NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold rumenHiSeq_NODE_4378828_len_3213_cov_1_295985

Scaffold rumenHiSeq_NODE_4378828_len_3213_cov_1_295985


Overview

Basic Information
Taxon OID2061766007 Open in IMG/M
Scaffold IDrumenHiSeq_NODE_4378828_len_3213_cov_1_295985 Open in IMG/M
Source Dataset NameBovine rumen microbial communities fromthe University of Illinois at Urbana-Champaign, USA, that are switchgrass associated - Sample 470
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3263
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Switchgrass-Associated Bovine Rumen Microbial Communities From Urbana, Illinois, Usa

Source Dataset Sampling Location
Location NameUniversity of Illinois at Urbana - Champaign, Illinois, USA
CoordinatesLat. (o)40.096Long. (o)-88.2315Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F098416Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
_HiSeq_04966640F098416N/ALLVILISSTLXXXYLSGALAEALKDVKLNDEKIQAKFNKVVGYLNFINSFIGAKLKLEYDAKVLAGEGAKEAEKKAGGAEDLKTKISGAQAMAMGMGSSMVAPMISSFGMTDTVKALDLDSFSISIGVPQYENGYAISIKIPGLSQVLGGMLDAPAQPPK

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