Metagenome Family F105852

Basic Information
Family ID	F105852
Family Type	Metagenome
Number of Sequences	100
Average Sequence Length	50 residues
Representative Sequence	MAHEEEPLLAHPPTQEVAVHVRDYERFTKLFKYGALTCLVIGFVVLLILK
Number of Associated Samples	81
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	76.00 %
% of genes near scaffold ends (potentially truncated)	38.00 %
% of genes from short scaffolds (< 2000 bps)	89.00 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere (14.000 % of family members)
Environment Ontology (ENVO)	Unclassified (50.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (46.000 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.59% β-sheet: 0.00% Coil/Unstructured: 56.41%
Feature Viewer

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Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF05222	AlaDh_PNT_N	47.00
PF00072	Response_reg	16.00
PF00158	Sigma54_activat	10.00
PF01266	DAO	4.00
PF00106	adh_short	1.00
PF04073	tRNA_edit	1.00
PF01894	UPF0047	1.00
PF00809	Pterin_bind	1.00
PF02954	HTH_8	1.00
PF11967	RecO_N	1.00
PF01408	GFO_IDH_MocA	1.00

COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG0432	Thiamin phosphate synthase YjbQ, UPF0047 family	Coenzyme transport and metabolism [H]	1.00

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	99.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	98.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	93.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	93.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	91.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Sphingomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas	44.00 %
Sphingomonas segetis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis	2.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Sphingomonas sp. URHD0007	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	40.00 %
Sphingomonas sp. URHD0057	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	3.00 %
Sphingomonas segetis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis	2.00 %
Sphingomonas sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	1.00 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886011\|MRS1b_contig_6013010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	876	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100538122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1285	Open in IMG/M
3300000955\|JGI1027J12803_107846004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	667	Open in IMG/M
3300004114\|Ga0062593_100058798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2457	Open in IMG/M
3300004156\|Ga0062589_102587270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	526	Open in IMG/M
3300004463\|Ga0063356_100850636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1280	Open in IMG/M
3300004463\|Ga0063356_100967255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1211	Open in IMG/M
3300004480\|Ga0062592_100544604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	971	Open in IMG/M
3300005171\|Ga0066677_10694528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	570	Open in IMG/M
3300005179\|Ga0066684_10604125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	737	Open in IMG/M
3300005181\|Ga0066678_10681104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	685	Open in IMG/M
3300005187\|Ga0066675_11001658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	628	Open in IMG/M
3300005328\|Ga0070676_10166563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	1422	Open in IMG/M
3300005330\|Ga0070690_100908471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	689	Open in IMG/M
3300005331\|Ga0070670_100309318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	1383	Open in IMG/M
3300005333\|Ga0070677_10538817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	638	Open in IMG/M
3300005334\|Ga0068869_100062056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	2742	Open in IMG/M
3300005340\|Ga0070689_100985626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	749	Open in IMG/M
3300005340\|Ga0070689_100997135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	745	Open in IMG/M
3300005366\|Ga0070659_101864758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	539	Open in IMG/M
3300005367\|Ga0070667_101332491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	673	Open in IMG/M
3300005436\|Ga0070713_102102041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	547	Open in IMG/M
3300005457\|Ga0070662_100199674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1586	Open in IMG/M
3300005534\|Ga0070735_10204507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1207	Open in IMG/M
3300005575\|Ga0066702_10236828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1112	Open in IMG/M
3300005575\|Ga0066702_10259452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1060	Open in IMG/M
3300005617\|Ga0068859_100636147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1159	Open in IMG/M
3300005618\|Ga0068864_102095061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	572	Open in IMG/M
3300005764\|Ga0066903_104381110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	754	Open in IMG/M
3300006061\|Ga0081201_120589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	565	Open in IMG/M
3300006169\|Ga0082029_1091666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	3777	Open in IMG/M
3300006169\|Ga0082029_1763978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	853	Open in IMG/M
3300006175\|Ga0070712_100376229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1168	Open in IMG/M
3300006195\|Ga0075366_10175446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1301	Open in IMG/M
3300006755\|Ga0079222_12122080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	556	Open in IMG/M
3300006796\|Ga0066665_11147220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	592	Open in IMG/M
3300006797\|Ga0066659_11701682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	532	Open in IMG/M
3300006806\|Ga0079220_12000402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	517	Open in IMG/M
3300006904\|Ga0075424_100570802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	1208	Open in IMG/M
3300006954\|Ga0079219_12491670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	503	Open in IMG/M
3300009137\|Ga0066709_101486542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	978	Open in IMG/M
3300009177\|Ga0105248_12460227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	593	Open in IMG/M
3300010044\|Ga0126310_11505043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	552	Open in IMG/M
3300010366\|Ga0126379_11388036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	808	Open in IMG/M
3300010396\|Ga0134126_11822102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	667	Open in IMG/M
3300012202\|Ga0137363_10713515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	849	Open in IMG/M
3300012210\|Ga0137378_11386613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	617	Open in IMG/M
3300012353\|Ga0137367_10905512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	607	Open in IMG/M
3300012359\|Ga0137385_11132548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	643	Open in IMG/M
3300013296\|Ga0157374_12375537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	557	Open in IMG/M
3300013296\|Ga0157374_12670010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	527	Open in IMG/M
3300013297\|Ga0157378_12333149	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	587	Open in IMG/M
3300013306\|Ga0163162_10788173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	1068	Open in IMG/M
3300014487\|Ga0182000_10110404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	938	Open in IMG/M
3300015371\|Ga0132258_10022904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	13697	Open in IMG/M
3300015374\|Ga0132255_101760444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	941	Open in IMG/M
3300017947\|Ga0187785_10644522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	550	Open in IMG/M
3300018433\|Ga0066667_11135002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	677	Open in IMG/M
3300018468\|Ga0066662_10053774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2585	Open in IMG/M
3300018468\|Ga0066662_10304721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1341	Open in IMG/M
3300018468\|Ga0066662_12856977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	512	Open in IMG/M
3300025315\|Ga0207697_10022714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2569	Open in IMG/M
3300025315\|Ga0207697_10077360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1399	Open in IMG/M
3300025321\|Ga0207656_10233029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	898	Open in IMG/M
3300025321\|Ga0207656_10403486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	687	Open in IMG/M
3300025911\|Ga0207654_10689641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	733	Open in IMG/M
3300025919\|Ga0207657_10161221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1821	Open in IMG/M
3300025924\|Ga0207694_10250307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	1450	Open in IMG/M
3300025929\|Ga0207664_10833929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	829	Open in IMG/M
3300025972\|Ga0207668_11296870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	655	Open in IMG/M
3300025986\|Ga0207658_11685655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	579	Open in IMG/M
3300026095\|Ga0207676_10206594	All Organisms → cellular organisms → Bacteria → Proteobacteria	1739	Open in IMG/M
3300026116\|Ga0207674_11739037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	591	Open in IMG/M
3300026116\|Ga0207674_11888243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	563	Open in IMG/M
3300026118\|Ga0207675_101584826	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300026118\|Ga0207675_102725107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	502	Open in IMG/M
3300026142\|Ga0207698_10300955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	1493	Open in IMG/M
3300027750\|Ga0209461_10037955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	942	Open in IMG/M
3300027750\|Ga0209461_10092348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	676	Open in IMG/M
3300027986\|Ga0209168_10097133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	1522	Open in IMG/M
3300028889\|Ga0247827_10077428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1604	Open in IMG/M
3300030496\|Ga0268240_10150291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	574	Open in IMG/M
3300031548\|Ga0307408_100034295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	3554	Open in IMG/M
3300031548\|Ga0307408_101272963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	688	Open in IMG/M
3300031548\|Ga0307408_101574339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis	623	Open in IMG/M
3300031731\|Ga0307405_10043115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2750	Open in IMG/M
3300031731\|Ga0307405_11978054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	521	Open in IMG/M
3300031824\|Ga0307413_11392787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	616	Open in IMG/M
3300031852\|Ga0307410_11482895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	597	Open in IMG/M
3300031858\|Ga0310892_11261470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	528	Open in IMG/M
3300031938\|Ga0308175_101960597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	656	Open in IMG/M
3300031939\|Ga0308174_10406538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	1097	Open in IMG/M
3300031995\|Ga0307409_100262948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	1584	Open in IMG/M
3300031995\|Ga0307409_101553776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	689	Open in IMG/M
3300031995\|Ga0307409_101554485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	689	Open in IMG/M
3300032005\|Ga0307411_10024066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	3622	Open in IMG/M
3300032005\|Ga0307411_10031670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	3257	Open in IMG/M
3300032005\|Ga0307411_10472797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1054	Open in IMG/M
3300032126\|Ga0307415_100070317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	2457	Open in IMG/M
3300033412\|Ga0310810_11369219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis	546	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	52.00%
Environmental	Environmental	47.00%
Engineered	Engineered	1.00%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	52.00%
Terrestrial	Environmental → Terrestrial	47.00%
Industrial Production	Engineered → Industrial Production	1.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	47.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	30.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	19.00%
Phyllosphere	Host-Associated → Plants → Phyllosphere	2.00%
Roots	Host-Associated → Plants → Roots	1.00%
Engineered Product	Engineered → Industrial Production → Engineered Product	1.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	21.00%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	16.00%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.00%
Loam	Environmental → Terrestrial → Soil → Loam	8.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.00%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	2.00%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.00%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.00%
Unclassified	Engineered → Industrial Production → Engineered Product → Unclassified	1.00%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	21.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	16.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	14.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.00%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.00%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.00%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	2.00%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.00%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.00%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.00%
Unclassified	Engineered → Industrial Production → Engineered Product → Unclassified → Unclassified	1.00%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	14.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	5.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.00%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.00%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	3.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.00%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.00%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	2.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.00%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.00%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.00%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	2.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.00%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.00%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.00%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.00%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.00%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.00%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.00%
Petroleum Sediment	Engineered → Industrial Production → Engineered Product → Unclassified → Unclassified → Petroleum Sediment	1.00%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886011	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006061	Microbial communities from petroleum pipeline sediment, Khambat, Gujarat, India	Engineered	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006195	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027750	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030496	Bulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F105852

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
MRS1b_0763.00001260	2162886011	Miscanthus Rhizosphere	MAHDEEPLLADPPSAEAAYHVRDYERFTKLLKYGAIACLCIAFIVVMLIS
INPhiseqgaiiFebDRAFT_1005381222	3300000364	Soil	MAEEEPLLVSPPTQEVAAHVRDYERFTKLLKYGALXCLVIAFVVLLILK*
JGI1027J12803_1078460043	3300000955	Soil	MAEEEPLLVSPPTQEVAAHVRDYERFTKLLKYGALICLVI
Ga0062593_1000587983	3300004114	Soil	MAHDEEPLLADPPSAEAAYHVRDYERFTKLLKYGAIACLCIAFIVVMLIS*
Ga0062589_1025872702	3300004156	Soil	MAHDEEPLLAHPPTAEVAHHVEDYERFTKLLKYGAIACLAIGFLVVLIIS*
Ga0063356_1008506362	3300004463	Arabidopsis Thaliana Rhizosphere	MAHDEEPLLAHPPTQEVAHHVHDYERFTKLLKYGAIACLIIAFLVLLIIT*
Ga0063356_1009672552	3300004463	Arabidopsis Thaliana Rhizosphere	MAHDEEPLLADPPSAEAAYHVRDYEHFTKLLKYGAIACLVVAFIVIMLIS*
Ga0062592_1005446041	3300004480	Soil	MAHDEDPLLADPPSAEAAYHVRDYERFTKLLKYGAIACLCIAFIVVMLIS*
Ga0066677_106945281	3300005171	Soil	MAEEEPLLVSPPNQDTAVHVRDYLRFTKLLKWGFLTCLVIAFIVLLILKNG*
Ga0066684_106041251	3300005179	Soil	DRASKESFMAEEEPLLVSPPTQDTAVHVRDYLRFTKLLKWGFLTCLVIAFIVLLILKNG*
Ga0066678_106811041	3300005181	Soil	KPSTRRGLGRAASLVMDTPDRASKESLMAEEEPLLVSPPTQDTAVHVRDYLRFTKLLKWSFLTCLVIAFVVLLILKNG*
Ga0066675_110016581	3300005187	Soil	MAEEEPLLVSPPTQDTAVHVRDYLRFTKLLKWGFLTCLVIAFIVLLILKNG*
Ga0070676_101665633	3300005328	Miscanthus Rhizosphere	HMAHDEEPLLADPPSAEAAYHVRDYERFTKLLKYGAIACLCIAFIVVMLIS*
Ga0070690_1009084711	3300005330	Switchgrass Rhizosphere	PLRDAKGEIMAHEEEPLLAHPPTQEVAVHVRDYERFTKLFKYGALTCLVIGFVVLLILK*
Ga0070670_1003093182	3300005331	Switchgrass Rhizosphere	MAHDEEPLLADPPSAEAAYHVQDYERFTKLLKYGALICLAIAFLVVMIIS*
Ga0070677_105388172	3300005333	Miscanthus Rhizosphere	LLAHPPTAEVAHHVEDYERFTKLLKYGAIACLAIGFLVVLIIS*
Ga0068869_1000620561	3300005334	Miscanthus Rhizosphere	KDMADDESLLANPPTHEVAVHVHDYERFTKIMKWGALFCLVVGFVVLQIL*
Ga0070689_1009856261	3300005340	Switchgrass Rhizosphere	DAKGEIMAHEEEPLLAHPPTQEVAVHVRDYERFTKLFKYGALTCLVIGFVVLLILK*
Ga0070689_1009971352	3300005340	Switchgrass Rhizosphere	MADDESLLANPPTHEVAVHVHDYERFTKIMKWGALFCLVVGFVVLQIL*
Ga0070659_1018647581	3300005366	Corn Rhizosphere	MAHDEEPLLADPPSAEAAYHVRDYERFTKLLKYGALICLAIAFLVVMIIS*
Ga0070667_1013324912	3300005367	Switchgrass Rhizosphere	MAEEEPLLVSPPTQHVAVHVRDYVRFTKLLKWGALICLVIGFVVLLILK*
Ga0070713_1021020412	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MAHEEEPLLASPPTQEMAAHVHDYERFTRMIKYGAIACLIVGFIVLLILK*
Ga0070662_1001996742	3300005457	Corn Rhizosphere	MAHEEEPLLAHPPTQEVAVHVRDYERFTKLFKYGALTCLVIGFVVLLILK*
Ga0070735_102045072	3300005534	Surface Soil	MAEEEEPLLASPPTQEVAVHVADYERFTRMLKLGAITCLIIGFIVLLILK*
Ga0066702_102368282	3300005575	Soil	MAEEEPLLVSPPTQDAAAHVRDYLRFTKLLKWGFLTCLVIAFIVLLILKNG*
Ga0066702_102594522	3300005575	Soil	MAEEEPILVSPPTQEMAHHVADYARFTRMLKYGAFVCLIVGFIVLLILK*
Ga0068859_1006361472	3300005617	Switchgrass Rhizosphere	MAHDEEPLLADPPSAEAAYHVRDYERFTKLLKYGAIACLCIAFIVVML
Ga0068864_1020950611	3300005618	Switchgrass Rhizosphere	MADDESLLANPPTHEVAVHVHDYERFTKIMKWGALFCLVVGFVVLQ
Ga0066903_1043811101	3300005764	Tropical Forest Soil	MAEEEPLLVSPPTPEVAVHVRDYERFTKLLKWGALTCLAV
Ga0081201_1205892	3300006061	Petroleum Sediment	MAHDEEPLLANPPSAEAAYHVRDYERFTKLLKYGAIICFIIGFLVVLIIS*
Ga0082029_10916661	3300006169	Termite Nest	MAHDEEPLLADPPSAEAAYHVRDYEQFTKLLKYGALTCLVIAFLVVLIIS*
Ga0082029_17639782	3300006169	Termite Nest	MAHDEEPLLADPPSAEAAYHVRDYERFTKLLKYSALVCLAVAFLVVLIIS*
Ga0070712_1003762292	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MAEEEPLLVSPPTQEVAVHVRDYERFTKLLKWGALTCLIIGFSVLLILKS*
Ga0075366_101754462	3300006195	Populus Endosphere	MAEEEPLLVSPPSQDVAVHVRDYVRFTKLLKWGALICLVIGFAVLLILK*
Ga0079222_121220801	3300006755	Agricultural Soil	MMHEEEPLLASPPTQDMAVHVHDYMRFTKILKWGALFCLLVGFIVLLILK*
Ga0066665_111472202	3300006796	Soil	MAEEEPLLVSPPTQDTAVHVRDYLRFTKLLKWSFLTCLVIAFIVLLILKNG*
Ga0066659_117016821	3300006797	Soil	MAEEEPLLASPPTQDTAVHVRDYLRFTKLLKWGFLTCLVIAFVVLLI
Ga0079220_120004021	3300006806	Agricultural Soil	MPDLLDQEEEPLLVSPPTQEAAIHVKDYLRFTQLMKWGALTCLVIGFIVLLILK*
Ga0075424_1005708022	3300006904	Populus Rhizosphere	MAHEEEPLLVSPPTQEASVHVKDYLHFTKMMKWGALTCLVLGLISLIIVKAYW*
Ga0079219_124916702	3300006954	Agricultural Soil	MAEEEPLLVSPPTQDMAVHVHDYARFTRLMTRGAIACLIIGFIVLLILK*
Ga0066709_1014865422	3300009137	Grasslands Soil	MAEEEPILVSPPTQEMAHHVADYARFTRMLKWAALTCLIIGFVVLL
Ga0105248_124602271	3300009177	Switchgrass Rhizosphere	GIFMAHDEEPLLAHPPTAEVAHHVEDYERFTKLLKYGAIACLAIGFLVVLIIS*
Ga0126310_115050432	3300010044	Serpentine Soil	MAEEEESLLASPPTHEVATHVRDYEAFTRLFKYGAIICLIIGFIVLLILK*
Ga0126379_113880362	3300010366	Tropical Forest Soil	MAEEEPLLVSPPTQEVAVHVRDYERFTKLLKWGALTCLVIGFTVLLILKS*
Ga0134126_118221022	3300010396	Terrestrial Soil	MMAEEEPLLVSPPTQEVAAHVHDYERFTKLMKYGALICLVIGIVSLFII
Ga0137363_107135152	3300012202	Vadose Zone Soil	MAEEEEPILAHPGTHEVAVHVRDYERFTQMMKYGALICLIIGFIVLLILK*
Ga0137378_113866131	3300012210	Vadose Zone Soil	MDTADRASKESFMAEEERLLVSPSTQDTAVHVRDYLRFTKLLKWGFLTCLVIAFVVLLILKNG*
Ga0137367_109055122	3300012353	Vadose Zone Soil	MDTADRASKESFMAEEEPLLVSPPTQDTAVHVRDYLRFTKLLKWSFLTCLVIAFIVLLILKNG*
Ga0137385_111325481	3300012359	Vadose Zone Soil	MDTADRASKESLMAEEEPLLVSPPTQDTAVHVRDYLRFTKLLKWGFLTCLVIAFIVLLILKNG*
Ga0157374_123755372	3300013296	Miscanthus Rhizosphere	RDCQMAEEEPLLVSPPSQDVAVHVRDYVRFTKLLKWGALICLVIGFAVLLILK*
Ga0157374_126700102	3300013296	Miscanthus Rhizosphere	MVHYEEPLFADPPAAEAAYHVRDYERFTKLLKYGAIACLCIAFIVVMLIS*
Ga0157378_123331492	3300013297	Miscanthus Rhizosphere	AHDEEPLLADPPSAEAAYHVRDYERFTKLLKYGAIACLCIAFIVVMLIS*
Ga0163162_107881732	3300013306	Switchgrass Rhizosphere	MADDESLLANPPTHEVAVHVHDYERFTKIMKWGALFCLVVGFLVLQIL*
Ga0182000_101104042	3300014487	Soil	MAEEEPILVSPPTQEVAVHVRDYERFTRLLKYGAIACLIIGFIVLLILK*
Ga0132258_1002290416	3300015371	Arabidopsis Rhizosphere	MAHDEEPLLADPPTAEAAYHVQDYERFTKLLKYGALICLAIAFLVVMIIS*
Ga0132255_1017604442	3300015374	Arabidopsis Rhizosphere	MAHDEEPLLADPPKAEAAYHVQDYERFTKLLKYGALICLAIAFLVVMIIS*
Ga0187785_106445221	3300017947	Tropical Peatland	MAEEESILVSPPTQDMANHVHDYTNFTRLLKYGAFICLIIGFIVLLILKK
Ga0066667_111350022	3300018433	Grasslands Soil	MAEEEPLLVSPPTQDTAVHVRDYLRFTKLLKWGFLTCLVIAFIVLLILKNG
Ga0066662_100537741	3300018468	Grasslands Soil	MAEEEPLLVSPPTQDAAAHVRDYLRFTKLLKWGFLTCLVIAFIVLLILKNG
Ga0066662_103047211	3300018468	Grasslands Soil	MAEEEPILVSPPTQEMAHHVADYARFTRMLKYGAFVCLIVGFIVLLILK
Ga0066662_128569772	3300018468	Grasslands Soil	MAEEEPLLVSPPNQDTAVHVRDYLRFTKLLKWGFLTCLVIAFIVLLILKNG
Ga0207697_100227141	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MAHDEEPLLAHPPTAEVAHHVEDYERFTKLLKYGAIACLAIGFLVVLIIS
Ga0207697_100773602	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MAHDEEPLLADPPSAEAAYHVQDYERFTKLLKYGALICLAIAFLVVMIIS
Ga0207656_102330291	3300025321	Corn Rhizosphere	MAHDEEPLLADPPSAEAAYHVRDYERFTKLLKYGAIACLCIAF
Ga0207656_104034861	3300025321	Corn Rhizosphere	MAHDEEPLLADPGTQEMTVHVRDYDRFTKLMFRGAILCL
Ga0207654_106896412	3300025911	Corn Rhizosphere	MADDESLLANPPTHEVAVHVHDYERFTKIMKWGALFCLVVGFVVLQIL
Ga0207657_101612213	3300025919	Corn Rhizosphere	MAHEEEPLLAHPPTQEVAVHVRDYERFTKLFKYGALTCLVIGFVVLLILK
Ga0207694_102503072	3300025924	Corn Rhizosphere	METRNRKGRLMADDESLLTNPQTQDVAVHVNDYVRFTKLLKWGAVLCLLTGFIVLLIL
Ga0207664_108339292	3300025929	Agricultural Soil	MAHEEEPLLASPPTQEMAAHVHDYERFTRMIKYGAIACLIVGFIVLLILK
Ga0207668_112968702	3300025972	Switchgrass Rhizosphere	MADDESLLANPPTHEVAVHVHDYERFTKIMKWGAL
Ga0207658_116856551	3300025986	Switchgrass Rhizosphere	EEIHEGKDMADDESLLANPPTHEVAVHVHDYERFTKIMKWGALFCLVVGFVVLQIL
Ga0207676_102065941	3300026095	Switchgrass Rhizosphere	MAHDEEPLLGDPPSAEAAYHVQDYERFTKLLKYGALICL
Ga0207674_117390371	3300026116	Corn Rhizosphere	MAHDEEPLLADPPSAEAAYHVRDYERFTKLLKYGAIACLCIAFIVVM
Ga0207674_118882431	3300026116	Corn Rhizosphere	DDESLLANPPTHEVAVHVHDYERFTKIMKWGALFCLVVGFVVLQIL
Ga0207675_1015848262	3300026118	Switchgrass Rhizosphere	PLLADPPSAEAAYHVRDYERFTKLLKYGAIACLCIAFIVVMLIS
Ga0207675_1027251072	3300026118	Switchgrass Rhizosphere	MAHDEEPLLAHPPTAEVAHHVEDYERFTKLLKYGAIACLAIG
Ga0207698_103009552	3300026142	Corn Rhizosphere	MAEEESLLVSPPTHDVAAHVRDYERFTKLMFRGAVICLIVGLVSLMFIKAYW
Ga0209461_100379551	3300027750	Agave	RHLKGIKMAHDEEPLLAHPPTAEVAHHVQDYERFTKLLKYGALICLAIAFLVVLIIS
Ga0209461_100923482	3300027750	Agave	MAHDEEPLLANPPTHEVAVHVRDYERFTRLFKYGALTCLVIGFFVLLIL
Ga0209168_100971332	3300027986	Surface Soil	MAEEEEPLLASPPTQEVAVHVADYERFTRMLKLGAITCLIIGFIVLLILK
Ga0247827_100774282	3300028889	Soil	MAHDEEPLLADPPSAEAAYHVRDYEQFTKLLKYGAIVCLIIAFIVVMLIS
Ga0268240_101502911	3300030496	Soil	MAHDEEPLLADPPSAEAAYHVRDYERFTKLLKYGAITCLIIAFIVVMLIS
Ga0307408_1000342952	3300031548	Rhizosphere	MAHDEEPLLADPPSAEAAYHVRDYERFTKLLKYSALVCLAIAFLVVLIIS
Ga0307408_1012729632	3300031548	Rhizosphere	MAEEEEPLLAHPPTHEVATHVRDYERFTKLLKWGAL
Ga0307408_1015743392	3300031548	Rhizosphere	MAEEEEPLLAHPGSPEVATHVRDYERFTRLLKIGALTCLVIAFIV
Ga0307405_100431152	3300031731	Rhizosphere	MAEEEEPLLAHPGSPEVATHVRDYERFTRLLKIGALTCLVIAFIVLLIL
Ga0307405_119780541	3300031731	Rhizosphere	DRNKGIGMAEEEEPLLAHPPTHEVATHVRDYERFTKLLKWGALTCLVIAFIVLLIL
Ga0307413_113927871	3300031824	Rhizosphere	KRVWRNHMAHDEEPLLADPPSAEAAYHVRDYERFTKLLKYSALVCLAIAFLVVLIIS
Ga0307410_114828951	3300031852	Rhizosphere	YGTPTHRQLKGIKMAHDEEPLLAHPPTAEVAHHVEDYERFTKLLKYSALVCLAIAFLVVLIIS
Ga0310892_112614701	3300031858	Soil	LGAGRSPCYGPGKQIWRKHMAHDEEPLLADPPSAEAAYHVRDYERFTKLLKYGAIACLCIAFIVVMLIS
Ga0308175_1019605972	3300031938	Soil	MAHEEEPLLASPPTQEVATHVRDYEKFTRMMKWGALTCLIIGFIVLLILK
Ga0308174_104065382	3300031939	Soil	MAHEEEPLLASPPTQEMAVHVRDYARFTRLLKIGAFTCLIIGFIVLLILK
Ga0307409_1002629481	3300031995	Rhizosphere	EPLLADPPSAEAAYHVRDYERFTKLLKYSALVCLAIAFLVVLIIS
Ga0307409_1015537761	3300031995	Rhizosphere	MAHDEEPLLADPPSAEAAYHVRDYERFTKLLKYSALVCLAIAFLVVL
Ga0307409_1015544852	3300031995	Rhizosphere	MAHDEEPLLAHPPTAEVAHHVEDYERFTKLLKYSALVCLAIAFLVVLIIS
Ga0307411_100240661	3300032005	Rhizosphere	MAHDEEPLLADPPSAEAGYHVRDYERFTTLLKYSAIAC
Ga0307411_100316701	3300032005	Rhizosphere	WRNRMAHDEEPLLADPPSAEAGYHVRDYERFTTLLKYSAIACLVIAFLVVLIIS
Ga0307411_104727971	3300032005	Rhizosphere	MAHDEEPLLADPPSAEAAYHVRDYERFTKLLKYGAIVCLVIAFIVVMLIS
Ga0307415_1000703173	3300032126	Rhizosphere	DQGSEMAEEEEPLLAHPPTHEAAAHVRDYERFTKLIKWGALAALVVAFGVLMIL
Ga0310810_113692191	3300033412	Soil	MADDEESLLASPPTQEAAFHVQDYLRFTQIMKWGALTCLVIGFVVLLILR

Hidden Markov Model


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