NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2007510640

Scaffold 2007510640


Overview

Basic Information
Taxon OID2007427000 Open in IMG/M
Scaffold ID2007510640 Open in IMG/M
Source Dataset NameUranium contaminated groundwater from Oak Ridge Integrated Field Research Center, Tennessee
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)957
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Oak Ridge Integrated Field Research Center, Tennessee, That Are Pristine And Uranium Contaminated

Source Dataset Sampling Location
Location NameDOE Field Research Center Area 3 Well FW106, Oakridge, TN
CoordinatesLat. (o)36.11569Long. (o)-84.248657Alt. (m)Depth (m)21
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027645Metagenome194Y

Sequences

Protein IDFamilyRBSSequence
2007535028F027645GAGMGSDEPFLTWAGLPAKTRELLTGKLAGLWGAPTDASAFDSWPLDKKQGMLLLLERMREQGLWRLVKRVTNVYGEGGVGLEFEAWPMIESTL
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