NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GPKNP_GG3DY5402HP2KB

Scaffold GPKNP_GG3DY5402HP2KB


Overview

Basic Information
Taxon OID2070309009 Open in IMG/M
Scaffold IDGPKNP_GG3DY5402HP2KB Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Kansas, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)500
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameKansas, USA
CoordinatesLat. (o)39.214012Long. (o)-96.585283Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F090915Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
GPKNP_04688990F090915GGAGGMKQLSERWTPLAGVLAVVCSLVGVLHVLNQPQTKDSNAKITAYFADHSHRVQGAVSFFVYLAGIVFLLVFLSALRERLLAAEGQPGRLSALAFGAGVAALPLWGISMLLANAMSFTVSESAAFTVDPNTYRLLGV
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