NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BEDJCVIAssemblies_1105430079341

Scaffold BEDJCVIAssemblies_1105430079341


Overview

Basic Information
Taxon OID2012990007 Open in IMG/M
Scaffold IDBEDJCVIAssemblies_1105430079341 Open in IMG/M
Source Dataset NameHot spring microbial communities from Beowulf East Transect D, Yellowstone National Park, USA - YSTONE2 (BED)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)816
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.731451Long. (o)-110.7113131Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F084460Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
BEDJCVIAssemblies_121140F084460N/AMSQINPDDLLQKIDEIVNKAIAKYLLKQASKYTPQEINVKFTKNWILVFLPNGYLKISRKFNEGSYKLKILQYKEKK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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