NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2007312189

Scaffold 2007312189


Overview

Basic Information
Taxon OID2007309000 Open in IMG/M
Scaffold ID2007312189 Open in IMG/M
Source Dataset NameHot spring microbial communities from Yellowstone Bath Hot Springs, Wyoming, USA - Filamentous sample
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2467
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.560318Long. (o)-110.8338344Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038745Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
2007318229F038745N/AMDKAVVVVCGELMQISLAFSAYYPLCSGGPPCAYAEAVERLIRRAASARGAEELLEALGGRVRLEELGLPDPALEVLAEELGPEPPWLDALAASFFRLYLGLGRRRRIDGRDLALALCLWAQKKRREDPRNPLWRAAELKPDRLYTEEEARKALNIEERLFRRLWRRALAFHRGEKAYGFQLILAALSLMAAPPRSV
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