NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ASHM260b_contig00212

Scaffold ASHM260b_contig00212


Overview

Basic Information
Taxon OID2088090012 Open in IMG/M
Scaffold IDASHM260b_contig00212 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from Arctic Ocean, off the coast from Alaska - sample from high methane PC12-236-260cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)825
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Coastal Water And Sediment → Coastal Water And Sediment Microbial Communities From Arctic Ocean, Off The Coast From Alaska

Source Dataset Sampling Location
Location NameArctic Ocean
CoordinatesLat. (o)74.0678Long. (o)-145.54687Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000918Metagenome / Metatranscriptome834Y

Sequences

Protein IDFamilyRBSSequence
ASHM260b_00899810F000918N/AMYKTNQQCWDEVTQSIIESNIRTKICIDMFGQENLIGLTDEQKELFWQSV

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