Scaffold lwFormate_BCIX7371_b1

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold lwFormate_BCIX7371_b1

Scaffold lwFormate_BCIX7371_b1

Overview

Basic Information
Taxon OID	2006207004 Open in IMG/M
Scaffold ID	lwFormate_BCIX7371_b1 Open in IMG/M
Source Dataset Name	Sediment methylotrophic communities from Lake Washington - Formate enrichment
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	790
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Sediment → Sediment Methylotrophic Communities From Lake Washington, Seattle, Washington, Usa

Source Dataset Sampling Location
Location Name	Lake Washington, Seattle, USA
Coordinates	Lat. (^o)	47.676484	Long. (^o)	-122.228394	Alt. (m)		Depth (m)	63
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038804	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
LWFOR_26545	F038804	AGGAGG	MTIFGNRDSGYGSSPTVDAAPALESLDRPATSTRSFGAPDTRRVILRVHGDENILVGNAEGRDNAVVVARNMVQHIEQAAAKGEWPQIEERFIRPGAIVSIDVQRPE

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