NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2004302435

Scaffold 2004302435


Overview

Basic Information
Taxon OID2004247004 Open in IMG/M
Scaffold ID2004302435 Open in IMG/M
Source Dataset NameHypersaline mat microbial communities from Guerrero Negro, Mexico - 4-5 mm depth into microbial mat
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)801
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Salt Crystallizer Ponds → Microbial Mats → Hypersaline Mat → Hypersaline Mat Microbial Communities From Guerrero Negro, Baja California Sur, Mexico

Source Dataset Sampling Location
Location NameGuerrero Negro, Baja California Sur, Mexico
CoordinatesLat. (o)27.68908Long. (o)-113.917Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F086602Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
2004305801F086602N/AFTFDKHADLPADQQPAYRLADIEMAINVWEGHKVVDAVALRAVVLHDPQGEKPAERWPVVFLTDDRDIDTRALLNEYGDHWGQEFAHRIGKHDLCLDILPPGYVLKTERDAQGQLVREVKDDDTAFFLFAWLRCLVFNLMSRFAQALGGDYTKMWAGTLLRKFIRRPATLYLVGKELHVVFDPFPGQDELQPLLDKLNAKRTALSWLNNLVVQFRIAQDEPVHPLTEPEKRNRLFEDG
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