Basic Information | |
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Family ID | F105852 |
Family Type | Metagenome |
Number of Sequences | 100 |
Average Sequence Length | 50 residues |
Representative Sequence | MAHEEEPLLAHPPTQEVAVHVRDYERFTKLFKYGALTCLVIGFVVLLILK |
Number of Associated Samples | 81 |
Number of Associated Scaffolds | 100 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 76.00 % |
% of genes near scaffold ends (potentially truncated) | 38.00 % |
% of genes from short scaffolds (< 2000 bps) | 89.00 % |
Associated GOLD sequencing projects | 76 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.46 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (100.000 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere (14.000 % of family members) |
Environment Ontology (ENVO) | Unclassified (50.000 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (46.000 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 43.59% β-sheet: 0.00% Coil/Unstructured: 56.41% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.46 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Soil Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Serpentine Soil Surface Soil Termite Nest Soil Agricultural Soil Soil Grasslands Soil Soil Tropical Peatland Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Switchgrass Rhizosphere Agricultural Soil Arabidopsis Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Arabidopsis Thaliana Rhizosphere Miscanthus Rhizosphere Corn, Switchgrass And Miscanthus Rhizosphere Switchgrass Rhizosphere Populus Endosphere Populus Rhizosphere Rhizosphere Switchgrass Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Agave Petroleum Sediment |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
MRS1b_0763.00001260 | 2162886011 | Miscanthus Rhizosphere | MAHDEEPLLADPPSAEAAYHVRDYERFTKLLKYGAIACLCIAFIVVMLIS |
INPhiseqgaiiFebDRAFT_1005381222 | 3300000364 | Soil | MAEEEPLLVSPPTQEVAAHVRDYERFTKLLKYGALXCLVIAFVVLLILK* |
JGI1027J12803_1078460043 | 3300000955 | Soil | MAEEEPLLVSPPTQEVAAHVRDYERFTKLLKYGALICLVI |
Ga0062593_1000587983 | 3300004114 | Soil | MAHDEEPLLADPPSAEAAYHVRDYERFTKLLKYGAIACLCIAFIVVMLIS* |
Ga0062589_1025872702 | 3300004156 | Soil | MAHDEEPLLAHPPTAEVAHHVEDYERFTKLLKYGAIACLAIGFLVVLIIS* |
Ga0063356_1008506362 | 3300004463 | Arabidopsis Thaliana Rhizosphere | MAHDEEPLLAHPPTQEVAHHVHDYERFTKLLKYGAIACLIIAFLVLLIIT* |
Ga0063356_1009672552 | 3300004463 | Arabidopsis Thaliana Rhizosphere | MAHDEEPLLADPPSAEAAYHVRDYEHFTKLLKYGAIACLVVAFIVIMLIS* |
Ga0062592_1005446041 | 3300004480 | Soil | MAHDEDPLLADPPSAEAAYHVRDYERFTKLLKYGAIACLCIAFIVVMLIS* |
Ga0066677_106945281 | 3300005171 | Soil | MAEEEPLLVSPPNQDTAVHVRDYLRFTKLLKWGFLTCLVIAFIVLLILKNG* |
Ga0066684_106041251 | 3300005179 | Soil | DRASKESFMAEEEPLLVSPPTQDTAVHVRDYLRFTKLLKWGFLTCLVIAFIVLLILKNG* |
Ga0066678_106811041 | 3300005181 | Soil | KPSTRRGLGRAASLVMDTPDRASKESLMAEEEPLLVSPPTQDTAVHVRDYLRFTKLLKWSFLTCLVIAFVVLLILKNG* |
Ga0066675_110016581 | 3300005187 | Soil | MAEEEPLLVSPPTQDTAVHVRDYLRFTKLLKWGFLTCLVIAFIVLLILKNG* |
Ga0070676_101665633 | 3300005328 | Miscanthus Rhizosphere | HMAHDEEPLLADPPSAEAAYHVRDYERFTKLLKYGAIACLCIAFIVVMLIS* |
Ga0070690_1009084711 | 3300005330 | Switchgrass Rhizosphere | PLRDAKGEIMAHEEEPLLAHPPTQEVAVHVRDYERFTKLFKYGALTCLVIGFVVLLILK* |
Ga0070670_1003093182 | 3300005331 | Switchgrass Rhizosphere | MAHDEEPLLADPPSAEAAYHVQDYERFTKLLKYGALICLAIAFLVVMIIS* |
Ga0070677_105388172 | 3300005333 | Miscanthus Rhizosphere | LLAHPPTAEVAHHVEDYERFTKLLKYGAIACLAIGFLVVLIIS* |
Ga0068869_1000620561 | 3300005334 | Miscanthus Rhizosphere | KDMADDESLLANPPTHEVAVHVHDYERFTKIMKWGALFCLVVGFVVLQIL* |
Ga0070689_1009856261 | 3300005340 | Switchgrass Rhizosphere | DAKGEIMAHEEEPLLAHPPTQEVAVHVRDYERFTKLFKYGALTCLVIGFVVLLILK* |
Ga0070689_1009971352 | 3300005340 | Switchgrass Rhizosphere | MADDESLLANPPTHEVAVHVHDYERFTKIMKWGALFCLVVGFVVLQIL* |
Ga0070659_1018647581 | 3300005366 | Corn Rhizosphere | MAHDEEPLLADPPSAEAAYHVRDYERFTKLLKYGALICLAIAFLVVMIIS* |
Ga0070667_1013324912 | 3300005367 | Switchgrass Rhizosphere | MAEEEPLLVSPPTQHVAVHVRDYVRFTKLLKWGALICLVIGFVVLLILK* |
Ga0070713_1021020412 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | MAHEEEPLLASPPTQEMAAHVHDYERFTRMIKYGAIACLIVGFIVLLILK* |
Ga0070662_1001996742 | 3300005457 | Corn Rhizosphere | MAHEEEPLLAHPPTQEVAVHVRDYERFTKLFKYGALTCLVIGFVVLLILK* |
Ga0070735_102045072 | 3300005534 | Surface Soil | MAEEEEPLLASPPTQEVAVHVADYERFTRMLKLGAITCLIIGFIVLLILK* |
Ga0066702_102368282 | 3300005575 | Soil | MAEEEPLLVSPPTQDAAAHVRDYLRFTKLLKWGFLTCLVIAFIVLLILKNG* |
Ga0066702_102594522 | 3300005575 | Soil | MAEEEPILVSPPTQEMAHHVADYARFTRMLKYGAFVCLIVGFIVLLILK* |
Ga0068859_1006361472 | 3300005617 | Switchgrass Rhizosphere | MAHDEEPLLADPPSAEAAYHVRDYERFTKLLKYGAIACLCIAFIVVML |
Ga0068864_1020950611 | 3300005618 | Switchgrass Rhizosphere | MADDESLLANPPTHEVAVHVHDYERFTKIMKWGALFCLVVGFVVLQ |
Ga0066903_1043811101 | 3300005764 | Tropical Forest Soil | MAEEEPLLVSPPTPEVAVHVRDYERFTKLLKWGALTCLAV |
Ga0081201_1205892 | 3300006061 | Petroleum Sediment | MAHDEEPLLANPPSAEAAYHVRDYERFTKLLKYGAIICFIIGFLVVLIIS* |
Ga0082029_10916661 | 3300006169 | Termite Nest | MAHDEEPLLADPPSAEAAYHVRDYEQFTKLLKYGALTCLVIAFLVVLIIS* |
Ga0082029_17639782 | 3300006169 | Termite Nest | MAHDEEPLLADPPSAEAAYHVRDYERFTKLLKYSALVCLAVAFLVVLIIS* |
Ga0070712_1003762292 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | MAEEEPLLVSPPTQEVAVHVRDYERFTKLLKWGALTCLIIGFSVLLILKS* |
Ga0075366_101754462 | 3300006195 | Populus Endosphere | MAEEEPLLVSPPSQDVAVHVRDYVRFTKLLKWGALICLVIGFAVLLILK* |
Ga0079222_121220801 | 3300006755 | Agricultural Soil | MMHEEEPLLASPPTQDMAVHVHDYMRFTKILKWGALFCLLVGFIVLLILK* |
Ga0066665_111472202 | 3300006796 | Soil | MAEEEPLLVSPPTQDTAVHVRDYLRFTKLLKWSFLTCLVIAFIVLLILKNG* |
Ga0066659_117016821 | 3300006797 | Soil | MAEEEPLLASPPTQDTAVHVRDYLRFTKLLKWGFLTCLVIAFVVLLI |
Ga0079220_120004021 | 3300006806 | Agricultural Soil | MPDLLDQEEEPLLVSPPTQEAAIHVKDYLRFTQLMKWGALTCLVIGFIVLLILK* |
Ga0075424_1005708022 | 3300006904 | Populus Rhizosphere | MAHEEEPLLVSPPTQEASVHVKDYLHFTKMMKWGALTCLVLGLISLIIVKAYW* |
Ga0079219_124916702 | 3300006954 | Agricultural Soil | MAEEEPLLVSPPTQDMAVHVHDYARFTRLMTRGAIACLIIGFIVLLILK* |
Ga0066709_1014865422 | 3300009137 | Grasslands Soil | MAEEEPILVSPPTQEMAHHVADYARFTRMLKWAALTCLIIGFVVLL |
Ga0105248_124602271 | 3300009177 | Switchgrass Rhizosphere | GIFMAHDEEPLLAHPPTAEVAHHVEDYERFTKLLKYGAIACLAIGFLVVLIIS* |
Ga0126310_115050432 | 3300010044 | Serpentine Soil | MAEEEESLLASPPTHEVATHVRDYEAFTRLFKYGAIICLIIGFIVLLILK* |
Ga0126379_113880362 | 3300010366 | Tropical Forest Soil | MAEEEPLLVSPPTQEVAVHVRDYERFTKLLKWGALTCLVIGFTVLLILKS* |
Ga0134126_118221022 | 3300010396 | Terrestrial Soil | MMAEEEPLLVSPPTQEVAAHVHDYERFTKLMKYGALICLVIGIVSLFII |
Ga0137363_107135152 | 3300012202 | Vadose Zone Soil | MAEEEEPILAHPGTHEVAVHVRDYERFTQMMKYGALICLIIGFIVLLILK* |
Ga0137378_113866131 | 3300012210 | Vadose Zone Soil | MDTADRASKESFMAEEERLLVSPSTQDTAVHVRDYLRFTKLLKWGFLTCLVIAFVVLLILKNG* |
Ga0137367_109055122 | 3300012353 | Vadose Zone Soil | MDTADRASKESFMAEEEPLLVSPPTQDTAVHVRDYLRFTKLLKWSFLTCLVIAFIVLLILKNG* |
Ga0137385_111325481 | 3300012359 | Vadose Zone Soil | MDTADRASKESLMAEEEPLLVSPPTQDTAVHVRDYLRFTKLLKWGFLTCLVIAFIVLLILKNG* |
Ga0157374_123755372 | 3300013296 | Miscanthus Rhizosphere | RDCQMAEEEPLLVSPPSQDVAVHVRDYVRFTKLLKWGALICLVIGFAVLLILK* |
Ga0157374_126700102 | 3300013296 | Miscanthus Rhizosphere | MVHYEEPLFADPPAAEAAYHVRDYERFTKLLKYGAIACLCIAFIVVMLIS* |
Ga0157378_123331492 | 3300013297 | Miscanthus Rhizosphere | AHDEEPLLADPPSAEAAYHVRDYERFTKLLKYGAIACLCIAFIVVMLIS* |
Ga0163162_107881732 | 3300013306 | Switchgrass Rhizosphere | MADDESLLANPPTHEVAVHVHDYERFTKIMKWGALFCLVVGFLVLQIL* |
Ga0182000_101104042 | 3300014487 | Soil | MAEEEPILVSPPTQEVAVHVRDYERFTRLLKYGAIACLIIGFIVLLILK* |
Ga0132258_1002290416 | 3300015371 | Arabidopsis Rhizosphere | MAHDEEPLLADPPTAEAAYHVQDYERFTKLLKYGALICLAIAFLVVMIIS* |
Ga0132255_1017604442 | 3300015374 | Arabidopsis Rhizosphere | MAHDEEPLLADPPKAEAAYHVQDYERFTKLLKYGALICLAIAFLVVMIIS* |
Ga0187785_106445221 | 3300017947 | Tropical Peatland | MAEEESILVSPPTQDMANHVHDYTNFTRLLKYGAFICLIIGFIVLLILKK |
Ga0066667_111350022 | 3300018433 | Grasslands Soil | MAEEEPLLVSPPTQDTAVHVRDYLRFTKLLKWGFLTCLVIAFIVLLILKNG |
Ga0066662_100537741 | 3300018468 | Grasslands Soil | MAEEEPLLVSPPTQDAAAHVRDYLRFTKLLKWGFLTCLVIAFIVLLILKNG |
Ga0066662_103047211 | 3300018468 | Grasslands Soil | MAEEEPILVSPPTQEMAHHVADYARFTRMLKYGAFVCLIVGFIVLLILK |
Ga0066662_128569772 | 3300018468 | Grasslands Soil | MAEEEPLLVSPPNQDTAVHVRDYLRFTKLLKWGFLTCLVIAFIVLLILKNG |
Ga0207697_100227141 | 3300025315 | Corn, Switchgrass And Miscanthus Rhizosphere | MAHDEEPLLAHPPTAEVAHHVEDYERFTKLLKYGAIACLAIGFLVVLIIS |
Ga0207697_100773602 | 3300025315 | Corn, Switchgrass And Miscanthus Rhizosphere | MAHDEEPLLADPPSAEAAYHVQDYERFTKLLKYGALICLAIAFLVVMIIS |
Ga0207656_102330291 | 3300025321 | Corn Rhizosphere | MAHDEEPLLADPPSAEAAYHVRDYERFTKLLKYGAIACLCIAF |
Ga0207656_104034861 | 3300025321 | Corn Rhizosphere | MAHDEEPLLADPGTQEMTVHVRDYDRFTKLMFRGAILCL |
Ga0207654_106896412 | 3300025911 | Corn Rhizosphere | MADDESLLANPPTHEVAVHVHDYERFTKIMKWGALFCLVVGFVVLQIL |
Ga0207657_101612213 | 3300025919 | Corn Rhizosphere | MAHEEEPLLAHPPTQEVAVHVRDYERFTKLFKYGALTCLVIGFVVLLILK |
Ga0207694_102503072 | 3300025924 | Corn Rhizosphere | METRNRKGRLMADDESLLTNPQTQDVAVHVNDYVRFTKLLKWGAVLCLLTGFIVLLIL |
Ga0207664_108339292 | 3300025929 | Agricultural Soil | MAHEEEPLLASPPTQEMAAHVHDYERFTRMIKYGAIACLIVGFIVLLILK |
Ga0207668_112968702 | 3300025972 | Switchgrass Rhizosphere | MADDESLLANPPTHEVAVHVHDYERFTKIMKWGAL |
Ga0207658_116856551 | 3300025986 | Switchgrass Rhizosphere | EEIHEGKDMADDESLLANPPTHEVAVHVHDYERFTKIMKWGALFCLVVGFVVLQIL |
Ga0207676_102065941 | 3300026095 | Switchgrass Rhizosphere | MAHDEEPLLGDPPSAEAAYHVQDYERFTKLLKYGALICL |
Ga0207674_117390371 | 3300026116 | Corn Rhizosphere | MAHDEEPLLADPPSAEAAYHVRDYERFTKLLKYGAIACLCIAFIVVM |
Ga0207674_118882431 | 3300026116 | Corn Rhizosphere | DDESLLANPPTHEVAVHVHDYERFTKIMKWGALFCLVVGFVVLQIL |
Ga0207675_1015848262 | 3300026118 | Switchgrass Rhizosphere | PLLADPPSAEAAYHVRDYERFTKLLKYGAIACLCIAFIVVMLIS |
Ga0207675_1027251072 | 3300026118 | Switchgrass Rhizosphere | MAHDEEPLLAHPPTAEVAHHVEDYERFTKLLKYGAIACLAIG |
Ga0207698_103009552 | 3300026142 | Corn Rhizosphere | MAEEESLLVSPPTHDVAAHVRDYERFTKLMFRGAVICLIVGLVSLMFIKAYW |
Ga0209461_100379551 | 3300027750 | Agave | RHLKGIKMAHDEEPLLAHPPTAEVAHHVQDYERFTKLLKYGALICLAIAFLVVLIIS |
Ga0209461_100923482 | 3300027750 | Agave | MAHDEEPLLANPPTHEVAVHVRDYERFTRLFKYGALTCLVIGFFVLLIL |
Ga0209168_100971332 | 3300027986 | Surface Soil | MAEEEEPLLASPPTQEVAVHVADYERFTRMLKLGAITCLIIGFIVLLILK |
Ga0247827_100774282 | 3300028889 | Soil | MAHDEEPLLADPPSAEAAYHVRDYEQFTKLLKYGAIVCLIIAFIVVMLIS |
Ga0268240_101502911 | 3300030496 | Soil | MAHDEEPLLADPPSAEAAYHVRDYERFTKLLKYGAITCLIIAFIVVMLIS |
Ga0307408_1000342952 | 3300031548 | Rhizosphere | MAHDEEPLLADPPSAEAAYHVRDYERFTKLLKYSALVCLAIAFLVVLIIS |
Ga0307408_1012729632 | 3300031548 | Rhizosphere | MAEEEEPLLAHPPTHEVATHVRDYERFTKLLKWGAL |
Ga0307408_1015743392 | 3300031548 | Rhizosphere | MAEEEEPLLAHPGSPEVATHVRDYERFTRLLKIGALTCLVIAFIV |
Ga0307405_100431152 | 3300031731 | Rhizosphere | MAEEEEPLLAHPGSPEVATHVRDYERFTRLLKIGALTCLVIAFIVLLIL |
Ga0307405_119780541 | 3300031731 | Rhizosphere | DRNKGIGMAEEEEPLLAHPPTHEVATHVRDYERFTKLLKWGALTCLVIAFIVLLIL |
Ga0307413_113927871 | 3300031824 | Rhizosphere | KRVWRNHMAHDEEPLLADPPSAEAAYHVRDYERFTKLLKYSALVCLAIAFLVVLIIS |
Ga0307410_114828951 | 3300031852 | Rhizosphere | YGTPTHRQLKGIKMAHDEEPLLAHPPTAEVAHHVEDYERFTKLLKYSALVCLAIAFLVVLIIS |
Ga0310892_112614701 | 3300031858 | Soil | LGAGRSPCYGPGKQIWRKHMAHDEEPLLADPPSAEAAYHVRDYERFTKLLKYGAIACLCIAFIVVMLIS |
Ga0308175_1019605972 | 3300031938 | Soil | MAHEEEPLLASPPTQEVATHVRDYEKFTRMMKWGALTCLIIGFIVLLILK |
Ga0308174_104065382 | 3300031939 | Soil | MAHEEEPLLASPPTQEMAVHVRDYARFTRLLKIGAFTCLIIGFIVLLILK |
Ga0307409_1002629481 | 3300031995 | Rhizosphere | EPLLADPPSAEAAYHVRDYERFTKLLKYSALVCLAIAFLVVLIIS |
Ga0307409_1015537761 | 3300031995 | Rhizosphere | MAHDEEPLLADPPSAEAAYHVRDYERFTKLLKYSALVCLAIAFLVVL |
Ga0307409_1015544852 | 3300031995 | Rhizosphere | MAHDEEPLLAHPPTAEVAHHVEDYERFTKLLKYSALVCLAIAFLVVLIIS |
Ga0307411_100240661 | 3300032005 | Rhizosphere | MAHDEEPLLADPPSAEAGYHVRDYERFTTLLKYSAIAC |
Ga0307411_100316701 | 3300032005 | Rhizosphere | WRNRMAHDEEPLLADPPSAEAGYHVRDYERFTTLLKYSAIACLVIAFLVVLIIS |
Ga0307411_104727971 | 3300032005 | Rhizosphere | MAHDEEPLLADPPSAEAAYHVRDYERFTKLLKYGAIVCLVIAFIVVMLIS |
Ga0307415_1000703173 | 3300032126 | Rhizosphere | DQGSEMAEEEEPLLAHPPTHEAAAHVRDYERFTKLIKWGALAALVVAFGVLMIL |
Ga0310810_113692191 | 3300033412 | Soil | MADDEESLLASPPTQEAAFHVQDYLRFTQIMKWGALTCLVIGFVVLLILR |
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