NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold FACENCT_FZOFKYN02FHW07

Scaffold FACENCT_FZOFKYN02FHW07


Overview

Basic Information
Taxon OID2032320003 Open in IMG/M
Scaffold IDFACENCT_FZOFKYN02FHW07 Open in IMG/M
Source Dataset NameSoil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2-
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)517
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Face And Otc Sites In Usa

Source Dataset Sampling Location
Location NameNevada Desert Research Center
CoordinatesLat. (o)36.76667Long. (o)-115.95Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010524Metagenome / Metatranscriptome302Y

Sequences

Protein IDFamilyRBSSequence
FACENCTA_3526290F010524AGGVATTTNNARELAQKVREALWAEWQGAAGGSLQSAVVYRRLLDEGVEVPGYQMSAILNSFKVGGLITVSHRPQREDDVREHGDLVIMGVRSDLCHSS
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