NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold FACENC_F56XM5W01EC3VH

Scaffold FACENC_F56XM5W01EC3VH


Overview

Basic Information
Taxon OID2035918004 Open in IMG/M
Scaffold IDFACENC_F56XM5W01EC3VH Open in IMG/M
Source Dataset NameSoil microbial communities from sample at FACE Site 2 North Carolina CO2-
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)525
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Face And Otc Sites In Usa

Source Dataset Sampling Location
Location NameOrange County, North Carolina
CoordinatesLat. (o)36.0Long. (o)-80.934Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055712Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
FACENCA_1921110F055712GAGGMEASGVHGVQVGGREPKALLLTDGTRLALENEGPGGRADWMLLGDDRAEDRELSVADAIRIAGERHAEYVRIRTRSEVAWLRLVSEWFEEE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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