300024286SoilLVLKTHESTLVGNPRRNAAGISVPRSRMPRLIRSISILCFIATMQACAVYVPRYAFEASLTNQKNIDRLRVGQTLAEVQRIMGKAPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRSAKWEAD
Ga0247666_1000156113300024323SoilLVLRPRIVLAAFLLFAACGTYVPRYAFHAAQENQAHIDKVRIGQTLAEVQRIMGKAPERRNTHVRFDGISIEEWSYITDYVRKMDATITFVGGKVAEINTAKWEND
Ga0247666_103287223300024323SoilRLVLKTHESTLVGNPRRNAAGISVPRSRMPRLIRSISILCFIATMQACAVYVPRYAFEASLTNQKNIDRLRVGQTLAEVQRIMGKAPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRSAKWEAD
Ga0247668_100563823300024331SoilLVLRPRIVLAALLLFAACGTYVPRYAFHAAQENQAHIDKLRIGQTLAEVQRIMGKPPERRNTHVRFDGISIEEWSYITDYVRKMDATITFVGGKVAEINTAKWEND
Ga0207705_1039946823300025909Corn RhizosphereLRLTRTIAVLFLLITLPACTVSVPRYAFEQALRNQQNVDKLRIGQTLAEVQKVMGKPPERRNAHVRFDGISIEEWSYITDYVRKMDTTITFVGGKVDEIRSAAWESD
Ga0207663_1127439813300025916Corn, Switchgrass And Miscanthus RhizosphereMVLARRAALAALLVCTSCVVVPLHAFRAAAENQARIDKLRIGQTLAEVQRIMGKPPERRNARVRFDGISIEEWGYITDYVRKQDTTITFVGGKVEEIQTTPWEKD
Ga0207652_1149747923300025921Corn RhizosphereCTVSVPRYAFEQALRNQQNVDKLRIGQTLSEVQRIMGKPPERRNAHVRFDGISIEEWSYITDYVRKMDTTITFVGGKVDEIRSAKWESD
Ga0207694_100000015763300025924Corn RhizosphereLVLIPSHPRRTPAGIWLVFLLLLVALPACTVNVRRYAFNTALENQRHIDKLRIGQTLSEVERIMGKGPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRAAPWESD
Ga0207650_10000114793300025925Switchgrass RhizosphereVNVRRYAFNAALENQKHIDKLRIGQTLAEVERIMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRSASWESD
Ga0207650_1003055843300025925Switchgrass RhizosphereLRLIRPLIVLLSLAMLPACTVNVRRYAFNAALENQKHIDKLHIGQTLAEVERVMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRAAPWESD
Ga0207650_1021708923300025925Switchgrass RhizosphereLRLIRPLIVLLCLATLPACTVNVRRYAFNAALENQKHIDKLHIGQTLAEVERVMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRAAPWGSD
Ga0207687_10000006203300025927Miscanthus RhizosphereLRLIRPLIVLLFVFTASACTVNVRRYAFNAALENQKHIDKLHIGQTLAEVERVMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRSAPWESD
Ga0207687_1000103953300025927Miscanthus RhizosphereMVLARTITLSAVLFVCSGCVVVPLHAFRAAEANQARVGKLRIGQTLAEVERIMGKPPERRNARVRFDGISIEEWSYITDYVHKEDTTITFVGGKVNEIQTTPWEKD
Ga0207686_1179706613300025934Miscanthus RhizosphereRAGEPGRERMVLRLRAAALLAALLFVDGCVCVPLHAFRAAAENQAHIDKLRIGQTLAEVQRIMGKPPERRNARVRFDGISIEEWSYITDYVRKQDTTITFVGGKVDEIRATSWEKD
Ga0207709_1015029813300025935Miscanthus RhizosphereMFRVISVLLLLITIPACTVSVPRYAFEQALRNQQNVDKLRIGQTLAEVQKVMGKPPERRNAHVRFDGISIEEWSYITDYVRKMDTTITFVGGKVDEIRSAAWESD
Ga0207711_1099180913300025941Switchgrass RhizosphereVSVPRYAFEQALRNQQNVDKLRIGQTMAEVQRTMGKPPERRNAHVRFDGISIEEWSYITDYVRKMDTTITFVGGKVDEIRSAAWESD
Ga0207689_1001065053300025942Miscanthus RhizosphereLRLIAVLLLLITIPACTVSVPRYAFEQALRNQQNVDKLRIGQTLSEVQRVMGKPPERRNAHVRFDGISIEEWSYITDYVRKMDTTITFVGGKVDEIRSAKWESD
Ga0207661_100000063923300025944Corn RhizosphereVIAAGRLSPGAQTLRLIRPLVVLLLLTALPACTVNVRRYAFNAALENQKHIDKLRIGQTLAEVERIMGKPPERRNAHVRFDGISIEEWSYVTDYVRRMDTTITFVGGKVDEIRSASWESD
Ga0207679_1131841713300025945Corn RhizosphereRRYAFNAALENQKHIDKLHIGQTLAEVERVMGKPPERRNAHVRFDGISIEEWSYITDYLRHMDTTITFVGGKVDEIRAAPWESD
Ga0207679_1157724423300025945Corn RhizosphereLRLIRPLVVLLLLTALPACTVNVRRYAFNAALENQKHIDKLRIGQTLAEVERIMGKPPERRNAHVRFDGISIEEWSYVTDYVRRMDTTITFVGGKVDEIRSASWESD
Ga0207640_1000855933300025981Corn RhizosphereLRLIRPLVVLFVLVTLPACTVNVRRYAFNAALENQKHIDKLRIGQTLAEVERIMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRSASWESD
Ga0207677_10000127523300026023Miscanthus RhizosphereLRLIRPLIVLLLLTVLPACTVNVRRYAFNAALENQRHIDKLRIGQTLAEVERIMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRSASWESD
Ga0209131_129183323300026320Grasslands SoilACTIYVPRYAFEAALANQKNTDRLRIGQTLAEVQRIMGKPPERRNAHVRFDGISIEEWSYITDYVRKMDTTITFVGGKVDEIRSAKWEAD
Ga0209731_107081813300027326Forest SoilGISFSRSRMFRLISLLLLLITIPACTVSVPRYAFEQALRNQQNVDKLRIGQTLFEVQRIMGKPPERRNAHVRFDGISIEEWSYITDYVRKMDTTITFVGGKVDEIRSAKWETD
Ga0207505_10316613300027459SoilMVLIPRAALLAALLVCTSCVVVPLHAFRAAAENQARIDKLRIGQTLAEVQRIMGKPPERRNARVRFDGISIEEWGYITDYVRKQDTTITFVGGKVEEIQTTPWEKD
Ga0207601_10693913300027461SoilAGISVSRSRMPRLIRSISILCLIATTQACAVYVPRYAFEASLTNQKNIDRLRVGQTLAEVQRIMGKAPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRSAKWETD
Ga0247663_102479423300028145SoilMPRLIRSIAILCLIATTQACAVYVPRYAFEASLTNQKNIDRLRVGQTLAEVQRIMGKAPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRSAKWEAD
Ga0247689_104678623300028281SoilMPRLIRSISILCLIATTQACTVYVPRYAFEASVTNQKNIDRLRVGQTLAEVQRIMGKAPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRSAKWEAD
Ga0307495_1026394713300031199SoilRESGGQRLVLRPRIILAALLLFAACGTNVPRYAFHAAQENQAHIDKVRIGQTLAEVQRIMGKAPERRNTHVRFDGISIEEWSYITDYVRKMDATITFVGGKVAEINTAKWEND
Ga0307506_1004239523300031366SoilMVLTRRAAALLAALLLLDGCVCVPLVAFRAASRNQARIDRLRIGQTLAEVQKIMGKSPERRNARVRFDGISIEEWSYLTDYVRKQDTTITFVGGKVDEIRATSWEKD
Ga0307506_1010167913300031366SoilLVLRPRIVLAALLLFAACGTYVPRYAFHAAQENQAHIDKVRIGQTLAEVQRIMGKPPERRNAHARFDGISIEEWSYITDYVRKMDATITFVGGKVAEINTAKWEND
Ga0372943_0943132_7_3003300034268SoilLLLTVLPACTVNVRRYAFNAAVENQKHIDKLRIGQTLAEVERIMGKGPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRAAPWESD

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.