Scaffold BDMC2_contig12431

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold BDMC2_contig12431

Scaffold BDMC2_contig12431

Overview

Basic Information
Taxon OID	2061766000 Open in IMG/M
Scaffold ID	BDMC2_contig12431 Open in IMG/M
Source Dataset Name	Benzene-degrading bioreactor microbial communities from Toronto, Ontario, Canada, that are methanogenic - September 2009 gDNA_4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	915
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Hydrocarbon → Benzene → Bioreactor → Benzene-Degrading Bioreactor → Benzene-Degrading Bioreactor Microbial Communities From Toronto, Ontario, Canada, That Are Methanogenic

Source Dataset Sampling Location
Location Name	Toronto, Ontario
Coordinates	Lat. (^o)	43.658712	Long. (^o)	-79.396003	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F064732	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
BDMC2_00257270	F064732	GGA	MPKVSEFKWKDMEAEAEAATAAARERCTMPLAQSAERHVRFPSSPMAPGQFIAATATRSI

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