Scaffold BISONQ_C10017

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold BISONQ_C10017

Scaffold BISONQ_C10017

Overview

Basic Information
Taxon OID	2010170002 Open in IMG/M
Scaffold ID	BISONQ_C10017 Open in IMG/M
Source Dataset Name	4_050719Q
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1538
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Bison Spring, Yellowstone National Park, Usa, Analyzing Thermal Gradients

Source Dataset Sampling Location
Location Name	Bison Pool / Rosette Geyser, Yellowstone National Park
Coordinates	Lat. (^o)	44.6	Long. (^o)	-110.9	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F045123	Metagenome / Metatranscriptome	153	N

Sequences

Protein ID	Family	RBS	Sequence
BISONQ_237650	F045123	GGAG	MARRAKPSGKPTTRVRETLTRLGYAEHEDFEYEVEVRLYGNRRLYADVMLFQGDTPLVVVEVEGNARQQREGYEEARLKGAAWNLENPVPLLWVAAGNQDALYQLQPSQSSIQYAPLDGETPAELLAPARLLEAIGDYLRRTETEA

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