Basic Information | |
---|---|
Taxon OID | 2061766007 Open in IMG/M |
Scaffold ID | rumenHiSeq_NODE_4172268_len_223017_cov_1_575602 Open in IMG/M |
Source Dataset Name | Bovine rumen microbial communities fromthe University of Illinois at Urbana-Champaign, USA, that are switchgrass associated - Sample 470 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 223067 |
Total Scaffold Genes | 384 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 250 (65.10%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
---|---|
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Imitervirales | (Source: IMG-VR) |
Source Dataset Ecosystem |
---|
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Switchgrass-Associated Bovine Rumen Microbial Communities From Urbana, Illinois, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | University of Illinois at Urbana - Champaign, Illinois, USA | |||||||
Coordinates | Lat. (o) | 40.096 | Long. (o) | -88.2315 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F096172 | Metagenome / Metatranscriptome | 105 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
_HiSeq_14557540 | F096172 | AGGAG | MKTSVKAHLNNLHLSDIYSLMLFIIYKIQDIPEYASLSELCYLLDGANLTRLFTYFEGRTLKVPSAEEFATMANALLLYQYINIDGMTLVDAQGKLEDVTPKQLDKATDLYLKIIPIMRQYNIDKEQIKHGDYR |
⦗Top⦘ |