NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GPICC_F5MS3JC01D0TMB

Scaffold GPICC_F5MS3JC01D0TMB


Overview

Basic Information
Taxon OID2067725002 Open in IMG/M
Scaffold IDGPICC_F5MS3JC01D0TMB Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Continuous Corn soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)526
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m).1016
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005766Metagenome / Metatranscriptome391Y

Sequences

Protein IDFamilyRBSSequence
GPICC_02186410F005766N/AGASAGLRYRFGLGRQAPWILLEDRFGYDRFQDTAQSGYDNVLNFEAGIALSDRIALEGGYAFESFVSPNDFYDRQVHRVNASVVFDVTSSLQVTGGYIYREGDVISYAVPPRPDIARFSIEREDEDVFGQPLRTAYKLLGRTHALSFSVAYQLMKYASVQLGYEYAVT

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