NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold EF_singleton_cluster_11367

Scaffold EF_singleton_cluster_11367


Overview

Basic Information
Taxon OID2070309007 Open in IMG/M
Scaffold IDEF_singleton_cluster_11367 Open in IMG/M
Source Dataset NameEF-deduplicated data
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Illinois, Urbana-Champaign
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)524
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Nutrient Removal → Dissolved Organics (Anaerobic) → Activated Sludge → Wastewater → Wastewater Viral Communities From Wastewater Treatment Facility In Singapore

Source Dataset Sampling Location
Location NameSingapore: Singapore
CoordinatesLat. (o)1.332Long. (o)103.756Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002371Metagenome / Metatranscriptome566Y

Sequences

Protein IDFamilyRBSSequence
EF_02445650F002371GAGVLGVKKETRGGTRQGSGAKPKYNEQTKTVAFRCPLSKVDELKLIVKSKLSEWSVK
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