NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold rumenHiSeq_NODE_3655088_len_22020_cov_1_698093

Scaffold rumenHiSeq_NODE_3655088_len_22020_cov_1_698093


Overview

Basic Information
Taxon OID2061766007 Open in IMG/M
Scaffold IDrumenHiSeq_NODE_3655088_len_22020_cov_1_698093 Open in IMG/M
Source Dataset NameBovine rumen microbial communities fromthe University of Illinois at Urbana-Champaign, USA, that are switchgrass associated - Sample 470
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22070
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (80.39%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Switchgrass-Associated Bovine Rumen Microbial Communities From Urbana, Illinois, Usa

Source Dataset Sampling Location
Location NameUniversity of Illinois at Urbana - Champaign, Illinois, USA
CoordinatesLat. (o)40.096Long. (o)-88.2315Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012184Metagenome / Metatranscriptome282Y
F065312Metagenome / Metatranscriptome127Y
F086398Metagenome / Metatranscriptome110Y
F087968Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
_HiSeq_22529440F087968AGGAGGMIKITKTHARTLYNAGKEIMIIPNKMRTDSFMANWTTKPTDDPSADFDKLCNAIAYYNCSPETGMALAYYVKEM
_HiSeq_22529460F086398AGGAGGMEMTYHVAVQRADRVKHIIEEIGIGQIIKEKYTRFNIGQAGRWVCLTDTGITIIKDEPKQKVITMYVTTQRELVAVYGGTKKVPNFLRKKVDYNQSKFTQAGKTIWR
_HiSeq_22529480F065312AGGAGGMSKKKNPKPKTWVEVFQAERKEFPQGYCVMRIIPDKRNRKPKHKGRELEE
_HiSeq_22529500F012184AGGAGMTINELKNMISGIEGAVNARANKVNFVVIPCEDGIVKVNTVVASEKDGNHRKAFNMEAAVAEYKAWEAEGALRAAERANKPAKVKGPNPEAQARRDELDAAITAMPAFTDYTATDISKVVKVSYDATPMLVGSAAKRLVEKGVLTVSSRENDKKPYYTKA
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