NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GPWNP_F5MPXY301EDSWO

Scaffold GPWNP_F5MPXY301EDSWO


Overview

Basic Information
Taxon OID2067725001 Open in IMG/M
Scaffold IDGPWNP_F5MPXY301EDSWO Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Wisconsin Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)511
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameWisconsin, USA
CoordinatesLat. (o)43.312222Long. (o)-89.370833Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063827Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
GPWNP_01342450F063827N/ASVASLPDAGRRDLATALQALSQLVAVQDALGERFDERTVEVFGQGAVLLSYRVAQQQRTIQVIELLWLG
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