Scaffold rumenHiSeq_NODE_2573058_len_6125_cov_1_880816

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold rumenHiSeq_NODE_2573058_len_6125_cov_1_880816

Scaffold rumenHiSeq_NODE_2573058_len_6125_cov_1_880816

Overview

Basic Information
Taxon OID	2061766007 Open in IMG/M
Scaffold ID	rumenHiSeq_NODE_2573058_len_6125_cov_1_880816 Open in IMG/M
Source Dataset Name	Bovine rumen microbial communities fromthe University of Illinois at Urbana-Champaign, USA, that are switchgrass associated - Sample 470
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6175
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Switchgrass-Associated Bovine Rumen Microbial Communities From Urbana, Illinois, Usa

Source Dataset Sampling Location
Location Name	University of Illinois at Urbana - Champaign, Illinois, USA
Coordinates	Lat. (^o)	40.096	Long. (^o)	-88.2315	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F096242	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
_HiSeq_18285480	F096242	AGGA	MLLKLIKIREMNSGAHCEVWEANLLMGDHFLARVFVLNEHMPIELIYRLTVSWRGICIQGRHSGWQWESEAAERIVTHYLEQIQASREEIRIEVCRPKPDLPGYPEADYHPDDYPIVMID

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