NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105949

Metagenome / Metatranscriptome Family F105949

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105949
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 58 residues
Representative Sequence MITQQHLASINRADRDLYAREKVLNSAIIAADISSGWEEYLEIFDAFYADHVEVSDGSES
Number of Associated Samples 78
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 98.97 %
% of genes near scaffold ends (potentially truncated) 91.00 %
% of genes from short scaffolds (< 2000 bps) 87.00 %
Associated GOLD sequencing projects 77
AlphaFold2 3D model prediction Yes
3D model pTM-score0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (86.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(30.000 % of family members)
Environment Ontology (ENVO) Unclassified
(46.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(60.000 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 51.14%    β-sheet: 0.00%    Coil/Unstructured: 48.86%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF13561adh_short_C2 76.00
PF12680SnoaL_2 6.00
PF00106adh_short 4.00
PF05368NmrA 2.00
PF028262-Hacid_dh_C 2.00
PF12867DinB_2 2.00
PF00440TetR_N 2.00
PF08240ADH_N 1.00
PF06059DUF930 1.00
PF13683rve_3 1.00
PF13602ADH_zinc_N_2 1.00


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms86.00 %
UnclassifiedrootN/A14.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001593|JGI12635J15846_10505795All Organisms → cellular organisms → Bacteria712Open in IMG/M
3300002245|JGIcombinedJ26739_101567113All Organisms → cellular organisms → Bacteria555Open in IMG/M
3300005538|Ga0070731_10311268All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1046Open in IMG/M
3300005538|Ga0070731_10528216Not Available785Open in IMG/M
3300005541|Ga0070733_10107527All Organisms → cellular organisms → Bacteria1785Open in IMG/M
3300005602|Ga0070762_10825020All Organisms → cellular organisms → Bacteria629Open in IMG/M
3300005921|Ga0070766_10259592All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1104Open in IMG/M
3300006050|Ga0075028_100968036All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium528Open in IMG/M
3300006102|Ga0075015_100751695All Organisms → cellular organisms → Bacteria582Open in IMG/M
3300006163|Ga0070715_10940438All Organisms → cellular organisms → Bacteria535Open in IMG/M
3300006176|Ga0070765_100554244All Organisms → cellular organisms → Bacteria1082Open in IMG/M
3300006176|Ga0070765_100878180Not Available847Open in IMG/M
3300006176|Ga0070765_101433155All Organisms → cellular organisms → Bacteria650Open in IMG/M
3300006176|Ga0070765_101709457Not Available591Open in IMG/M
3300009089|Ga0099828_10958785Not Available763Open in IMG/M
3300012176|Ga0153952_1077049All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium734Open in IMG/M
3300012917|Ga0137395_10672715Not Available749Open in IMG/M
3300012917|Ga0137395_11190395All Organisms → cellular organisms → Bacteria534Open in IMG/M
3300012927|Ga0137416_10462569All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1086Open in IMG/M
3300013306|Ga0163162_12488368All Organisms → cellular organisms → Bacteria595Open in IMG/M
3300014164|Ga0181532_10003761All Organisms → cellular organisms → Bacteria → Acidobacteria13550Open in IMG/M
3300014199|Ga0181535_10521765All Organisms → cellular organisms → Bacteria686Open in IMG/M
3300014501|Ga0182024_12100113All Organisms → cellular organisms → Bacteria621Open in IMG/M
3300014968|Ga0157379_11049223All Organisms → cellular organisms → Bacteria779Open in IMG/M
3300015242|Ga0137412_10154606All Organisms → cellular organisms → Bacteria1849Open in IMG/M
3300017935|Ga0187848_10385129All Organisms → cellular organisms → Bacteria578Open in IMG/M
3300017938|Ga0187854_10281215All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium715Open in IMG/M
3300018017|Ga0187872_10148728All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1122Open in IMG/M
3300018024|Ga0187881_10022913All Organisms → cellular organisms → Bacteria3397Open in IMG/M
3300018038|Ga0187855_10468998All Organisms → cellular organisms → Bacteria → Acidobacteria733Open in IMG/M
3300018044|Ga0187890_10141641All Organisms → cellular organisms → Bacteria1381Open in IMG/M
3300020021|Ga0193726_1057365All Organisms → cellular organisms → Bacteria1841Open in IMG/M
3300020579|Ga0210407_10350967All Organisms → cellular organisms → Bacteria → Acidobacteria1154Open in IMG/M
3300020580|Ga0210403_10084868All Organisms → cellular organisms → Bacteria2556Open in IMG/M
3300020582|Ga0210395_10055366All Organisms → cellular organisms → Bacteria2906Open in IMG/M
3300021088|Ga0210404_10149303All Organisms → cellular organisms → Bacteria → Acidobacteria1223Open in IMG/M
3300021170|Ga0210400_10266633All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1402Open in IMG/M
3300021170|Ga0210400_11200353All Organisms → cellular organisms → Bacteria611Open in IMG/M
3300021171|Ga0210405_10081024All Organisms → cellular organisms → Bacteria2558Open in IMG/M
3300021171|Ga0210405_10846873All Organisms → cellular organisms → Bacteria698Open in IMG/M
3300021180|Ga0210396_10841055Not Available785Open in IMG/M
3300021180|Ga0210396_11264346All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium615Open in IMG/M
3300021181|Ga0210388_10310229All Organisms → cellular organisms → Bacteria1386Open in IMG/M
3300021181|Ga0210388_10894554All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium765Open in IMG/M
3300021181|Ga0210388_11170395All Organisms → cellular organisms → Bacteria653Open in IMG/M
3300021401|Ga0210393_11076267All Organisms → cellular organisms → Bacteria649Open in IMG/M
3300021402|Ga0210385_10813814All Organisms → cellular organisms → Bacteria716Open in IMG/M
3300021402|Ga0210385_11437173All Organisms → cellular organisms → Bacteria527Open in IMG/M
3300021403|Ga0210397_10255824All Organisms → cellular organisms → Bacteria1272Open in IMG/M
3300021405|Ga0210387_10770616All Organisms → cellular organisms → Bacteria851Open in IMG/M
3300021406|Ga0210386_11036819All Organisms → cellular organisms → Bacteria → Acidobacteria698Open in IMG/M
3300021407|Ga0210383_11316640All Organisms → cellular organisms → Bacteria603Open in IMG/M
3300021420|Ga0210394_10365344All Organisms → cellular organisms → Bacteria1268Open in IMG/M
3300021432|Ga0210384_10036875All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae4519Open in IMG/M
3300021433|Ga0210391_10540125Not Available915Open in IMG/M
3300021433|Ga0210391_10594110Not Available869Open in IMG/M
3300021475|Ga0210392_11062771All Organisms → cellular organisms → Bacteria606Open in IMG/M
3300021477|Ga0210398_10504328Not Available985Open in IMG/M
3300021477|Ga0210398_10575834All Organisms → cellular organisms → Bacteria915Open in IMG/M
3300024227|Ga0228598_1084086All Organisms → cellular organisms → Bacteria639Open in IMG/M
3300025434|Ga0208690_1044584All Organisms → cellular organisms → Bacteria700Open in IMG/M
3300025612|Ga0208691_1023767All Organisms → cellular organisms → Bacteria1442Open in IMG/M
3300027064|Ga0208724_1003339All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1431Open in IMG/M
3300027072|Ga0208238_1001796All Organisms → cellular organisms → Bacteria → Proteobacteria1563Open in IMG/M
3300027109|Ga0208603_1025119All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium946Open in IMG/M
3300027334|Ga0209529_1016494All Organisms → cellular organisms → Bacteria1241Open in IMG/M
3300027635|Ga0209625_1138415All Organisms → cellular organisms → Bacteria545Open in IMG/M
3300027729|Ga0209248_10052954All Organisms → cellular organisms → Bacteria1244Open in IMG/M
3300027767|Ga0209655_10055807All Organisms → cellular organisms → Bacteria1315Open in IMG/M
3300027829|Ga0209773_10088838All Organisms → cellular organisms → Bacteria1270Open in IMG/M
3300027879|Ga0209169_10298471Not Available846Open in IMG/M
3300027884|Ga0209275_10233642All Organisms → cellular organisms → Bacteria1004Open in IMG/M
3300027884|Ga0209275_10323097All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium860Open in IMG/M
3300027884|Ga0209275_10757151All Organisms → cellular organisms → Bacteria560Open in IMG/M
3300027910|Ga0209583_10440980All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium630Open in IMG/M
3300028016|Ga0265354_1004897All Organisms → cellular organisms → Bacteria1380Open in IMG/M
3300028552|Ga0302149_1146326All Organisms → cellular organisms → Bacteria614Open in IMG/M
3300029636|Ga0222749_10095144All Organisms → cellular organisms → Bacteria1391Open in IMG/M
3300030020|Ga0311344_10981240All Organisms → cellular organisms → Bacteria662Open in IMG/M
3300030879|Ga0265765_1001723All Organisms → cellular organisms → Bacteria2039Open in IMG/M
3300030939|Ga0138303_1098409All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium662Open in IMG/M
3300031234|Ga0302325_10324768All Organisms → cellular organisms → Bacteria2471Open in IMG/M
3300031708|Ga0310686_110939837All Organisms → cellular organisms → Bacteria → Acidobacteria1025Open in IMG/M
3300031708|Ga0310686_110971587All Organisms → cellular organisms → Bacteria1680Open in IMG/M
3300031708|Ga0310686_119015865All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium822Open in IMG/M
3300031715|Ga0307476_10622393All Organisms → cellular organisms → Bacteria800Open in IMG/M
3300031718|Ga0307474_10023998All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4450Open in IMG/M
3300031718|Ga0307474_10145582All Organisms → cellular organisms → Bacteria1786Open in IMG/M
3300031718|Ga0307474_10702827All Organisms → cellular organisms → Bacteria → Acidobacteria799Open in IMG/M
3300031718|Ga0307474_11039146All Organisms → cellular organisms → Bacteria648Open in IMG/M
3300031740|Ga0307468_100788414All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium808Open in IMG/M
3300031753|Ga0307477_10792907All Organisms → cellular organisms → Bacteria630Open in IMG/M
3300031753|Ga0307477_10896244All Organisms → cellular organisms → Bacteria586Open in IMG/M
3300031754|Ga0307475_11548489All Organisms → cellular organisms → Bacteria508Open in IMG/M
3300031823|Ga0307478_10682074Not Available860Open in IMG/M
3300031962|Ga0307479_12087482All Organisms → cellular organisms → Bacteria515Open in IMG/M
3300032180|Ga0307471_100197596All Organisms → cellular organisms → Bacteria → Proteobacteria2008Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil30.00%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil13.00%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil10.00%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil7.00%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland6.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil6.00%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil5.00%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil3.00%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds3.00%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil3.00%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog2.00%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland2.00%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog2.00%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost1.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.00%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa1.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.00%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere1.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.00%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere1.00%
Attine Ant Fungus GardensHost-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006050Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014EnvironmentalOpen in IMG/M
3300006102Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013EnvironmentalOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300012176Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ036 MetaGHost-AssociatedOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300014164Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaGEnvironmentalOpen in IMG/M
3300014199Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015242Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300017935Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40EnvironmentalOpen in IMG/M
3300017938Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150EnvironmentalOpen in IMG/M
3300018017Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40EnvironmentalOpen in IMG/M
3300018024Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100EnvironmentalOpen in IMG/M
3300018038Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10EnvironmentalOpen in IMG/M
3300018044Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10EnvironmentalOpen in IMG/M
3300020021Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300024227Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4Host-AssociatedOpen in IMG/M
3300025434Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10 (SPAdes)EnvironmentalOpen in IMG/M
3300025612Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10 (SPAdes)EnvironmentalOpen in IMG/M
3300026374Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-AEnvironmentalOpen in IMG/M
3300027064Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF003 (SPAdes)EnvironmentalOpen in IMG/M
3300027072Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF013 (SPAdes)EnvironmentalOpen in IMG/M
3300027109Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008 (SPAdes)EnvironmentalOpen in IMG/M
3300027334Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027635Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027729Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027767Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027829Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027879Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)EnvironmentalOpen in IMG/M
3300027884Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)EnvironmentalOpen in IMG/M
3300027910Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)EnvironmentalOpen in IMG/M
3300028016Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1Host-AssociatedOpen in IMG/M
3300028552Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_1EnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030020II_Bog_N1 coassemblyEnvironmentalOpen in IMG/M
3300030879Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030939Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A9_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300031234Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2EnvironmentalOpen in IMG/M
3300031590Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12635J15846_1050579523300001593Forest SoilMITQQHLPSFERADRDLYAREKVLNSAIIAADISSGWEEYFEIFDAFYADDVEVTDGTESGAIFG
JGIcombinedJ26739_10156711323300002245Forest SoilMITQQHLASIKHADRDLYAREKVLNSAIIAADISSGWEEYLEIFNAFYADNV
Ga0070731_1031126833300005538Surface SoilMITQHHSASINRADRELHASEKVLNSAIIAADISSGWEAYLEIFD
Ga0070731_1052821623300005538Surface SoilMVTQQHLASFKRADRDLYAREDVLNSAIIAADISSGWEEYLEIFDAFY
Ga0070733_1010752713300005541Surface SoilMITQQHLASIHHADRDLYAREKILNSAIIAVDISSGWEAYLEIFDAFYADHVEVSDGTESGSVFGRE
Ga0070762_1082502023300005602SoilMITQQHLASFKHADRDIYAREKVLNSAIISADISSGWEEYLEIFDAFYA
Ga0070766_1025959233300005921SoilMITQQASIKHADCDLYAREKVLNSAIIASDISSGWEEYLQIFDAFYAD
Ga0075028_10096803623300006050WatershedsVNTQQASINNADRDLYAREKVLNSAIIAVDISSGWEAYLEIFDAFYAD
Ga0075015_10075169523300006102WatershedsMITQQHLPSFERADRDLYAREKVLNSAIIAADISSGWEEYLEIFDAFYADHVEAADGTESSAVFG
Ga0070715_1094043823300006163Corn, Switchgrass And Miscanthus RhizosphereMITQQHLASFKHADRDMYAREKVLNSAIISADISSGWEEYLEILDAFYANHVEVTDGTGSSAVFGKERA
Ga0070765_10055424433300006176SoilMITQQQSPSLKHADRDLYAREKVLNSAIIAADISSGWEEYLEIFDAFYADHVEVSDGTEG
Ga0070765_10087818023300006176SoilMIVQQHLASFKHADRDLYAREKVLNSAIIAADISSGWEEYLEIFDAFYADHVEVSDGTE
Ga0070765_10143315523300006176SoilMITQQHLASFKRADSDLYAREKVLNSAIIAADISSGWEEYLEIFDAFYADDVE
Ga0070765_10170945723300006176SoilMISQQVSINRADRDLHAREKILNSAIIAVDISSGWETYLEILDTFYADHVEVSDGTESG
Ga0099828_1095878523300009089Vadose Zone SoilMSMSTQQHLASVNYADRDLYARERVLNSAIIAADISRGWEEYLEILDAFYADHVEVTDGTESGEI
Ga0153952_107704923300012176Attine Ant Fungus GardensMITEQHLASTNRANRDLYAREKVLNSAIIAADISSGWEAYLEILDAFYADHVEVSDGTER
Ga0137395_1067271513300012917Vadose Zone SoilLASIKHADSDLYAREKVLNSAVIAADISSGWEEYIEIVGAFYADH
Ga0137395_1119039523300012917Vadose Zone SoilMSMSTQQLLASVNYADHDLYARERVLNSAIIAADISRGWEEYLEILDAFYADHVEVTDGTESGEIFGRER
Ga0137416_1046256913300012927Vadose Zone SoilMITQQASINHADRDLYARDKVLNSAIIAADISSGWETYLEIFDAFYADH
Ga0163162_1248836823300013306Switchgrass RhizosphereMVTQQHLASFKRADRDLYALEEVLKSAIIAADISGGWEEYLEIFDAFYSDHVEVTDGTENSAVLGKERMRS
Ga0181532_1000376113300014164BogMITQQHLASTNRANRDLYAREKVLNSAIIAADISSGWEAYLEIFDAFYADHVEVS
Ga0181535_1052176523300014199BogMVVQQHLASVKHADRDIYAREKVLNAAIIAADISSGWEEYIEIFDAFYADNVEVSDGTEN
Ga0182024_1210011313300014501PermafrostMIAQQHLASFKHADRDPYAREKVLNSAIIAVDISSGWEEYLEIFDAFYADDVEVTDGTENSAVFGKERMRAL
Ga0157379_1104922323300014968Switchgrass RhizosphereMITQQHLASFKHADGDMYAREKVLNSAIISTDISSGWEEYLEILDAFYADHVEVTDGTGISVVFGKERAR
Ga0137412_1015460613300015242Vadose Zone SoilMSAQYHSASFSHADRDLYTRESVLNSAIIGADISRGWEEYFEIFDAFYADHVEVTDGTDSGAV
Ga0187848_1038512913300017935PeatlandMIAQQHLASFKRADRDLYAREKVLNSAIIAADISSGWEEYFEIFDAFYADDVEVTDGTESGA
Ga0187854_1028121523300017938PeatlandMITQQHLASIRRADRDLYAREKVLNSAIIAADISSGWEAYLEIFDAFYADHVEVSDG
Ga0187872_1014872833300018017PeatlandMITQQHLASIHRADRDLYAREKVLNSAIIAADISSGWEAYLEIFDAFY
Ga0187881_1002291363300018024PeatlandMIAQQHLASIKHADRDLYAQEKVLNSAIIAADIRSGWEEYLEIFDAFYTDDVEVTDGT
Ga0187855_1046899823300018038PeatlandMIVQQHLASFKHADRDLYAREKVLNSAIIAADISSGWEEYLEIFDAFYADDVEVT
Ga0187890_1014164113300018044PeatlandMIAQQHLASFKRADRDLYAREKVLNSAIIAADISSGWEAYLEIFDAFYADHVEVSDGTENGPVFGRERIR
Ga0193726_105736533300020021SoilMITQQHLASIKRADRNLYAREKVLNSVIIAADISSGWEEYLQIFDVFYADPSERRLHSGP
Ga0210407_1035096743300020579SoilMISQQVSINRADRDLHAREKVLNSAIIAVDISSGWETYLEILDTFYADHVEVSDGTESGPVVGRE
Ga0210403_1008486843300020580SoilMIAQQHLASFKHADRDLYAREKVLNSAIIAADISSGWEEYLEIFDAFYADAVEVSD
Ga0210395_1005536613300020582SoilMSVNTQQASINNADRDLYAREKVLNSAIIAVDISSGWEAYLEIFDAF
Ga0210404_1014930343300021088SoilMITQQHFISINRADRDLYATEKVLNSAIIAADISSGWEEYLQILDAFYADSVEV
Ga0210400_1026663313300021170SoilMITQQHLASTNRANRDLYAREKVLNSAIIAADISSGWEAYLEIFDAFYADHVEVSDGTESGSVSGR
Ga0210400_1120035323300021170SoilMITQQHLASFKHADRDIYAREKVLNSTIISADISSGWEEYLEIFDAFYANHVEVTDWTESSAVLGKDR
Ga0210405_1008102413300021171SoilMITQQHLASIHHADRDLYAREKILNSAIIAVDISSGWEAYLEIFDAFY
Ga0210405_1084687313300021171SoilMIPQQHLASFKRTDRDLFAREKVLNSAIIAADISSGWEEYLEIFDAFYADDVEITDGTESGAVFG
Ga0210396_1084105513300021180SoilMITQQHLASTNRANRDLYAREKVLNSAIIAADISSGWEAYLEIFDAFYADHVEVSDGTENGP
Ga0210396_1126434613300021180SoilMITQQHLASINRADRDLYAREKVLNSAIIAADISSGWEEYLEIFDAFYADHVEVSDGSES
Ga0210388_1031022913300021181SoilMSMITQQHSAPVNHAGRDLHARERVLNSAILAADISSGWEEYLEIFDAFYADDVSVSDGTES
Ga0210388_1089455423300021181SoilMITQQHLASTNRANRDLYAREKVLNSAIIAADISSGWEAYLEIFDAF
Ga0210388_1117039513300021181SoilVITQQHVASAKRAGHDLYAREKVLNSAIIAADISSGWEEYLEIFDAFYADHV
Ga0210393_1107626713300021401SoilMNTQHLASFKHADRDLYAREEVLNSAIIAADISSGWEEYLEIFDAFYADDVEI
Ga0210385_1081381413300021402SoilMNTQHLASFKHADRDLYAREEVLNSAIIAADISSGWEEYLEIFDAFYSDHVEVTD
Ga0210385_1143717313300021402SoilVITQQHVASAKRAGHDLYAREKVLNSAIIAADISSGWEEYLEIFDAFYADDVEVTDATESSAVF
Ga0210397_1025582443300021403SoilMITQQHLASINRADRDLYAREKVLNSAIIAADISSGWEEYLQILDAFYADH
Ga0210387_1077061613300021405SoilMIAQQRLASFKRADRDLYAREKVLNSAIIAADISIGWEEYLEIFDAFYADDVEITDGTES
Ga0210386_1103681933300021406SoilMITQQHFISINRADRDLYATEKVLNSAIIAADISSGWEEYLQILDAFYADSVEVSDGT
Ga0210383_1131664023300021407SoilMITQQHLASFKCADRDLYAREKVLNSAIIAADISSGWEEYFEIFDAFYADDVEVTDGTESSA
Ga0210394_1036534433300021420SoilMITQQHLASVHRADRDVSAREKVLNSAIIAADISSGWEEYLQIFDAFYADQ
Ga0210384_1003687583300021432SoilMITQQASINRADRDLYAREKVLNSAIIAADIRSGWEEYLQILDVFYADHI
Ga0210391_1054012523300021433SoilMVTHLASIKHADRDLYAREKVLNSAIVGADISSGWEEYLQIFDAFYAGHVEVSDGT
Ga0210391_1059411013300021433SoilMSTQQYLASSSYADHSLYARERVLNSAIIAADISRGWEEYLEIFDAFYADHVE
Ga0210392_1106277123300021475SoilMITQQHLASFKHADRDLYAPEKVLNSAIIAADISSGWEEYLEIFDAFYADDVEVTDGAASSAVFGKEP
Ga0210398_1050432823300021477SoilMIPQQHLASFKHADRDLYAREEVLNSAIIAADISSGWEEYLEIFDAFYSDHIEVTDGTESSAVIGKER
Ga0210398_1057583423300021477SoilMITQQHLASIKRADLDLYAREKVLNSAMIAADISSGWEEYLEIFDAFYADHVEVSDGTEGGAVFGKE
Ga0228598_108408613300024227RhizosphereMIPQQHLASFKRADRDLFAREKVLNSAIIVADISSGWEEYLEIFDAFYADDVEITDGTES
Ga0208690_104458413300025434PeatlandMIVQQHLASFKHADRDLYAREKVLNSAIIAADISSGWEEYLEIFDAFYADDVEVTDGTESSAIFGKEQ
Ga0208691_102376713300025612PeatlandMITQQHLASIHRADRDLYAREKVLNSAIIAADISSGWEAYLEIFDAFYADHVEF
Ga0257146_104609213300026374SoilMSMSAQHHFAPGDQGDRDLYARERVLNSAIIAADISRGWEEYLEILEAFYADHVEVTDGTESG
Ga0208724_100333933300027064Forest SoilMITQQHSTSIKHADRDLYAREKVLNSAIIAADISSGWEEYLELFDAFYADAVEVGDG
Ga0208238_100179633300027072Forest SoilMITQQHLASINRADRDLYAREKVLNSAIIAADISSGWEAYLEILDAFYADHVEVSDGTES
Ga0208603_102511913300027109Forest SoilMITQQHLASIHHADRDLYAREKILNSAIIAVDISSGWEEYLQIFDTFYADQVEVSDGTERGAVCGRER
Ga0209529_101649443300027334Forest SoilMITQQHLASIHRADRDLYAREKVLNSAIIAADISSGWEAYLEIF
Ga0209625_113841513300027635Forest SoilMITQQHLASIHRADRDLYAREKVLNSAIISADISSGWEEYLEIFDAFYAKHVE
Ga0209248_1005295413300027729Bog Forest SoilMITQQRLASINRADRDLYAREKVLNSAILAADISSGWEAYGEIFDAFYAD
Ga0209655_1005580713300027767Bog Forest SoilMSTQQNLASINHADRDLCARERVLNSAIIAADISSGWDEHLEIFDAFYADHVEVTDGTESGAVF
Ga0209773_1008883833300027829Bog Forest SoilMITQQRLASINRADRDLYAREKVLNSAILAADISSSWEAYGEIFDAFYAD
Ga0209169_1029847113300027879SoilMIPQQHLASFKHADRDLYAREEVLNSAIIAADISSGWEEYLEIFDAFYSDHI
Ga0209275_1023364213300027884SoilMIPQQHLASFKRTDRDLFAREKVLNSAIIAADISSGWEEYLEIFDAFYADDVEITDGT
Ga0209275_1032309713300027884SoilMITQQHLASTNRANRDLYAREKVLNSAIIAADISSGWEAYLEIFDAFYA
Ga0209275_1075715113300027884SoilMITQQHLASFKHADRDIYAREKVLNSAIISADISSGWEEYLEIFDAFYANHV
Ga0209583_1044098023300027910WatershedsMITQQHLASIHRADRDLYAREKVLNSAIIAADISSGWEEYLQIFDAFYADQVEVS
Ga0265354_100489733300028016RhizosphereMITQQHFASIHRADRDLYAREKVLNSAIIAADISSGWEAYLEIF
Ga0302149_114632613300028552BogMISQQYLASIKHADRDIFAREKVLNSAIISADISSGWEEYLEIFDVFYAKHVEGTDGTESGAVFGRER
Ga0222749_1009514433300029636SoilMTTQQYFASVNYAERDLYARERVLNSAIIAADISRGWEEYLEIFDAFYADHVEVTDGTESGEVF
Ga0311344_1098124013300030020BogMISQQYLASIKHADRDIFAREKVLNSAIISADISSGWEEYLEIFDVFYAKHVEGTDGTESGAVFGRERI
Ga0265765_100172313300030879SoilMITQQHLASIHRADRDLYAREKVLNSAIIAADISSGWEAYLEIFDAS
Ga0138303_109840913300030939SoilMITQQHLASFKHADRDIYAREKVLNSAILSADISSGWEEVLEMFDAFYADQNLRVIRYL
Ga0302325_1032476843300031234PalsaMITEQHLASFKRADRDLYAREKVLNSAIIAADISSGWEGYLEIFDAFYADDVEVGDGAE
Ga0307483_101334613300031590Hardwood Forest SoilMRGQQHLASGDRADCDLYVRDQVLNSAIIAADISRGWEEYLAILDAFYADHVEVTDGKEA
Ga0310686_10803469623300031708SoilMSAQHLSASLSNVDRDPYARERILNAAISAADITSGWEEYLEILDAFYADHVEVTALRANIAETLLVP
Ga0310686_11093983713300031708SoilMIAQQHLASIKRADRDLYAREKVLNSAIIAADISSGWEEYLEIFDAFYADDVEITD
Ga0310686_11097158733300031708SoilMIPQQHLASFKRTDRDLFAREKVLNSAIIAADISSGWEEYLEIFDAFYADDVEITDGTESSAVFG
Ga0310686_11901586513300031708SoilMITQQHSASINRADRDLYAREKILNSAIIAVDISTGWEAYLEIFDAFYADQKSQDM
Ga0307476_1062239323300031715Hardwood Forest SoilMITQQHLASINRADRDLYAREKVLNSAIIAADIRSGWEAYLEILDAFYADHVEVSDGTESGFERSS
Ga0307474_1002399813300031718Hardwood Forest SoilMITQHHLASINRADRELHASEKVLNSAIIAADISSGWEAYLEIFDTFYADQVEVSEGAE
Ga0307474_1014558213300031718Hardwood Forest SoilMITQQHLASINRADRDLYAREKVLNSAIIAADISSGWEAYLEILDAFYADHVEVSDGTERGSVFG
Ga0307474_1070282713300031718Hardwood Forest SoilMSAQQHLVSVNHADRDLYARERVLNSAIIAADISSGWEEYLEIFDAFYADDVEVSAGTE
Ga0307474_1103914623300031718Hardwood Forest SoilMITQQHLPSFERADRDLYAREKVLNSAIIAADISSGWEAYFEIFDAFYADDVEVTD
Ga0307468_10078841423300031740Hardwood Forest SoilMITQQHLASTNRANRDLYAREKVLNSAIIAADISSGWEAYLEIFDAFYADHVEVSDGT
Ga0307477_1079290723300031753Hardwood Forest SoilMITRQHLASTNRANRDLYAREKVLNSAIIAADISSGWEAYLEIFDAFYADQVEISDGTESGLVFGRE
Ga0307477_1089624423300031753Hardwood Forest SoilMITQQHSASIKHADLDLYAREKVLNSTIIAADISSGWEEYLEIFDAFYADHVEVSDGTEGGPVF
Ga0307475_1154848913300031754Hardwood Forest SoilMITQQYLPSFERADRDLYAREKVLNSAIIAADISSGWEEYFEIFDAFYADDVEVT
Ga0307478_1068207423300031823Hardwood Forest SoilMITQQHLASIKHADLDLYAREKVLNSAIIAADISSGWEEYLEIFDAFYADHVEVS
Ga0307479_1208748223300031962Hardwood Forest SoilMCTQQHFASVNFAERDLYARERVLNSAIIAADISSGWEEYLEIFDAFYADHVEVSDGTESGAVFGR
Ga0307471_10019759623300032180Hardwood Forest SoilMRSQQHLASGYRADCDINARDQVLNSAIIAADISRGWEEYLAILDAFYADHVEVTDGTEAVI

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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