Scaffold mhc6b_MHC6B

Basic Information
Taxon OID	2051223007 Open in IMG/M
Scaffold ID	mhc6b_MHC6B_contig35301 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from Orebro University Hospital, Sweden - Sample 10375
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Maryland School of Medicine
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

2051223007 Open in IMG/M

Scaffold ID

mhc6b_MHC6B_contig35301 Open in IMG/M

Source Dataset Name

Human fecal microbial communities from Orebro University Hospital, Sweden - Sample 10375

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Maryland School of Medicine

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25737
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (14.81%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

25737

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (14.81%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Orebro University Hospital, Sweden, Of Individuals With Crohns Disease

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Orebro University Hospital, Sweden, Of Individuals With Crohns Disease

Source Dataset Sampling Location
Location Name	Orebro University Hospital, Sweden
Coordinates	Lat. (^o)	59.274717	Long. (^o)	15.230656	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Orebro University Hospital, Sweden

Coordinates

Lat. (^o)

59.274717

Long. (^o)

15.230656

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F060985	Metagenome / Metatranscriptome	132	N
F080163	Metagenome	115	N
F094005	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
MHC6B_contig35301_metagene_gene_2	F044555	N/A	MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYIGNLPTVPDLEKPIEIQVSTIRQIPLEQNKEVQTKIKEIIYNNLYDTLVDELKDTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
MHC6B_contig35301_metagene_gene_5	F080163	N/A	MKTIKFLQESFQQEISFKYSYNRDTIESVDLRINRHNIRSFYEAMQNFENSLVDEFKEKKTNFCNAKQFLESISDFDKIIFVIITYMKTYFDFCKDSSKISLHVHLVQFDFTTSVLIQGFYNYNHRDLSFSTKLKREVLDSEIELLQEKLDLIREEICELIGVDTDLQKKGMKKIIFSI
MHC6B_contig35301_metagene_gene_6	F060985	GAG	MKKAKNDFTIEIRIFENYEKVKYEIIKVIDFLRHAETNLGMCRIFDNQNHEFWHSVIKPWFQPERFGITHLWFPSGFSFMGYGEYHTIRGNRWLKTPIDKIDKEDRIFGYWFPPYKKYIPHRIKVLKLALKDLERIKEEYGKD
MHC6B_contig35301_metagene_gene_7	F032312	N/A	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALHDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
MHC6B_contig35301_metagene_gene_8	F094005	N/A	MEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNSFVAYHQSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKLNE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold mhc6b_MHC6B_contig35301

Overview

Ecosystem & Geography

Associated Families

Sequences