Scaffold 2008213378

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold 2008213378

Scaffold 2008213378

Overview

Basic Information
Taxon OID	2008193001 Open in IMG/M
Scaffold ID	2008213378 Open in IMG/M
Source Dataset Name	Marine bacterioplankton communities from Palmer Station B, Arthur Harbor, Antarctica - Winter
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1217
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Bacterioplankton Communities From Palmer Station B, Arthur Harbor, Antarctica

Source Dataset Sampling Location
Location Name	Arthur Harbor, Palmer Station, Antarctic Peninsula
Coordinates	Lat. (^o)	-64.766667	Long. (^o)	-64.05	Alt. (m)		Depth (m)	10
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013024	Metagenome / Metatranscriptome	275	N

Sequences

Protein ID	Family	RBS	Sequence
2008217411	F013024	N/A	MEKPATKFIATKLFWLGVIGTYILAGVLLNRLETNAGYEELRFTSLIPTLFYFFILFLSYRSFKTQAVRTTILQFVTQMLLLLPLMAMYMAVILFTTKFSS

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