NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105806

Metagenome / Metatranscriptome Family F105806

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105806
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 44 residues
Representative Sequence MSVALSGNDLTFPQLYDVALRGEQVQLAASAIERMNASRAV
Number of Associated Samples 81
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 98.00 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 92.00 %
Associated GOLD sequencing projects 77
AlphaFold2 3D model prediction Yes
3D model pTM-score0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (61.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(40.000 % of family members)
Environment Ontology (ENVO) Unclassified
(41.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(45.000 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 30.43%    β-sheet: 11.59%    Coil/Unstructured: 57.97%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.54
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF030614HBT 68.00
PF00378ECH_1 19.00
PF00682HMGL-like 5.00
PF00221Lyase_aromatic 4.00
PF132794HBT_2 1.00
PF02894GFO_IDH_MocA_C 1.00
PF01039Carboxyl_trans 1.00
PF03573OprD 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG2986Histidine ammonia-lyaseAmino acid transport and metabolism [E] 4.00
COG0673Predicted dehydrogenaseGeneral function prediction only [R] 1.00
COG0777Acetyl-CoA carboxylase beta subunitLipid transport and metabolism [I] 1.00
COG0825Acetyl-CoA carboxylase alpha subunitLipid transport and metabolism [I] 1.00
COG4799Acetyl-CoA carboxylase, carboxyltransferase componentLipid transport and metabolism [I] 1.00

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms61.00 %
UnclassifiedrootN/A39.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2228664022|INPgaii200_c0550513All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella805Open in IMG/M
3300001089|JGI12683J13190_1012392Not Available778Open in IMG/M
3300001661|JGI12053J15887_10373726Not Available687Open in IMG/M
3300002245|JGIcombinedJ26739_101236802All Organisms → cellular organisms → Bacteria636Open in IMG/M
3300002912|JGI25386J43895_10049957All Organisms → cellular organisms → Bacteria1203Open in IMG/M
3300002914|JGI25617J43924_10317108All Organisms → cellular organisms → Bacteria538Open in IMG/M
3300004092|Ga0062389_101789231All Organisms → cellular organisms → Bacteria794Open in IMG/M
3300005166|Ga0066674_10315008All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella tundricola735Open in IMG/M
3300005172|Ga0066683_10444163All Organisms → cellular organisms → Bacteria796Open in IMG/M
3300005174|Ga0066680_10838747All Organisms → cellular organisms → Bacteria550Open in IMG/M
3300005179|Ga0066684_10069710All Organisms → cellular organisms → Bacteria2076Open in IMG/M
3300005184|Ga0066671_10220853All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1151Open in IMG/M
3300005187|Ga0066675_10315973All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1134Open in IMG/M
3300005454|Ga0066687_10897049All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae528Open in IMG/M
3300005471|Ga0070698_100488073All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1169Open in IMG/M
3300005538|Ga0070731_10075405All Organisms → cellular organisms → Bacteria2238Open in IMG/M
3300005553|Ga0066695_10085440All Organisms → cellular organisms → Bacteria1921Open in IMG/M
3300005568|Ga0066703_10632220All Organisms → cellular organisms → Bacteria621Open in IMG/M
3300005587|Ga0066654_10755887All Organisms → cellular organisms → Bacteria549Open in IMG/M
3300006059|Ga0075017_100611146All Organisms → cellular organisms → Bacteria834Open in IMG/M
3300006102|Ga0075015_100189020All Organisms → cellular organisms → Bacteria1091Open in IMG/M
3300006172|Ga0075018_10445477All Organisms → cellular organisms → Bacteria666Open in IMG/M
3300006804|Ga0079221_10135217All Organisms → cellular organisms → Bacteria1267Open in IMG/M
3300006871|Ga0075434_100748739All Organisms → cellular organisms → Bacteria994Open in IMG/M
3300007258|Ga0099793_10665048Not Available524Open in IMG/M
3300009012|Ga0066710_100153025All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3211Open in IMG/M
3300009012|Ga0066710_104465783Not Available523Open in IMG/M
3300009038|Ga0099829_11607049Not Available536Open in IMG/M
3300009088|Ga0099830_10189628All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1603Open in IMG/M
3300009088|Ga0099830_10976455Not Available701Open in IMG/M
3300009089|Ga0099828_10461747Not Available1145Open in IMG/M
3300009090|Ga0099827_11301096Not Available632Open in IMG/M
3300009137|Ga0066709_101530133All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae960Open in IMG/M
3300009137|Ga0066709_104522429Not Available508Open in IMG/M
3300009792|Ga0126374_10998045All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium656Open in IMG/M
3300010303|Ga0134082_10108212Not Available1104Open in IMG/M
3300010326|Ga0134065_10459716Not Available523Open in IMG/M
3300010337|Ga0134062_10764882Not Available513Open in IMG/M
3300011270|Ga0137391_11150318Not Available624Open in IMG/M
3300011270|Ga0137391_11513741Not Available516Open in IMG/M
3300011271|Ga0137393_10636250All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae914Open in IMG/M
3300011271|Ga0137393_11569209Not Available548Open in IMG/M
3300012096|Ga0137389_10498701All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella1044Open in IMG/M
3300012202|Ga0137363_10311901All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1294Open in IMG/M
3300012202|Ga0137363_11201786Not Available645Open in IMG/M
3300012203|Ga0137399_10071386All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2605Open in IMG/M
3300012203|Ga0137399_10221634All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1543Open in IMG/M
3300012203|Ga0137399_10434969All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1096Open in IMG/M
3300012203|Ga0137399_10444287All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1084Open in IMG/M
3300012203|Ga0137399_11123739Not Available661Open in IMG/M
3300012285|Ga0137370_10289809All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella976Open in IMG/M
3300012362|Ga0137361_10475064All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1148Open in IMG/M
3300012363|Ga0137390_10437682All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1284Open in IMG/M
3300012685|Ga0137397_10409527All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1010Open in IMG/M
3300012685|Ga0137397_10662093All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella776Open in IMG/M
3300012685|Ga0137397_11288731Not Available520Open in IMG/M
3300012918|Ga0137396_10899638Not Available649Open in IMG/M
3300012918|Ga0137396_11229088Not Available526Open in IMG/M
3300012922|Ga0137394_11344309Not Available576Open in IMG/M
3300012922|Ga0137394_11362560Not Available571Open in IMG/M
3300012925|Ga0137419_11430408Not Available584Open in IMG/M
3300012929|Ga0137404_10591601All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae997Open in IMG/M
3300012929|Ga0137404_11850881Not Available562Open in IMG/M
3300012976|Ga0134076_10002326All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae5860Open in IMG/M
3300014150|Ga0134081_10064341All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1112Open in IMG/M
3300014157|Ga0134078_10024672All Organisms → cellular organisms → Bacteria1926Open in IMG/M
3300015052|Ga0137411_1105185Not Available722Open in IMG/M
3300015052|Ga0137411_1180366All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1131Open in IMG/M
3300015053|Ga0137405_1066746All Organisms → cellular organisms → Bacteria1876Open in IMG/M
3300015054|Ga0137420_1165566All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella949Open in IMG/M
3300015241|Ga0137418_10223830All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1612Open in IMG/M
3300015242|Ga0137412_11257791All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium517Open in IMG/M
3300015358|Ga0134089_10373738Not Available604Open in IMG/M
3300015359|Ga0134085_10557839Not Available529Open in IMG/M
3300016357|Ga0182032_10214595Not Available1473Open in IMG/M
3300017995|Ga0187816_10441849Not Available581Open in IMG/M
3300018468|Ga0066662_10880971All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae877Open in IMG/M
3300020021|Ga0193726_1242003Not Available736Open in IMG/M
3300020199|Ga0179592_10003512All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae6618Open in IMG/M
3300020580|Ga0210403_10833610All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella731Open in IMG/M
3300025905|Ga0207685_10445941Not Available672Open in IMG/M
3300026309|Ga0209055_1134492All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella899Open in IMG/M
3300026499|Ga0257181_1025758All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae900Open in IMG/M
3300026538|Ga0209056_10108359All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2242Open in IMG/M
3300026538|Ga0209056_10477230Not Available673Open in IMG/M
3300027748|Ga0209689_1248753All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella731Open in IMG/M
3300027775|Ga0209177_10108643All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella891Open in IMG/M
3300027842|Ga0209580_10494245Not Available609Open in IMG/M
3300027862|Ga0209701_10302656All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium918Open in IMG/M
3300028536|Ga0137415_10966508Not Available662Open in IMG/M
3300029636|Ga0222749_10202989All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella992Open in IMG/M
3300030618|Ga0311354_10085227All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3562Open in IMG/M
3300031573|Ga0310915_11207298Not Available523Open in IMG/M
3300031720|Ga0307469_11597685Not Available626Open in IMG/M
3300031820|Ga0307473_10151888All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1318Open in IMG/M
3300031820|Ga0307473_10899513Not Available639Open in IMG/M
3300031820|Ga0307473_11402802Not Available526Open in IMG/M
3300031954|Ga0306926_11162132All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae909Open in IMG/M
3300032174|Ga0307470_10953111Not Available679Open in IMG/M
3300033289|Ga0310914_11038945All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella720Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil40.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil15.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil8.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil7.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil5.00%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil5.00%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds3.00%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil3.00%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil2.00%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil2.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.00%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil1.00%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.00%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa1.00%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2228664022Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300001089Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3EnvironmentalOpen in IMG/M
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300002912Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cmEnvironmentalOpen in IMG/M
3300002914Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cmEnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300005166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123EnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005174Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129EnvironmentalOpen in IMG/M
3300005179Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133EnvironmentalOpen in IMG/M
3300005184Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120EnvironmentalOpen in IMG/M
3300005187Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124EnvironmentalOpen in IMG/M
3300005454Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136EnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005553Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144EnvironmentalOpen in IMG/M
3300005568Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152EnvironmentalOpen in IMG/M
3300005587Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103EnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006102Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013EnvironmentalOpen in IMG/M
3300006172Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014EnvironmentalOpen in IMG/M
3300006804Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200EnvironmentalOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010303Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015EnvironmentalOpen in IMG/M
3300010326Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010337Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015EnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012976Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300014150Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014157Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300015052Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015053Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015054Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015241Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015242Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015358Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300015359Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015EnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300017995Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300020021Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1EnvironmentalOpen in IMG/M
3300020199Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300025905Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026309Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)EnvironmentalOpen in IMG/M
3300026499Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-BEnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300027748Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)EnvironmentalOpen in IMG/M
3300027775Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)EnvironmentalOpen in IMG/M
3300027842Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030618II_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
INPgaii200_055051312228664022SoilMSVVLNGNDLTFSQLYDVALRGETVSLAPAAIERMNASRAVVER
JGI12683J13190_101239213300001089Forest SoilMSVALSGNDLTFPQLYDVALRGEQVQLAASAIERMNASRAV
JGI12053J15887_1037372613300001661Forest SoilMSVALSGNDLSFPQLYDVALRGEQVQVTASAIERMNASRAVVE
JGIcombinedJ26739_10123680213300002245Forest SoilMTIALSGNDLTFDQLYAVALRGEKVALTEDAIERMKASRAVVDRVV
JGI25386J43895_1004995713300002912Grasslands SoilMSVSLTGNDLTFAQLYKVALHDETVELASAAVNRMNASRAVVERL
JGI25617J43924_1031710813300002914Grasslands SoilMSVALTGNDLTFAQLYDVALRGEQVQLTASAIEKMNGSRAVVERLVASGE
Ga0062389_10178923113300004092Bog Forest SoilMNPAANVANVASVELTGNELTFAELHAVAVDGAPVTLAPLAVERMHTSRAVVERL
Ga0066674_1031500813300005166SoilMSVLLTGNDLTFAQLYAVALGGEDTGLAPASFEKMNASRAA
Ga0066683_1044416313300005172SoilMSIALSGNDLTFQQLYDAALRGQNVSLARGAMERMNASRA
Ga0066680_1083874723300005174SoilMSVALSGNDLTFSQLYDVVLRAESVSLAPAAIERMNASRAVVERLVAS
Ga0066684_1006971013300005179SoilMSVALSGNDLTFPHLHDVALRGAEVQLTASAIERMNASRAVVE
Ga0066671_1022085313300005184SoilMSVLLTGNDLTFAQLDAVALGGESAGLAPVAAERMNASRRIVEHLVA
Ga0066675_1031597333300005187SoilMSVALSGNDLTFPQLHDVALRGEPVQLTASAIEHMNASRAVVERLVASGAAAY
Ga0066687_1089704913300005454SoilMSVLLTGNDLTFAQLYAVALGGEDTGLAPASFEKMNASRAAVER
Ga0070698_10048807333300005471Corn, Switchgrass And Miscanthus RhizosphereMSVVLSGNDLTFSQLYDVALRGETVSLAPSAIAGMNASRAVVERLVASGATA
Ga0070731_1007540513300005538Surface SoilMNIVLNGNDLTFQQLYDVALRGETVWLAAAAIERMNASREVVDRLV
Ga0066695_1008544043300005553SoilMSVALSGNDLTFPHLHDVALRGAEVQLTASAIERMNA
Ga0066703_1063222023300005568SoilMSVALSGNDLTFPQLHDVALRGEQVELTPASIERMNASRAVVERLVASG
Ga0066654_1075588713300005587SoilMSVLLTGHDLTFAQLYAVALRGETVGLAPASVERMNASRGVV
Ga0075017_10061114613300006059WatershedsMSVALNGNDLTFSQLYDVALRGEQVHVAASATERMNASR
Ga0075015_10018902033300006102WatershedsMSVALNGNDLTFSQLYDVALRGEQVHVAASATERMNASRAVVDRLVA
Ga0075018_1044547723300006172WatershedsMSVALSGNDLTFAQLYDVALRGEAVQLAASAIERMNASRAVVD
Ga0079221_1013521713300006804Agricultural SoilMSVLLTGNDLTFPQLYGVALRGENVGLAPAAAERMNASRAVVERLLASGA
Ga0075434_10074873913300006871Populus RhizosphereMTPATGTVQLTGNDLSFAQLYAVALQAEKVSLAAAAVERMKASRAVVDRLVAS
Ga0099793_1066504823300007258Vadose Zone SoilMSVALSGNDLTFPHLHDVALRGAEVQLTASAIERM
Ga0066710_10015302563300009012Grasslands SoilMSIALSGNDLTFQQLYDAALRGQNVSLARGAMERMNAS
Ga0066710_10446578313300009012Grasslands SoilMSVLLTGNDLTFAQLYAVALRGETVGLAPASVERMNASRGVVERLVASGET
Ga0099829_1160704923300009038Vadose Zone SoilVRVALTGNDLDFSQLYDVALRGEQVQLSVSAIERMNASR
Ga0099830_1018962813300009088Vadose Zone SoilMSIALSGNDLTFEQLYSVALRGGAVSLAASAMERMKASRAVVDRLVAS
Ga0099830_1097645533300009088Vadose Zone SoilMSIALSGNDLTFSQLYDVALLGEQVQLTASAIERMKASRAV
Ga0099828_1046174733300009089Vadose Zone SoilMSIALSGNDLTFSQLYDVALRGEQVQLTASAIERM
Ga0099827_1130109613300009090Vadose Zone SoilMSVALSGNDLTFPQLYDVALRGEQVQLTASAIERMNASRAV
Ga0066709_10153013333300009137Grasslands SoilMSIALSGNDLTFQQLYDAALRGQNVSLARGAMERMN
Ga0066709_10452242913300009137Grasslands SoilMSVLLTGNDLSFAQLDAVALRGENTGLAPTAVERMNASRAVVERVVA
Ga0126374_1099804513300009792Tropical Forest SoilMSAISSAIALTGNNLTFEQLYAVALHSHQVHLAPDAIERMKASRAVVDRLVSS
Ga0134082_1010821233300010303Grasslands SoilMSVALSGNDLTFPHLQDVALRGAEVQLTASAIERMNASR
Ga0134065_1045971613300010326Grasslands SoilMSVALSGNDLTFPRLHDVALRRAEVQLTASAIERMNASRQVVERLVASG
Ga0134062_1076488213300010337Grasslands SoilMSVALSGNDLTFPHLHDVALRGAEVQLTASAIERMNASRAV
Ga0137391_1115031823300011270Vadose Zone SoilMSVALSGNDLTFPQLYDVALQGDQVQLTASAIERMKA
Ga0137391_1151374123300011270Vadose Zone SoilMSFALSGNDLTFAQLYDVALRGEQVQLTASAIERM
Ga0137393_1063625033300011271Vadose Zone SoilMTIALSGNDLTFQQLYDAALGGQNVSLTRGAMERMNASRAVVERVVASG
Ga0137393_1156920913300011271Vadose Zone SoilMSVALSGNDLTFPQLYDVALRGEEVQLTASAIERMNASRA
Ga0137389_1049870133300012096Vadose Zone SoilVRVALTGNDLDFSQLYDVALRGEQVELTASAIERMNASRAVVERL
Ga0137363_1031190113300012202Vadose Zone SoilMSVALSGNDLTFPQLYDVALRGEQVQLAASAIERMNASRAVVERLVASGAT
Ga0137363_1120178613300012202Vadose Zone SoilMSVLLSGNDLTFTQLCDVALRGEAVSLAPAAIERMNASRAVVERLVASGATA
Ga0137399_1007138613300012203Vadose Zone SoilMSVALSGNDLTFSQLYDVALRGEQVHLADSAIERMNASRAVVDRLVA
Ga0137399_1022163413300012203Vadose Zone SoilMSVALSGNNLTFSQLYDVALRGETVSLAPAAIERMNASRAVVDRLVASGA
Ga0137399_1043496933300012203Vadose Zone SoilMSIALSGNDLTFPQLYDVALRGEQVQLTAPAIERMNASRAVVD
Ga0137399_1044428733300012203Vadose Zone SoilMSVALSGNDLTFPQLYDVALQGDQVQLTASAIERM
Ga0137399_1112373913300012203Vadose Zone SoilMSVALSGNDLSFPQLYDVALRGEQVQVTASAIERMNASRAVVERLV
Ga0137370_1028980913300012285Vadose Zone SoilMSVALSGNHLTFPQLHDVALRGEPVQLTASAIERMNASRAVVERLVACG
Ga0137361_1047506433300012362Vadose Zone SoilMSVVLSGNELTFSQLYDVALRAETVSLAPAAIERMNAS
Ga0137390_1043768213300012363Vadose Zone SoilMSVALSGNDLTFPQLYDVALRGEQVQLTASAIERMEASR
Ga0137397_1040952713300012685Vadose Zone SoilMSVVLSGNDLTFSQLYDVALRAEIVSLAPAAIERMNAS
Ga0137397_1066209333300012685Vadose Zone SoilMSVALSGNDLTFSQLYDVALRGETVSLAPAAIERMNASRGVVDRL
Ga0137397_1128873113300012685Vadose Zone SoilMSVALTGNDLTFSQLYDVALRGETVLLAPTAIEGMNASRA
Ga0137396_1089963813300012918Vadose Zone SoilMSVALSGNDLSFPQLYDVALRGEQVQVTASAIERMN
Ga0137396_1122908813300012918Vadose Zone SoilMSVALSGNDLTFSQLYDVALRRETVSLAPAAIERMNASRAVVDRLVASG
Ga0137394_1134430913300012922Vadose Zone SoilMSVVLSGNELTFSQLYDVALRAETVSLAPAAIERMNASRAVVERLVA
Ga0137394_1136256023300012922Vadose Zone SoilMSVALSGNDLTFSQLYDVALRGETVSLAPAAIERMNASRA
Ga0137419_1143040823300012925Vadose Zone SoilMSVALSGNELTFSQLYDVALRAETVSLAPAAVEGMNASRAVVERLV
Ga0137404_1059160133300012929Vadose Zone SoilMSVVLSGNELTFSQLYDVALRAETVSLAPAAIERMNASRAVVER
Ga0137404_1185088123300012929Vadose Zone SoilMSVALSGNDLTFSQLYDVALRGETVSLAPAAIERMN
Ga0134076_1000232663300012976Grasslands SoilMSIALSGNDLTFQQLYDAALRGQNVSLARGAMERMNASRAVVERVVAS
Ga0134081_1006434113300014150Grasslands SoilMSVALSGNDLTFPQLHDVALRGEQVQLTPPAIERMNASRAVVD
Ga0134078_1002467213300014157Grasslands SoilMSVALSGNDLTFPHLHDVALRGAEVQLTASAIERMNASRAVVERLVASGATAY
Ga0137411_110518533300015052Vadose Zone SoilMSVVLSGNDLTFSQLYDVALRAETVSLAPAAIERMNASRAVVERLVASGATAY
Ga0137411_118036613300015052Vadose Zone SoilMSVVLSGNDLTFSQLYDVALRAETVSLAPAAIERMNASRASRAVVERLVASGA
Ga0137405_106674613300015053Vadose Zone SoilMSVALTGNDLTFSQFYDVALRGEQVQLSVAAIERMSCGNRADECF
Ga0137420_116556633300015054Vadose Zone SoilMSVALSGNDLTFPQLYDVALRGEQVQLSASAIERMNASRAVVE
Ga0137418_1022383033300015241Vadose Zone SoilMTVALTGNDLTFAQLYDVALRSEQVQVAASAIERMNASRGVVDRLV
Ga0137412_1125779113300015242Vadose Zone SoilMTQSFSTIELTGNDLTFNQLYAVALQKARVSLASVAAERMNASRAVVDR
Ga0134089_1037373823300015358Grasslands SoilMSVALSGNDLTFPQLYDVALRCEQVQLTASAIERMHASR
Ga0134085_1055783913300015359Grasslands SoilMSIALSGNDLTFQQLYDAALRGQNVSLTPGAMERMNASRAVVERVVASGATAY
Ga0182032_1021459513300016357SoilMSVLLTGNDLTFSQLYAVALVGESTGLAPAAGEKMKASRAAVERLLA
Ga0187816_1044184923300017995Freshwater SedimentMIIALSGDDLTFEQLYGVALRGEAVGLAPAAMERMKASRAVVDRLVAKG
Ga0066662_1088097133300018468Grasslands SoilMSIALSGNDLTFQQLYDAALRGQNVSLARGAMERMNASRAVVERVV
Ga0193726_124200333300020021SoilMSIALSGNELTFAQLHRVALLGEEVSLAPAAIARMKASRA
Ga0179592_1000351263300020199Vadose Zone SoilMSVALSGNDLTFSQLYEVALRGEQVHVTASAVERMNASRAVVDRLVE
Ga0210403_1083361013300020580SoilMSVALSGNDLTFKQLYDVALRGEIVALAGAAVERMNASRAVV
Ga0207685_1044594123300025905Corn, Switchgrass And Miscanthus RhizosphereMSVLLTGNDLTFAQLYAVALRGETVGLAPTAVERMNASRAVVECL
Ga0209055_113449233300026309SoilMSVALSGNELTFPQLYDVALGGEQVQLTASAIERMNVSRAVVDRVVASGEAAYG
Ga0257181_102575833300026499SoilMSVALSGNDLTFPQLHDVALRADQVHLNASAIERMNASRAVVERLVASG
Ga0209056_1010835913300026538SoilMSVALSGNDLNFSQLYDVVLRAETVSLAPAAIERMNA
Ga0209056_1047723023300026538SoilMSVALSGNDLTFPQLYDVALRSEQVQLTAPAIEGMNASRAVVD
Ga0209689_124875313300027748SoilMSVALSGNELTFPQLYDVALGGEQVQLTASAIERMNVSRAVVDRVVASG
Ga0209177_1010864333300027775Agricultural SoilMSVLLTGNDLTFAQLYAVALRGETVGLAPGAVERMNASRAVVERL
Ga0209580_1049424513300027842Surface SoilMSAATASISLTGNDLTFAQFIAVALRGEKVALAPDAVQRMQASRAVVERVV
Ga0209701_1030265623300027862Vadose Zone SoilMSVALSGNDLIFPQLYDVALRGAEVQLTASAIERMNASRA
Ga0137415_1096650823300028536Vadose Zone SoilMSVGLSGNDLTFPQLHDVALRGEPVQLTASAIERMN
Ga0222749_1020298913300029636SoilMTSNPARPIELTGNDLTFAQLYDVALRGEKVTLSAGAIEGMKASRAVVERVVAS
Ga0311354_1008522713300030618PalsaMTIAINGNDLTFEQLYDVALNGQEVTLAPDARERMNASRAVIDRL
Ga0310915_1120729813300031573SoilMSVLLTGNDLTFSQLYAVALVGESTGLAPAAGEKMKASRAAVERLLASGAT
Ga0307469_1159768523300031720Hardwood Forest SoilMSVALSGNDLTFVHLHDVALRGAEVQLTASAIERMNASRA
Ga0307473_1015188833300031820Hardwood Forest SoilMTVALSGNDLTFPQLHDVALRGEQVQLTASAIERMNASRAVVERLVASGAAAYG
Ga0307473_1089951313300031820Hardwood Forest SoilMSVALTGNDLNFSQLYDVALRGEQIQLSVSAIERMNASR
Ga0307473_1140280223300031820Hardwood Forest SoilMSVALSGNDLTFSQLYDVALRGETVSLAPAAIERMNASRAVVDRLLASGATA
Ga0306926_1116213213300031954SoilMSVLLTGNDLTFSQLYAVALDGESTGLAPAASEKMKASRTAVERL
Ga0307470_1095311123300032174Hardwood Forest SoilMSVVLSGNDLTFSQLYDVALRGEAVSLAPAAIERMNASRAVVER
Ga0310914_1103894513300033289SoilMSVLLTGNDLTFSQLYAVALVGESTGLAPAAGEKMKASRA

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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