NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GPIPI_16515926

Scaffold GPIPI_16515926


Overview

Basic Information
Taxon OID2088090014 Open in IMG/M
Scaffold IDGPIPI_16515926 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1589
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001643Metagenome / Metatranscriptome659Y
F052106Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
GPIPI_00152030F052106N/AMLTNINGGLAPAFKTHELRKRGANDTVETERTTWLPDINGKWQLSEIRQNIATQGTKDRSIEERVSRPDAEGKLGQISRVGSQETESTSGEKRSVVETYSIDVPGSTRDGSLHLVERKTSTESSSSTGGRATEQKVEQINPGDPGSGLRVSVLVDGKILPEPSGKSTVIIRARDSNGNFGIVSVDTTKADRIPTVQIQQTPAEKP
GPIPI_00152040F001643GGAMLGELMNIPTDTLIDMLYIILAGEVAISASDAREIEQIQRELQRRGDEQCWSLRTVN
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