Scaffold LWAnNN_GDP3C2T02GQUJB

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold LWAnNN_GDP3C2T02GQUJB

Scaffold LWAnNN_GDP3C2T02GQUJB

Overview

Basic Information
Taxon OID	2088090013 Open in IMG/M
Scaffold ID	LWAnNN_GDP3C2T02GQUJB Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities from Lake Washington, Seattle, for methane and nitrogen Cycles - SIP 13Cmethane anaerobic no nitrate
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	510
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Sediment → Freshwater Sediment Microbial Communities From Lake Washington, Seattle, Usa, For Methane And Nitrogen Cycles

Source Dataset Sampling Location
Location Name	Lake Washington, Seattle, Washington, USA
Coordinates	Lat. (^o)	47.07	Long. (^o)	-122.27889	Alt. (m)		Depth (m)	62
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025233	Metagenome / Metatranscriptome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
LWAnNN_02160720	F025233	N/A	MNLLIAKLMFTLKLYTGAIIPSDDVDGRTIYSIPSAKIEYAYQAEILRYLETGVFTYDDTLDDSVDLSKVTKAQIKF

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