NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold rumenHiSeq_NODE_3832373_len_32624_cov_1_392411

Scaffold rumenHiSeq_NODE_3832373_len_32624_cov_1_392411


Overview

Basic Information
Taxon OID2061766007 Open in IMG/M
Scaffold IDrumenHiSeq_NODE_3832373_len_32624_cov_1_392411 Open in IMG/M
Source Dataset NameBovine rumen microbial communities fromthe University of Illinois at Urbana-Champaign, USA, that are switchgrass associated - Sample 470
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32674
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (84.38%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Switchgrass-Associated Bovine Rumen Microbial Communities From Urbana, Illinois, Usa

Source Dataset Sampling Location
Location NameUniversity of Illinois at Urbana - Champaign, Illinois, USA
CoordinatesLat. (o)40.096Long. (o)-88.2315Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012184Metagenome / Metatranscriptome282Y
F065312Metagenome / Metatranscriptome127Y
F086398Metagenome / Metatranscriptome110Y
F087968Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
_HiSeq_21281890F012184N/AVKKEETMTNAEILSTILNIPGAVMCRVNKTNFIAVPTEEGYAKIAVGTALAKDTKTHKAFNFEAAKEAYKAYEAEVALREAEKANKPVKEKGPNPEAEARRQALDAQIAGLPSFTDYTATDILSALNGQVAENVTVMAVGSSAMRLVDQGLLSVEVRKDEKNPKGKKYYTKG
_HiSeq_21282130F065312AGGAGGMGKKKKQKPKTWVEVFQSERKTFPQGYCVSRVIEDKRNKPPKHKKGWDEE
_HiSeq_21282150F086398AGGGGGMAEMTYHVSVDRAERVKNIVEKIGMGQIIKEKYVGYGIGGPAGRYICITDTGVTIIKDETKEKIITIYVTTQKELVQVYGGTKKIPPFLRKKVDYNQSKFTENGKTIWKG
_HiSeq_21282170F087968AGAAGGMVKVTKALAKKLYDEGEAVMIVPNRVRPTSQLAHWTTKPANDPNADFEKLCNAIFYYNCSPETGMKLAYYVKEV
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