NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F105866

Metagenome / Metatranscriptome Family F105866

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F105866
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 66 residues
Representative Sequence MAGTTEIPYVRKDETFKTWRERTNQMIQQQNNFVRMQEFLMLGVSDPYVTTSMQLNYMSEVSSE
Number of Associated Samples 76
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 93.00 %
% of genes near scaffold ends (potentially truncated) 8.00 %
% of genes from short scaffolds (< 2000 bps) 64.00 %
Associated GOLD sequencing projects 69
AlphaFold2 3D model prediction Yes
3D model pTM-score0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (80.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(27.000 % of family members)
Environment Ontology (ENVO) Unclassified
(64.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(66.000 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 48.91%    β-sheet: 0.00%    Coil/Unstructured: 51.09%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.45
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF16075DUF4815 10.00
PF09215Phage-Gp8 3.00
PF04965GPW_gp25 2.00
PF07995GSDH 1.00
PF16778Phage_tail_APC 1.00
PF11246Phage_gp53 1.00
PF01467CTP_transf_like 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG2133Glucose/arabinose dehydrogenase, beta-propeller foldCarbohydrate transport and metabolism [G] 1.00

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A80.00 %
All OrganismsrootAll Organisms20.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2061766003|GB_4MN_MetaGALL_nosff_rep_c214385Not Available545Open in IMG/M
2236876008|none_p144239Not Available522Open in IMG/M
3300000148|SI47jul10_100mDRAFT_c1054394Not Available511Open in IMG/M
3300000170|SI36aug09_135mDRAFT_c1035982Not Available729Open in IMG/M
3300000260|LP_A_09_P20_500DRAFT_1043002Not Available575Open in IMG/M
3300001515|KiloMoana_1079326All Organisms → Viruses → Predicted Viral1086Open in IMG/M
3300001683|GBIDBA_10004434Not Available10259Open in IMG/M
3300001683|GBIDBA_10007215Not Available7391Open in IMG/M
3300001683|GBIDBA_10008017Not Available6401Open in IMG/M
3300001683|GBIDBA_10008353Not Available6180Open in IMG/M
3300001683|GBIDBA_10010552Not Available6024Open in IMG/M
3300001683|GBIDBA_10010769Not Available11221Open in IMG/M
3300001683|GBIDBA_10049918Not Available1578Open in IMG/M
3300001683|GBIDBA_10238188Not Available742Open in IMG/M
3300002696|Ga0005228J37280_1091199Not Available714Open in IMG/M
3300003086|Ga0052187_10046Not Available50322Open in IMG/M
3300003153|Ga0052192_1194457Not Available545Open in IMG/M
3300003510|FS857DNA_1025633Not Available570Open in IMG/M
3300003539|FS891DNA_10566104Not Available652Open in IMG/M
3300003539|FS891DNA_10650623Not Available821Open in IMG/M
3300003540|FS896DNA_10651333Not Available793Open in IMG/M
3300003596|JGI26255J51710_1086872Not Available515Open in IMG/M
3300003937|Ga0063391_1000777Not Available23828Open in IMG/M
3300004280|Ga0066606_10356164Not Available512Open in IMG/M
3300005593|Ga0066837_10038327Not Available1846Open in IMG/M
3300005594|Ga0066839_10144790Not Available825Open in IMG/M
3300005603|Ga0066853_10004884All Organisms → Viruses → Predicted Viral4953Open in IMG/M
3300005969|Ga0066369_10051467All Organisms → Viruses → Predicted Viral1460Open in IMG/M
3300006077|Ga0081594_1021450All Organisms → Viruses → Predicted Viral4149Open in IMG/M
3300006077|Ga0081594_1030051All Organisms → Viruses → Predicted Viral3308Open in IMG/M
3300006078|Ga0081595_1002026Not Available6555Open in IMG/M
3300006079|Ga0081601_1030562All Organisms → Viruses → Predicted Viral1784Open in IMG/M
3300006166|Ga0066836_10020138All Organisms → Viruses → Predicted Viral3715Open in IMG/M
3300006166|Ga0066836_10306400Not Available952Open in IMG/M
3300006306|Ga0068469_1000579Not Available882Open in IMG/M
3300006326|Ga0068477_1068899Not Available596Open in IMG/M
3300006900|Ga0066376_10817624Not Available502Open in IMG/M
3300007504|Ga0104999_1000588Not Available54910Open in IMG/M
3300007510|Ga0105013_1075192All Organisms → Viruses → Predicted Viral2630Open in IMG/M
3300007756|Ga0105664_1009431Not Available913Open in IMG/M
3300007756|Ga0105664_1151618Not Available560Open in IMG/M
3300007758|Ga0105668_1111123Not Available829Open in IMG/M
3300007758|Ga0105668_1174017All Organisms → Viruses → Predicted Viral2272Open in IMG/M
3300007758|Ga0105668_1180214Not Available522Open in IMG/M
3300009106|Ga0117917_1037376All Organisms → Viruses → Predicted Viral2046Open in IMG/M
3300009173|Ga0114996_10001589Not Available30485Open in IMG/M
3300009173|Ga0114996_10005749Not Available14506Open in IMG/M
3300009173|Ga0114996_10774595Not Available696Open in IMG/M
3300009420|Ga0114994_10000600Not Available24646Open in IMG/M
3300009425|Ga0114997_10258641Not Available977Open in IMG/M
3300009593|Ga0115011_10002882Not Available11808Open in IMG/M
3300010883|Ga0133547_12125934Not Available1022Open in IMG/M
3300014818|Ga0134300_1005131Not Available6243Open in IMG/M
3300014973|Ga0134293_1008133Not Available1703Open in IMG/M
3300017775|Ga0181432_1289008Not Available520Open in IMG/M
3300020298|Ga0211657_1040833Not Available966Open in IMG/M
3300020298|Ga0211657_1043762Not Available921Open in IMG/M
3300020332|Ga0211502_1007362Not Available2519Open in IMG/M
3300020375|Ga0211656_10038001All Organisms → Viruses → Predicted Viral1603Open in IMG/M
3300020375|Ga0211656_10212497Not Available582Open in IMG/M
3300020383|Ga0211646_10063501All Organisms → Viruses → Predicted Viral1385Open in IMG/M
3300020389|Ga0211680_10160022Not Available889Open in IMG/M
3300020399|Ga0211623_10181163Not Available740Open in IMG/M
3300020415|Ga0211553_10189408Not Available839Open in IMG/M
3300020425|Ga0211549_10347515Not Available604Open in IMG/M
3300020443|Ga0211544_10114527Not Available1043Open in IMG/M
3300020443|Ga0211544_10269207Not Available672Open in IMG/M
3300020443|Ga0211544_10405578Not Available545Open in IMG/M
3300020447|Ga0211691_10351669Not Available589Open in IMG/M
3300020462|Ga0211546_10235238Not Available911Open in IMG/M
3300021334|Ga0206696_1215162Not Available894Open in IMG/M
3300022225|Ga0187833_10007894Not Available9534Open in IMG/M
(restricted) 3300024243|Ga0233436_1220266Not Available523Open in IMG/M
(restricted) 3300024255|Ga0233438_10320471Not Available588Open in IMG/M
3300025667|Ga0209043_1119224Not Available678Open in IMG/M
3300026079|Ga0208748_1061005Not Available1006Open in IMG/M
3300026254|Ga0208522_1070282All Organisms → Viruses → Predicted Viral1026Open in IMG/M
3300026321|Ga0208764_10006202Not Available6980Open in IMG/M
3300026321|Ga0208764_10292212Not Available786Open in IMG/M
3300027813|Ga0209090_10000139Not Available43376Open in IMG/M
3300027838|Ga0209089_10001236Not Available23371Open in IMG/M
3300027838|Ga0209089_10007968Not Available8341Open in IMG/M
3300027839|Ga0209403_10296453Not Available896Open in IMG/M
3300027906|Ga0209404_10034042All Organisms → Viruses → Predicted Viral2840Open in IMG/M
3300028190|Ga0257108_1173983Not Available619Open in IMG/M
3300028488|Ga0257113_1057062All Organisms → Viruses → Predicted Viral1248Open in IMG/M
3300028489|Ga0257112_10167712Not Available777Open in IMG/M
3300031140|Ga0308024_1026097All Organisms → Viruses → Predicted Viral1642Open in IMG/M
3300031606|Ga0302119_10015760All Organisms → Viruses → Predicted Viral3214Open in IMG/M
3300031606|Ga0302119_10018837Not Available2937Open in IMG/M
3300031625|Ga0302135_10427911Not Available503Open in IMG/M
3300031629|Ga0307985_10127606Not Available1013Open in IMG/M
3300031801|Ga0310121_10000898All Organisms → Viruses31629Open in IMG/M
3300031801|Ga0310121_10019528Not Available4970Open in IMG/M
3300031802|Ga0310123_10026347All Organisms → Viruses → Predicted Viral4133Open in IMG/M
3300031861|Ga0315319_10068058Not Available1694Open in IMG/M
3300032006|Ga0310344_10000259Not Available43721Open in IMG/M
3300032011|Ga0315316_10046317All Organisms → Viruses → Predicted Viral3453Open in IMG/M
3300032278|Ga0310345_10799884Not Available917Open in IMG/M
3300032278|Ga0310345_11982534Not Available566Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine27.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine16.00%
Hydrothermal Vent PlumeEnvironmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume9.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine6.00%
Background SeawaterEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater5.00%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater4.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine4.00%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine4.00%
Diffuse Hydrothermal Flow Volcanic VentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent4.00%
Diffuse Hydrothermal FluidEnvironmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Fluid3.00%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater2.00%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine2.00%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine2.00%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater2.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine2.00%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater1.00%
Water ColumnEnvironmental → Aquatic → Marine → Coastal → Unclassified → Water Column1.00%
Marine EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine Estuarine1.00%
Diffuse Hydrothermal FluidsEnvironmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Fluids1.00%
MarineEnvironmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine1.00%
Hydrothermal VentsEnvironmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vents1.00%
Hydrothermal Vent PlumeEnvironmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Hydrothermal Vent Plume1.00%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater1.00%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2061766003Hydrothermal vent microbial communities from Guaymas and Carmen Basins, Gulf of California, Sample 457EnvironmentalOpen in IMG/M
2236876008Marine microbial communities from Columbia River, CM, sample from Cape Meares, GS311-3LG-Deep1200EnvironmentalOpen in IMG/M
3300000148Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 47 07/07/10 100mEnvironmentalOpen in IMG/M
3300000170Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 36 08/11/09 135mEnvironmentalOpen in IMG/M
3300000260Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P20_500EnvironmentalOpen in IMG/M
3300001515Hydrothermal vent plume microbial communities from Kilo Moana, Pacific Ocean, of black smokersEnvironmentalOpen in IMG/M
3300001683Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assemblyEnvironmentalOpen in IMG/M
3300002696Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_100m_B (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300003086Marine viral communities from deep ocean hydrothermal plumes from the Lau and Guaymas BasinEnvironmentalOpen in IMG/M
3300003153Marine microbial communities from deep-sea hydrothermal vent plumes in the Guaymas BasinEnvironmentalOpen in IMG/M
3300003510Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS857_Anemone_DNAEnvironmentalOpen in IMG/M
3300003539Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS891_Anemone_DNAEnvironmentalOpen in IMG/M
3300003540Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS896_ElGuapo_DNAEnvironmentalOpen in IMG/M
3300003596Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI073_LV_135m_DNAEnvironmentalOpen in IMG/M
3300003937SPOT_150m_metagenome_yearEnvironmentalOpen in IMG/M
3300004280Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_100mEnvironmentalOpen in IMG/M
3300005593Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV86EnvironmentalOpen in IMG/M
3300005594Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV82EnvironmentalOpen in IMG/M
3300005603Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV61EnvironmentalOpen in IMG/M
3300005969Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_Bottom_ad_4513_LV_AEnvironmentalOpen in IMG/M
3300006077Microbial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea ? fluid BEnvironmentalOpen in IMG/M
3300006078Microbial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea ? fluid CEnvironmentalOpen in IMG/M
3300006079Microbial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea ? fluid DEnvironmentalOpen in IMG/M
3300006166Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV91EnvironmentalOpen in IMG/M
3300006306Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0500mEnvironmentalOpen in IMG/M
3300006326Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0770mEnvironmentalOpen in IMG/M
3300006900Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_AEnvironmentalOpen in IMG/M
3300007504Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate aEnvironmentalOpen in IMG/M
3300007510Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 250-2.7um, replicate aEnvironmentalOpen in IMG/M
3300007756Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDBack_2015_DNA CLC_assemblyEnvironmentalOpen in IMG/M
3300007758Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDPlume_2015_DNA CLC_assemblyEnvironmentalOpen in IMG/M
3300009106Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 295m, 2.7-0.2um, replicate aEnvironmentalOpen in IMG/M
3300009173Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134EnvironmentalOpen in IMG/M
3300009420Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152EnvironmentalOpen in IMG/M
3300009425Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136EnvironmentalOpen in IMG/M
3300009593Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 MetagenomeEnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300014818Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway - 0152 : 8 days incubationEnvironmentalOpen in IMG/M
3300014973Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway - 0116 : 2 days incubationEnvironmentalOpen in IMG/M
3300017775Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17EnvironmentalOpen in IMG/M
3300020298Marine microbial communities from Tara Oceans - TARA_B100000953 (ERX556051-ERR599128)EnvironmentalOpen in IMG/M
3300020332Marine microbial communities from Tara Oceans - TARA_B100000029 (ERX555956-ERR598975)EnvironmentalOpen in IMG/M
3300020375Marine microbial communities from Tara Oceans - TARA_B100000953 (ERX555974-ERR599132)EnvironmentalOpen in IMG/M
3300020383Marine microbial communities from Tara Oceans - TARA_B100000929 (ERX556043-ERR598971)EnvironmentalOpen in IMG/M
3300020389Marine microbial communities from Tara Oceans - TARA_B100000809 (ERX556139-ERR599008)EnvironmentalOpen in IMG/M
3300020399Marine microbial communities from Tara Oceans - TARA_B100000470 (ERX555969-ERR598947)EnvironmentalOpen in IMG/M
3300020415Marine microbial communities from Tara Oceans - TARA_B100001146 (ERX555973-ERR599166)EnvironmentalOpen in IMG/M
3300020425Marine microbial communities from Tara Oceans - TARA_B100001765 (ERX556083-ERR598964)EnvironmentalOpen in IMG/M
3300020443Marine microbial communities from Tara Oceans - TARA_B100001179 (ERX556000-ERR598944)EnvironmentalOpen in IMG/M
3300020447Marine microbial communities from Tara Oceans - TARA_B100000745 (ERX556090-ERR599159)EnvironmentalOpen in IMG/M
3300020462Marine microbial communities from Tara Oceans - TARA_B100001559 (ERX556040-ERR598986)EnvironmentalOpen in IMG/M
3300021334Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 500m 12015 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022225Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_400_PacBio MetaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300024243 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_150_MGEnvironmentalOpen in IMG/M
3300024255 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MGEnvironmentalOpen in IMG/M
3300025667Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_100m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300026079Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_Bottom_ad_4513_LV_A (SPAdes)EnvironmentalOpen in IMG/M
3300026254Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV86 (SPAdes)EnvironmentalOpen in IMG/M
3300026321Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV91 (SPAdes)EnvironmentalOpen in IMG/M
3300027813Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)EnvironmentalOpen in IMG/M
3300027838Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)EnvironmentalOpen in IMG/M
3300027839Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86 (SPAdes)EnvironmentalOpen in IMG/M
3300027906Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300028190Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_1000mEnvironmentalOpen in IMG/M
3300028488Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_1320mEnvironmentalOpen in IMG/M
3300028489Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_1000mEnvironmentalOpen in IMG/M
3300031140Marine microbial communities from water near the shore, Antarctic Ocean - #420EnvironmentalOpen in IMG/M
3300031606Marine microbial communities from Western Arctic Ocean, Canada - AG5_TmaxEnvironmentalOpen in IMG/M
3300031625Marine microbial communities from Western Arctic Ocean, Canada - CBN3_surfaceEnvironmentalOpen in IMG/M
3300031629Marine microbial communities from Ellis Fjord, Antarctic Ocean - #80EnvironmentalOpen in IMG/M
3300031801Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986EnvironmentalOpen in IMG/M
3300031802Marine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057EnvironmentalOpen in IMG/M
3300031861Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 3416EnvironmentalOpen in IMG/M
3300032006Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MGEnvironmentalOpen in IMG/M
3300032011Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416EnvironmentalOpen in IMG/M
3300032278Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MGEnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
GB_4MN_004128402061766003Hydrothermal VentsMANGIGTTEIPFVRKDETFKTWRERTNQMIQQQNNFVRLQELEMLGIADPYVTTSMQLNYLSEXSXE*K
none_14423912236876008Marine EstuarineMANGIGTTEIPFVRKDETFKSWRERTNQMIQQQNNFVRLQELEMLGIADPFVTTSMQLNYLIEVQSG
SI47jul10_100mDRAFT_105439413300000148MarineMATGTTTIPYVRKDETFKTWRERTNIMIQQQNNFVRMQEFEMLGVSDPYVTTSMQLNYTSELASE*
SI36aug09_135mDRAFT_103598223300000170MarineMALEVKDIPYVRKDDTFKTWRERTNQMIQQQNNYVRLQEFQMLGMSDEYVIASMQMNLVEITNQND*
LP_A_09_P20_500DRAFT_104300223300000260MarineMANTDIGFTQIPYVRKDDTFKEWRERTNLMIQQQNNFVLMQEFDMLGVSDPWVKTSMQLNYLGETET*
KiloMoana_107932623300001515Hydrothermal Vent PlumeMAGFTEIPYVRKDDTFKEWRERTNIMIQQQNNFVRMQEFNMLGVSDDFVTTAMQLNYSSELDDNTN*
GBIDBA_1000443423300001683Hydrothermal Vent PlumeMALGTTEIPFVRKDETFKTWRERTNQMIQQQNNFVRLQELEMLGVADPYVTTSMQLHYLSEISSE*
GBIDBA_1000721523300001683Hydrothermal Vent PlumeMASVRDIPYVRKDDTFKTWRERTNQMIQQQNNYVRLQEFQMLGMSDEYVVASMQMNLLTSNRI*
GBIDBA_1000801723300001683Hydrothermal Vent PlumeMATETGFTQIPYVRKDDTFKQWRERTNLMIQQQNNFVRMQEFDMLGVSDTFVTTSMQLNYSGETETTN*
GBIDBA_1000835333300001683Hydrothermal Vent PlumeMATELGFTQIPYVRKDDTFKEWRERTNLMIQQQNNFVKMQEFQMLGVSDDYVTTSMQLNYSGETE*
GBIDBA_1001055233300001683Hydrothermal Vent PlumeMAIGTVEIPYVRKDETFKTWRERTNQMIQQQNNFVRLQELEMLGIADPFVTTSMQLNYQELMLSE*
GBIDBA_1001076923300001683Hydrothermal Vent PlumeMATEDTGFTQIPYVRKDDTFKEWRERTNLMIQQQNNFVRMQEFDMLGVSDIWVKTSMQLNYSGETEN*
GBIDBA_1004991833300001683Hydrothermal Vent PlumeMANGIGTTEIPFVRKDETFKTWRERTNQMIQQQNNFVRLQELEMLGIADPYVTTSMQLNYLSEVSTE*
GBIDBA_1023818813300001683Hydrothermal Vent PlumeYVRKDDTFKEWRERTNLMIQQQNNFVRMQEFDMLGVSDTFVTTSMQLNYTGETETTN*
Ga0005228J37280_109119923300002696MarineMALGTTVIPYVRKDETFKTWRERTNLMIQQQNNFVRMQEFEMLGVSDTFVRTSMQLNYMSEVSSE*
Ga0052187_10046103300003086Hydrothermal Vent PlumeMATEDTGFTQIPYVRKDDTFKEWRERTNLMIQQQNNFVRMQEFDMLGVSDVWVKTSMQLNYSGETEN*
Ga0052192_119445723300003153MarineMANGIGTTEIPFVRKDETFKTWRERTNQMIQQQNNFVRLQELEMLGIADPYVTTSMQLNYLSEXSXEXK*
FS857DNA_102563313300003510Diffuse Hydrothermal Flow Volcanic VentALEVKDIPYVRKDDTFKTWRERTNQMIQQQNNYVRLQEFQMLGMSDEYVIASMQMNLVEITNSEE*
FS891DNA_1056610423300003539Diffuse Hydrothermal Flow Volcanic VentMALEVKDIPYVRKDDTFKTWRERTNQMIQQQNNYVRLQEFQMLGMSDEYVIASMQMNLVEITNSED*
FS891DNA_1065062313300003539Diffuse Hydrothermal Flow Volcanic VentMATEDIGFTQIPYVRKDDTFKEWRERTNLMIQQQNNFVRMQEFDMLGVSDVWVKTSMQLNYSGETEN*
FS896DNA_1065133333300003540Diffuse Hydrothermal Flow Volcanic VentMATTEDTGFTQIPYVRKDDTFKEWRERTNLMIQQQNNFVRMQEFDMLGVSDVWVKTSMQLNYSGETEN*
JGI26255J51710_108687223300003596MarineMATGTTTIPYVRKDETFKTWRERTNIMIQQQNNFVRMQEFEMLGVSDPYVTTSMQLNYTS
Ga0063391_100077753300003937MarineMAGTTTIPYVRKDETFKTWRERTNLMIQQQNNFVRMQEFEMLGVSDTYVTTSMQLNYTGELSSE*
Ga0066606_1035616423300004280MarineMALGTTVIPYVRKDETFKTWRERTNLMIQQQNNFVRMQEFEMLGVSDTFVRTSMQLNYMSEVSS
Ga0066837_1003832733300005593MarineMSNGVGTTEIPFVRKDETFKTWRERTNQMIQQQNNFVRLQELEMLGIADPYVTTSMQLNYLVEVQSE*
Ga0066839_1014479023300005594MarineMANGIGTTEIPFVRKDETFKTWRERTNQMIQQQNNFVRLQELEMLGIADPYVTTSMQLNYAGELLSE*
Ga0066853_1000488423300005603MarineMASGNTEIQYVRKDETFKTWRERTNQMIQQQNNFVRMQEFEMLGVSDPYVTTSMQLNYMSEVSSE*
Ga0066369_1005146733300005969MarineMASVGTTEIPFVRKDETFKTWRERTNQMIRQQNNFVRMQEFQMLGVSDPYVTTAMQLNYESELASE*
Ga0081594_102145023300006077Diffuse Hydrothermal FluidMATTEDTGFTQIPYVRKDDTFKEWRERTNLMIQQQNNFVRMQEFDMLGVGDVWVKTSMQLNYSGETEN*
Ga0081594_103005113300006077Diffuse Hydrothermal FluidMALEVKDIPYVRKDDTFKTWRERTNQMIQQQNNYVRLQEFQMLGMSDEYVIASMQMNLVEITNSEE*
Ga0081595_100202623300006078Diffuse Hydrothermal FluidsMAGTTEIPYVRKDDTFKEWRERTNIMIQQQNNFVRMQEFEMLGVSDSYVTTSMQLNYSGETENTN*
Ga0081601_103056233300006079Diffuse Hydrothermal FluidMALEVKDIPYVRKDDTFKTWRERTNQMIQQQNNYVRLQEFQMLGMSDEYVIASMQMNLVEITNQE*
Ga0066836_1002013833300006166MarineMANGIGTTEIPFVRKDETFKTWRERTNQMIQQQNNFVRLQELEMLGIADPYVTTSMQLNYLEELHDNGA*
Ga0066836_1030640023300006166MarineMAQQGYEIGQTEIPFVRKDETFKKWRERTNQMIQQQNNFVRLQELNMLGVADPFVTTSMQLNYQSEMLD*
Ga0068469_100057923300006306MarineMASVGTTEIPFVRKDETFKTWRERTNQMIQQQNNFVRMQEFAMLGVSDPYVTTSMQLNYEGELASE*
Ga0068477_106889913300006326MarineMASVGTTIIPFVRKDETFKTWRERTNVMIQQQNNFVRMQEFEMLGVSDPFVTTSMQLNYESELASE*
Ga0066376_1081762423300006900MarineMANIGTTEIPFVRKDETFKTWRERTNQMIQQQNNFVRMQEFAMLGVSDPYVTTSMQLNYQNELEASE*
Ga0104999_1000588473300007504Water ColumnMIGTTEIPYVRKDETFKTWRERTNQMIQQQNNFVRMQEFEMLGVSDPYVTTSMQLNYASETTD*
Ga0105013_107519223300007510MarineMATTETGFTQIPYVRKDDTFKEWRERTNLMIQQQNNFVKMQEFDMLGVNDTWVRTSMQLNYSGETEE*
Ga0105664_100943113300007756Background SeawaterMANTDIGFTQIPYVRKDDTFKEWRERTNLMIQQQNNFVLMQEFDMLGISDPWVKTSMQLNYLGETET*
Ga0105664_115161813300007756Background SeawaterMASVGTTQIPFVRKDETFKTWRERTNVMIQQQDNFVRMQEFEMLGVSDPYVTTSMQLNYESELASE*
Ga0105668_111112313300007758Background SeawaterMANVGTTEIPFVRKDETFKTWRERTNQMIQQQNNFVRMQEFNMLGVSDPYVTTSMQLNYAGELEASE*
Ga0105668_117401723300007758Background SeawaterMANTDIGFTQIPYVRKDDTFKEWRERTNLMIQQQNNFVLMQEFDMLGVSDPWVKTSMQLNYVGETET*
Ga0105668_118021413300007758Background SeawaterMALGTTVIPYVRKDETFKTWRERTNLMIQQQNNFVRMQEFEMLGVSDPYVRTSMQLNYMSEISSE*
Ga0117917_103737633300009106MarineMASEVKDIPYVRKDDTFKTWRERTNQMIQQQNNFVRLQEFNMLGMSDEFVVSAMQMNLVTEN*
Ga0114996_1000158943300009173MarineMANGVGTTEIPFVRKDETFKTWRERTNQMIQQQNNFVRLQELEMLGIADPYVTTSMQLNYLVEVSSE*
Ga0114996_1000574923300009173MarineMAIGTSEIPYVRKDETFKTWRERTNQMIQQQNNFVRLQELEMLGIADPYVTTSMQLNYQGIILTNGE*
Ga0114996_1077459523300009173MarineMANGIGTTEIPFVRKDETFKSWRERTNQMIQQQNNFVRLQELEMLGIADPYVTTSMQLNYLSEVSTE*
Ga0114994_1000060023300009420MarineMATGSTTIPYVRKDETFKTWRERTNQMIQQQNNFVRMQEFQMLGVSDTYVTTSMQLNYQSELASE*
Ga0114997_1025864123300009425MarineMASGTTEIPYVRKDETFKTWRERTNQMIQQQNNFVRMQEFEMLGVSDTYVTTSMQLNYSSENLVE*
Ga0115011_1000288243300009593MarineMANGIGTTEIPFVRKDETFKTWRERTNQMIQQQNNFVRLQELEMLGIADPYVTTSMQLNYLEELHDNG*
Ga0133547_1212593413300010883MarineMSVGTTEIPYVRKDETFKTWRERTNQMIQQQNNFVRLQELEMLGIADPYVTTSMQLNYLSEVSSE*
Ga0134300_100513123300014818MarineMSVGTTEIPFVRKDETFKTWRERTNQMIQQQNNFVRLQELEMLGIADPYVTTSMQLNYAGENLSE*
Ga0134293_100813333300014973MarineMSVGTTEIPFVRKDETFKTWLERTNQMIQQQNNFVRLQELEMLGIADPYVTTSMQLNYAGENLSE*
Ga0181432_128900813300017775SeawaterMANGVGTTEIPFVRKDETFKMWRERTNQMIQQQNNFVRLQELEMLGIADPYVTTSMQLNYLEELSDL
Ga0211657_104083323300020298MarineMAGTTEIPYVRKDETFKTWRERTNQMIQQQNNFVRMQEFLMLGVSDPYVTTSMQLNYMSEVSSE
Ga0211657_104376213300020298MarineANTDIGFTQIPYVRKDDTFKEWRERTNLMIQQQNNFVLMQEFDMLGVSDPWVKTSMQLNYLGETET
Ga0211502_100736233300020332MarineMAQQGYEIGQTEIPFVRKDETFKKWRERTNQMIQQQNNFVRLQELHMLGVADPFVTTSMQLNYQSEMLDQ
Ga0211656_1003800123300020375MarineMANTDIGFTQIPYVRKDDTFKEWRERTNLMIQQQNNFVLMQEFDMLGVSDPWVKTSMQLNYLGETET
Ga0211656_1021249723300020375MarineMALGTTVIPYVRKDETFKTWRERTNLMIQQQNNFVRMQEFNMLGVSDPYVTTSMQLNYMSEVSSE
Ga0211646_1006350123300020383MarineMASGNTEIQYVRKDETFKTWRERTNQMIQQQNNFVRMQEFEMLGVSDPYVTTSMQLNYMSEVSSE
Ga0211680_1016002223300020389MarineMASGTTEIPYVRKDETFKTWRERTNQMIQQQNNFVRLQEFEMLGVKDTFVTTSMQLNYQSEVSSE
Ga0211623_1018116313300020399MarineLVMALGNTEIAYVRKDETFKTWRERTNQMIQQQNNFVRMQEFQMLGVSDPYITTSMQLNYLSEVSSE
Ga0211553_1018940823300020415MarineMANGVGTTEIPFVRKDETFKTWRERTNQMIQQQNNFVRLQELEMLGVADPYVTTSMQLNYLVEVQSD
Ga0211549_1034751513300020425MarineMSLGTTEIPFVRKDETFKTWRERTNQMIQQQNNFVRLQELEMLGVADPYVTTSMQLHYLSEVQSE
Ga0211544_1011452723300020443MarineMSVGTPEIPFVRKDETFKTWRERTNQMIQQQNNFVRLQELHMLGIADHYVITSMQLNYQDEMLSE
Ga0211544_1026920723300020443MarineMASVGTTEIPFVRKDETFKTWRERTNQMIQQQNNFVRMQEFAMLGVSDPYVTTSMQLNYEGELASE
Ga0211544_1040557813300020443MarineMAGTTEIPYVRKDETFKTWRERTNVMIQQQNNFVRMQEFEMLGVSDSYVRTSMQLNYESELTSD
Ga0211691_1035166923300020447MarineMANGIGTTEIPFVRKDETFKSWRERTNQMIQQQNNFVRLQELEMLGIADPYVTTSMQLNYLQEVSSE
Ga0211546_1023523843300020462MarineMAQQGYEIGQTEIPFVRKDETFKKWRERTNQMIQQQNNFVRLQELHMLGVADPFVTTSM
Ga0206696_121516233300021334SeawaterMANTDIGFTQIPYVRKDDTFKEWRERTNLMIQQQNNFVLMQEFDMLGISDPWVKTSMQLNYLGETET
Ga0187833_1000789453300022225SeawaterMSVGTTEIPFVRKDETFKTWRERTNQMIQQQNNFVRLQELEMLGIADPYVITSMQLNYLQEVSSE
(restricted) Ga0233436_122026623300024243SeawaterMALEVKDIPYVRKDDTFKTWRERTNQMIQQQNNYVRLQEFQMLGMSDEYVIASMQMNLVEITNQND
(restricted) Ga0233438_1032047113300024255SeawaterMATGTTTIPYVRKDETFKTWRERTNIMIQQQNNFVRMQEFEMLGVSDPYVTTSMQLNYTSELASE
Ga0209043_111922423300025667MarineMALGTTVIPYVRKDETFKTWRERTNLMIQQQNNFVRMQEFEMLGVSDTFVRTSMQLNYMSEVSSE
Ga0208748_106100523300026079MarineMASVGTTEIPFVRKDETFKTWRERTNQMIRQQNNFVRMQEFQMLGVSDPYVTTAMQLNYESELASE
Ga0208522_107028223300026254MarineMSNGVGTTEIPFVRKDETFKTWRERTNQMIQQQNNFVRLQELEMLGIADPYVTTSMQLNYLVEVQSE
Ga0208764_1000620223300026321MarineMANGIGTTEIPFVRKDETFKTWRERTNQMIQQQNNFVRLQELEMLGIADPYVTTSMQLNYLEELHDNGA
Ga0208764_1029221223300026321MarineMAQQGYEIGQTEIPFVRKDETFKKWRERTNQMIQQQNNFVRLQELNMLGVADPFVTTSMQLNYQSEMLD
Ga0209090_1000013923300027813MarineMATGSTTIPYVRKDETFKTWRERTNQMIQQQNNFVRMQEFQMLGVSDTYVTTSMQLNYQSELASE
Ga0209089_1000123653300027838MarineMAIGTSEIPYVRKDETFKTWRERTNQMIQQQNNFVRLQELEMLGIADPYVTTSMQLNYQGIILTNGE
Ga0209089_1000796823300027838MarineMANGVGTTEIPFVRKDETFKTWRERTNQMIQQQNNFVRLQELEMLGIADPYVTTSMQLNYLVEVSSE
Ga0209403_1029645323300027839MarineMANGIGTTEIPFVRKDETFKSWRERTNQMIQQQNNFVRLQELEMLGIADPYVTTSMQLNYLSEVSTE
Ga0209404_1003404233300027906MarineMANGIGTTEIPFVRKDETFKTWRERTNQMIQQQNNFVRLQELEMLGIADPYVTTSMQLNYLEELHDNG
Ga0257108_117398313300028190MarineMALGTTVIPYVRKDETFKTWRERTNLMIQQQNNFVRMQEFEMLGVSDPYVRTSMQLNYMSEVSSE
Ga0257113_105706223300028488MarineMASVGTTQIPFVRKDETFKTWRERTNVMIQQQNNFVRMQEFEMLGVSDPYVTTSMQLNYESELASE
Ga0257112_1016771223300028489MarineMANGIGTTEIPFVRKDETFKSWRERTNQMIQQQNNFVRLQELEMLGIADPYVTTSMQLNYQDSILSE
Ga0308024_102609723300031140MarineMANGTTTIPYVRKDETFKTWRERTNVMIQQQNNFVRMQEFEMLGVSDPYVTTSMQLNYTSELASE
Ga0302119_1001576023300031606MarineMALGNTEIAYVRKDETFKTWRERTNQMIQQQNNFVRMQEFQMLGVSDPYVITSMQLNYLSEVSSE
Ga0302119_1001883723300031606MarineMALGTTEIPYVRKDETFKTWRERTNQMIQQQNNFVRMQEFEMLGVSDTYVTTSMQLNYSSENLVE
Ga0302135_1042791123300031625MarineMANGIGTTEIPFVRKDETFKTWRERTNQMIQQQNNFVRLQELEMLGIADPYVTTSMQLNYLSEVSSE
Ga0307985_1012760623300031629MarineMATTDIGFTQIPYVRKDDTFKEWRERTNLMIQQQNNFVAMQEFDMLGVSDSYVKTSMQLNYLDSSTD
Ga0310121_10000898233300031801MarineMASVGTTEIPFVRKDETFKTWRERTNQMIRQQNNFVRMQEFEMLGVSDPYVTTSMQLNYESELASE
Ga0310121_1001952833300031801MarineMALGTTEIPFVRKDETFKTWRERTNQMIQQQNNFVRLQELEMLGIADPYVTTSMQLNYQDSILSE
Ga0310123_1002634723300031802MarineMANIGTTEIPFVRKDETFKSWRERTNQMIQQQNNFVRLQELEMLGIADPYVTTSMQLNYLSEVSSE
Ga0315319_1006805823300031861SeawaterMALGTTEIPYVRKDETFKTWRERTNQMIQQQNNFVRLQEFEMIGVKDPFVTTSMQLNYLSEVQSD
Ga0310344_1000025933300032006SeawaterMAQQGYEIGQTEIPFVRKDETFKKWRERTNQMIQQQNNFVRLQELHMLGVADPFVTTSMQLNYQSEMLD
Ga0315316_1004631723300032011SeawaterMAGTTTIPYVRKDETFKTWRERTNLMIQQQNNFVRMQEFEMLGVSDTYVTTSMQLNYTGELSSE
Ga0310345_1079988433300032278SeawaterMAIGTAEIPYVRKDETFKTWRERTNQMIQQQNNFVRLQELEMLGVADPYVTTSMQLNYLVEVQSD
Ga0310345_1198253413300032278SeawaterMANGVGTTEIPFVRKDETFKMWRERTNQMIQQQNNFVRLQELEMLGIADPYVTTSMQLNY

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.