NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2001224753

Scaffold 2001224753


Overview

Basic Information
Taxon OID2001200001 Open in IMG/M
Scaffold ID2001224753 Open in IMG/M
Source Dataset NameSoil microbial communities from Waseca County, Minnesota, USA - Sample 10150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)896
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Waseca County, Minnesota, Usa

Source Dataset Sampling Location
Location NameWaseca County, Minnesota, USA
CoordinatesLat. (o)44.152652Long. (o)-93.519745Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018806Metagenome / Metatranscriptome233Y

Sequences

Protein IDFamilyRBSSequence
2001247205F018806AGAAGMRRSSERGSSRLQFLIVMVVLVAGAYAGYLYVPVAYRAHTYKDLMQHYADVAVAQGYPPSWAGEQLLKNGAEYEVPTDAIITPTQRDNRVEVRVQFVRPIEFPGSPQSNLSC
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