Scaffold P3_DRAFT_NODE_97345_len_8299_cov_17_023256

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold P3_DRAFT_NODE_97345_len_8299_cov_17_023256

Scaffold P3_DRAFT_NODE_97345_len_8299_cov_17_023256

Overview

Basic Information
Taxon OID	2088090008 Open in IMG/M
Scaffold ID	P3_DRAFT_NODE_97345_len_8299_cov_17_023256 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8349
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location Name	Bonanza creek, Alaska, USA
Coordinates	Lat. (^o)	64.7	Long. (^o)	-148.3	Alt. (m)		Depth (m)	.3 to .7
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002338	Metagenome / Metatranscriptome	569	Y

Sequences

Protein ID	Family	RBS	Sequence
P3_DRAFT_00293880	F002338	N/A	MQELKAETPPESPAADPASRLMARLTEEGFTTELTDDDWRNDGEIIFRRAEKISFAAGETIFIFTRVRDLNERILHQTSESVVNAYKARSAAGKALSVLQSTTVYHCLVAEGDQPHNDLLTGYVTRSGGATFIPVVIVPEINQVIYPNLEEKVASVRPRVEYLQYLLGERREPVNMHRPTVQAIWVSLAVVAVLVLAIVVSLLH

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.