NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GSLNARP_GFPJP1N02IO9G8

Scaffold GSLNARP_GFPJP1N02IO9G8


Overview

Basic Information
Taxon OID2051774008 Open in IMG/M
Scaffold IDGSLNARP_GFPJP1N02IO9G8 Open in IMG/M
Source Dataset NameSaline water microbial communities from Great Salt Lake, Utah, sample from North Arm Rozel Point
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)500
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Water Microbial Communities From Great Salt Lake, Utah

Source Dataset Sampling Location
Location NameGreat Salt Lake
CoordinatesLat. (o)41.454358Long. (o)-112.666397Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062489Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
GSLNARP_02232200F062489GAGVIRERVAEGPTRRYVYHRLSAGGYERQTQLWRQAKDGWHTTGTEVIEALAIDGGSGGLTIATE
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