NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold mobDRAFT_NODE_4554_len_3105_cov_10_754589

Scaffold mobDRAFT_NODE_4554_len_3105_cov_10_754589


Overview

Basic Information
Taxon OID2044078009 Open in IMG/M
Scaffold IDmobDRAFT_NODE_4554_len_3105_cov_10_754589 Open in IMG/M
Source Dataset NameSample 10347
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3139
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Unclassified → Human Oral → Human Oral Microbial Communities From J. Craig Venter Institute, Usa

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049707Metagenome146N

Sequences

Protein IDFamilyRBSSequence
mobDRAFT_857850F049707AGGAGVSEYTSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWTVWYFRLVDGGVMTFSSREWEQKDDVNHLTTIWMKPSMYGIERKGN
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