NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BISONR_BXAS39919_y2

Scaffold BISONR_BXAS39919_y2


Overview

Basic Information
Taxon OID2010170001 Open in IMG/M
Scaffold IDBISONR_BXAS39919_y2 Open in IMG/M
Source Dataset Name3_050719R
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)843
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Bison Spring, Yellowstone National Park, Usa, Analyzing Thermal Gradients

Source Dataset Sampling Location
Location NameBison Pool / Rosette Geyser, Yellowstone National Park
CoordinatesLat. (o)44.6Long. (o)-110.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024968Metagenome / Metatranscriptome203Y
F031015Metagenome / Metatranscriptome183Y

Sequences

Protein IDFamilyRBSSequence
BISONR_439390F024968GGGGGMQPKVCLVLFSFGTFNRAWTQILRNLGIDYTLCIATSGGTGANIQTPQGVFAAGSPGLRGYFRQFDAVILCDSTNNLAATSLINYSVFWMRWNDPEDPAFLFFNPHFSTAITESAYNSNFPSDFPIVRPSPSDIAGTLYAADGGSASSISLLGVGATSGRGACVLFLAENIRAHVMTICNTHTNNIPYYWKLDTAKHSVLASTTYTHRVARNGKAGEILAVPAPPISSEDTETYPADCVV
BISONR_439400F031015N/AWGRIEIPSTGDGYYDQYRIEVQRTAGSSNYNLLSKIVGVR

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