NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold FACENCE_FW6223E01D95FJ

Scaffold FACENCE_FW6223E01D95FJ


Overview

Basic Information
Taxon OID2032320002 Open in IMG/M
Scaffold IDFACENCE_FW6223E01D95FJ Open in IMG/M
Source Dataset NameSoil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)524
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Face And Otc Sites In Usa

Source Dataset Sampling Location
Location NameFACE Site 3 Nevada Test Site Creosote
CoordinatesLat. (o)36.766667Long. (o)-115.95Alt. (m)Depth (m).05
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018678Metagenome / Metatranscriptome233Y

Sequences

Protein IDFamilyRBSSequence
FACENCEE_6465980F018678GGAGGMRPEEDPLGGREDVLGRLIEEKAGEGRTVWASFNWVVPVELETALEQQERLSELVGSGQQLVVKTAALEEAIDEWSSATLRRAQSSHSGTIMASDNGLSLNRTTPM
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