Scaffold P1_DRAFT_NODE_151707_len_23746_cov_20_013475

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold P1_DRAFT_NODE_151707_len_23746_cov_20_013475

Scaffold P1_DRAFT_NODE_151707_len_23746_cov_20_013475

Overview

Basic Information
Taxon OID	2088090004 Open in IMG/M
Scaffold ID	P1_DRAFT_NODE_151707_len_23746_cov_20_013475 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	23796
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (41.38%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location Name	Bonanza creek, Alaska, USA
Coordinates	Lat. (^o)	64.7	Long. (^o)	-148.3	Alt. (m)		Depth (m)	.3 to .7
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040820	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
P1_DRAFT_00014140	F040820	AGG	VGLAAIACGGSAPATATGEYPESGLVLLSLTDGTQRGSGSIGTDPVAVIVSGDGKTAYVADSAPGDVYAVRLPGLQVAWKQHVGGAPFGLLLHSERLFVSLFDGASVVELEPSSGRKLATHPVPQGAAVMTTDGAGHVVVAGTRGQLNVIDGGQLAAGNGFGVALAGGQLWSADYERAELVPAGDDHRVGLPLPLFPFWLAQGGGDTLLIAAEGGTEDSDPGGVFSFDPVTGAFKTLATPKDPDQVLQSGSTIFVPAHGDRDVLAIKDGSSSAWAPGAAAVALAPDPALGLLVVAVNAHE

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