NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2001237019

Scaffold 2001237019


Overview

Basic Information
Taxon OID2001200001 Open in IMG/M
Scaffold ID2001237019 Open in IMG/M
Source Dataset NameSoil microbial communities from Waseca County, Minnesota, USA - Sample 10150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)1934
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Waseca County, Minnesota, Usa

Source Dataset Sampling Location
Location NameWaseca County, Minnesota, USA
CoordinatesLat. (o)44.152652Long. (o)-93.519745Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000265Metagenome / Metatranscriptome1420Y
F041429Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
2001266360F000265GGAGMPETRGIQATDEVKAEWSLAYKHYLRAPGDRFDKKKDRTQRIDYVAQEMKLTRKQAKRRIRNYEAWQRNIKKGIVHP
2001266363F041429N/AMSETARYRRATSYENFEQQLKVAHAFASVDAVRSFEVLEPGISQLNELLQAASVLSGFEINMFRDGEMAIRDGNGLTNTVNRYGQELAVLAKNDFDRSETLAGRFQFSEPRIMTRLAIVQGLLGVKPVAGGPRAALGNFGENIVIRPD
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